nwb-linkml/nwb_linkml/tests/data/test_nwb_condensed_sketch.yaml

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2024-08-31 08:47:42 +00:00
# Sketch of a condensed expression syntax for creation with nwb-linkml
# just a sketch! keeping here for continued work but currentl unused.
---
id: my_dataset
prefixes:
nwbfile:
- path: "test_nwb.nwb"
- hash: "blake2b:blahblahblahblah"
imports:
core:
as: nwb
version: "2.7.0"
from:
- pypi:
package: nwb-models
hdmf-common:
as: hdmf
version: "1.8.0"
from:
- pypi:
package: nwb-models
---
extracellular_ephys: &ecephys
electrodes:
group:
- @shank{{i}}
- @shank{{i}}
- @shank{{i}}
# could have expression here like { range(3) } => i
# - ... { range(3) } => i
# or blank ... implies use expression from outer scope
- ...
shank{{i}}:
device: @general.devices.array
...: { range(3) } => i
# expands to
extracellular_ephys:
electrodes:
group:
- @shank0
- @shank0
- @shank0
- @shank1
- # etc.
shank0:
device: @general.devices.array
shank1:
device: @general.devices.array
# etc.
data: !{{ nwb.NWBFile }} <== :nwbfile
file_create_date: [ 2024-01-01 ]
identifier: "1111-1111-1111-1111"
session_description: All that you touch, you change.
session_start_time: 2024-01-01T01:01:01
general:
devices:
- Heka ITC-1600:
- Microscope:
- array:
description: old reliable
manufacturer: diy
extracellular_ephys: *ecephys
experiment_description: All that you change, changes you.
experimenter: [ "Lauren Oya Olamina" ]
institution: Earthseed Research Institute
keywords:
- behavior
- belief
related_publications: doi:10.1016/j.neuron.2016.12.011