nwb-linkml/nwb_linkml/tests/test_adapters/test_adapter_namespaces.py

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import pdb
import pytest
from ..fixtures import nwb_core_fixture
from nwb_schema_language import Dataset, Group
from nwb_linkml.adapters import SchemaAdapter
@pytest.mark.parametrize(
['class_name','schema_file','namespace_name'],
[
('DynamicTable', 'table.yaml', 'hdmf-common'),
('Container', 'base.yaml', 'hdmf-common'),
('TimeSeries', 'nwb.base.yaml', 'core'),
('ImageSeries', 'nwb.image.yaml', 'core')
]
)
def test_find_type_source(nwb_core_fixture, class_name, schema_file, namespace_name):
defining_sch = nwb_core_fixture.find_type_source(class_name)
assert defining_sch.path.name == schema_file
assert namespace_name == defining_sch.namespace
def test_populate_imports(nwb_core_fixture):
nwb_core_fixture.populate_imports()
schema: SchemaAdapter
assert len(nwb_core_fixture.schemas) > 0
for schema in nwb_core_fixture.schemas:
need_imports = [nwb_core_fixture.find_type_source(cls.neurodata_type_def).namespace for cls in schema.created_classes if cls.neurodata_type_inc is not None]
need_imports = [i for i in need_imports if i != schema.namespace]
for i in need_imports:
assert i in schema.imports
def test_build(nwb_core_fixture):
pass
def test_skip_imports(nwb_core_fixture):
"""
We can build just the namespace in question without also building the other namespaces that it imports
"""
res = nwb_core_fixture.build(skip_imports=True)
# we shouldn't have any of the hdmf-common schema in with us
namespaces = [sch.annotations['namespace'].value for sch in res.schemas]
assert all([ns == 'core' for ns in namespaces])