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nwb-linkml/nwb_linkml/schema/core.nwb.retinotopy.include.yaml

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Cleaner code generation, npytyping type hints for arrays - split off generated subclasses into "include" files, not sure if that's good, but in any case we have them separable now. - more work on cleanly un-nesting scalar and 1D-vector data into attributes and lists, respectively - brought the pydantic generator in-repo to do a bunch of overrides
2023-08-29 05:16:58 +00:00
name: core.nwb.retinotopy.include
id: core.nwb.retinotopy.include
imports:
- core.nwb.base
- nwb.language
- core.nwb.retinotopy.include
- core.nwb.retinotopy
default_prefix: core.nwb.retinotopy.include/
classes:
ImagingRetinotopy__axis_1_phase_map:
name: ImagingRetinotopy__axis_1_phase_map
description: Phase response to stimulus on the first measured axis.
attributes:
dimension:
name: dimension
description: 'Number of rows and columns in the image. NOTE: row, column representation
is equivalent to height, width.'
range: int32
field_of_view:
name: field_of_view
description: Size of viewing area, in meters.
range: float32
unit:
name: unit
description: Unit that axis data is stored in (e.g., degrees).
range: text
array:
name: array
range: ImagingRetinotopy__axis_1_phase_map__Array
ImagingRetinotopy__axis_1_phase_map__Array:
name: ImagingRetinotopy__axis_1_phase_map__Array
is_a: Arraylike
attributes:
num_rows:
name: num_rows
range: float32
required: false
num_cols:
name: num_cols
range: float32
required: false
ImagingRetinotopy__axis_1_power_map:
name: ImagingRetinotopy__axis_1_power_map
description: Power response on the first measured axis. Response is scaled so
0.0 is no power in the response and 1.0 is maximum relative power.
attributes:
dimension:
name: dimension
description: 'Number of rows and columns in the image. NOTE: row, column representation
is equivalent to height, width.'
range: int32
field_of_view:
name: field_of_view
description: Size of viewing area, in meters.
range: float32
unit:
name: unit
description: Unit that axis data is stored in (e.g., degrees).
range: text
array:
name: array
range: ImagingRetinotopy__axis_1_power_map__Array
ImagingRetinotopy__axis_1_power_map__Array:
name: ImagingRetinotopy__axis_1_power_map__Array
is_a: Arraylike
attributes:
num_rows:
name: num_rows
range: float32
required: false
num_cols:
name: num_cols
range: float32
required: false
ImagingRetinotopy__axis_2_phase_map:
name: ImagingRetinotopy__axis_2_phase_map
description: Phase response to stimulus on the second measured axis.
attributes:
dimension:
name: dimension
description: 'Number of rows and columns in the image. NOTE: row, column representation
is equivalent to height, width.'
range: int32
field_of_view:
name: field_of_view
description: Size of viewing area, in meters.
range: float32
unit:
name: unit
description: Unit that axis data is stored in (e.g., degrees).
range: text
array:
name: array
range: ImagingRetinotopy__axis_2_phase_map__Array
ImagingRetinotopy__axis_2_phase_map__Array:
name: ImagingRetinotopy__axis_2_phase_map__Array
is_a: Arraylike
attributes:
num_rows:
name: num_rows
range: float32
required: false
num_cols:
name: num_cols
range: float32
required: false
ImagingRetinotopy__axis_2_power_map:
name: ImagingRetinotopy__axis_2_power_map
description: Power response on the second measured axis. Response is scaled so
0.0 is no power in the response and 1.0 is maximum relative power.
attributes:
dimension:
name: dimension
description: 'Number of rows and columns in the image. NOTE: row, column representation
is equivalent to height, width.'
range: int32
field_of_view:
name: field_of_view
description: Size of viewing area, in meters.
range: float32
unit:
name: unit
description: Unit that axis data is stored in (e.g., degrees).
range: text
array:
name: array
range: ImagingRetinotopy__axis_2_power_map__Array
ImagingRetinotopy__axis_2_power_map__Array:
name: ImagingRetinotopy__axis_2_power_map__Array
is_a: Arraylike
attributes:
num_rows:
name: num_rows
range: float32
required: false
num_cols:
name: num_cols
range: float32
required: false
ImagingRetinotopy__axis_descriptions:
name: ImagingRetinotopy__axis_descriptions
description: Two-element array describing the contents of the two response axis
fields. Description should be something like ['altitude', 'azimuth'] or '['radius',
'theta'].
attributes:
axis_descriptions:
name: axis_descriptions
description: Two-element array describing the contents of the two response
axis fields. Description should be something like ['altitude', 'azimuth']
or '['radius', 'theta'].
multivalued: true
range: text
required: true
ImagingRetinotopy__focal_depth_image:
name: ImagingRetinotopy__focal_depth_image
description: 'Gray-scale image taken with same settings/parameters (e.g., focal
depth, wavelength) as data collection. Array format: [rows][columns].'
attributes:
bits_per_pixel:
name: bits_per_pixel
description: Number of bits used to represent each value. This is necessary
to determine maximum (white) pixel value.
range: int32
dimension:
name: dimension
description: 'Number of rows and columns in the image. NOTE: row, column representation
is equivalent to height, width.'
range: int32
field_of_view:
name: field_of_view
description: Size of viewing area, in meters.
range: float32
focal_depth:
name: focal_depth
description: Focal depth offset, in meters.
range: float32
format:
name: format
description: Format of image. Right now only 'raw' is supported.
range: text
array:
name: array
range: ImagingRetinotopy__focal_depth_image__Array
ImagingRetinotopy__focal_depth_image__Array:
name: ImagingRetinotopy__focal_depth_image__Array
is_a: Arraylike
attributes:
num_rows:
name: num_rows
range: uint16
required: false
num_cols:
name: num_cols
range: uint16
required: false
ImagingRetinotopy__sign_map:
name: ImagingRetinotopy__sign_map
description: Sine of the angle between the direction of the gradient in axis_1
and axis_2.
attributes:
dimension:
name: dimension
description: 'Number of rows and columns in the image. NOTE: row, column representation
is equivalent to height, width.'
range: int32
field_of_view:
name: field_of_view
description: Size of viewing area, in meters.
range: float32
array:
name: array
range: ImagingRetinotopy__sign_map__Array
ImagingRetinotopy__sign_map__Array:
name: ImagingRetinotopy__sign_map__Array
is_a: Arraylike
attributes:
num_rows:
name: num_rows
range: float32
required: false
num_cols:
name: num_cols
range: float32
required: false
ImagingRetinotopy__vasculature_image:
name: ImagingRetinotopy__vasculature_image
description: 'Gray-scale anatomical image of cortical surface. Array structure:
[rows][columns]'
attributes:
bits_per_pixel:
name: bits_per_pixel
description: Number of bits used to represent each value. This is necessary
to determine maximum (white) pixel value
range: int32
dimension:
name: dimension
description: 'Number of rows and columns in the image. NOTE: row, column representation
is equivalent to height, width.'
range: int32
field_of_view:
name: field_of_view
description: Size of viewing area, in meters.
range: float32
format:
name: format
description: Format of image. Right now only 'raw' is supported.
range: text
array:
name: array
range: ImagingRetinotopy__vasculature_image__Array
ImagingRetinotopy__vasculature_image__Array:
name: ImagingRetinotopy__vasculature_image__Array
is_a: Arraylike
attributes:
num_rows:
name: num_rows
range: uint16
required: false
num_cols:
name: num_cols
range: uint16
required: false
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