nwb-linkml/nwb_linkml/conftest.py

import os
from doctest import ELLIPSIS, NORMALIZE_WHITESPACE

import pytest
from sybil import Sybil
from sybil.parsers.rest import DocTestParser, PythonCodeBlockParser

pytest_collect_file = Sybil(
    parsers=[
        DocTestParser(optionflags=ELLIPSIS + NORMALIZE_WHITESPACE),
        PythonCodeBlockParser(),
    ],
    patterns=["*.py"],
).pytest()


@pytest.fixture(autouse=True, scope="session")
def set_config_vars(tmp_output_dir):
    os.environ["NWB_LINKML_CACHE_DIR"] = str(tmp_output_dir)