""" Test serialization-specific functionality that doesn't need to be applied across every interface (use test_interface/test_interfaces for that """ import h5py import pytest from pathlib import Path from typing import Callable import numpy as np import json pytestmark = pytest.mark.serialization @pytest.fixture(scope="module") def hdf5_at_path() -> Callable[[Path], None]: _path = "" def _hdf5_at_path(path: Path) -> None: nonlocal _path _path = path h5f = h5py.File(path, "w") _ = h5f.create_dataset("/data", data=np.array([[1, 2], [3, 4]])) _ = h5f.create_dataset("subpath/to/dataset", data=np.array([[1, 2], [4, 5]])) h5f.close() yield _hdf5_at_path Path(_path).unlink(missing_ok=True) def test_relative_path(hdf5_at_path, tmp_output_dir, model_blank): """ By default, we should make all paths relative to the cwd """ out_path = tmp_output_dir / "relative.h5" hdf5_at_path(out_path) model = model_blank(array=(out_path, "/data")) rt = model.model_dump_json(round_trip=True) file = json.loads(rt)["array"]["file"] # should not be absolute assert not Path(file).is_absolute() # should be relative to cwd out_file = (Path.cwd() / file).resolve() assert out_file == out_path.resolve() def test_relative_to_path(hdf5_at_path, tmp_output_dir, model_blank): """ When explicitly passed a path to be ``relative_to`` , relative to that instead of cwd """ out_path = tmp_output_dir / "relative.h5" relative_to_path = Path(__file__) / "fake_dir" / "sub_fake_dir" expected_path = "../../../__tmp__/relative.h5" hdf5_at_path(out_path) model = model_blank(array=(out_path, "/data")) rt = model.model_dump_json( round_trip=True, context={"relative_to": str(relative_to_path)} ) data = json.loads(rt)["array"] file = data["file"] # should not be absolute assert not Path(file).is_absolute() # should be expected path and reach the file assert file == expected_path assert (relative_to_path / file).resolve() == out_path.resolve() # we shouldn't have touched `/data` even though it is pathlike assert data["path"] == "/data" def test_relative_to_path(hdf5_at_path, tmp_output_dir, model_blank): """ When told, we make paths absolute """ out_path = tmp_output_dir / "relative.h5" expected_dataset = "subpath/to/dataset" hdf5_at_path(out_path) model = model_blank(array=(out_path, expected_dataset)) rt = model.model_dump_json(round_trip=True, context={"absolute_paths": True}) data = json.loads(rt)["array"] file = data["file"] # should be absolute and equal to out_path assert Path(file).is_absolute() assert Path(file) == out_path.resolve() # shouldn't have absolutized subpath even if it's pathlike assert data["path"] == expected_dataset