2023-09-27 02:50:49 +00:00
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import pdb
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2023-09-23 08:33:28 +00:00
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import pytest
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import h5py
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2023-09-27 02:50:49 +00:00
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import time
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2023-09-23 08:33:28 +00:00
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2023-09-27 02:50:49 +00:00
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from nwb_linkml.maps.hdmf import model_from_dynamictable, dynamictable_to_model
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2023-10-10 06:27:33 +00:00
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from ..fixtures import data_dir
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2023-09-23 08:33:28 +00:00
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NWBFILE = '/Users/jonny/Dropbox/lab/p2p_ld/data/nwb/sub-738651046_ses-760693773.nwb'
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2023-10-10 06:27:33 +00:00
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@pytest.mark.parametrize(
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'dataset',
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[
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'aibs.nwb'
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]
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)
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def test_make_dynamictable(data_dir, dataset):
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nwbfile = data_dir / dataset
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h5f = h5py.File(nwbfile, 'r')
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2023-09-27 02:50:49 +00:00
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group = h5f['units']
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2023-09-23 08:33:28 +00:00
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2023-09-27 02:50:49 +00:00
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start_time = time.time()
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2023-09-23 08:33:28 +00:00
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model = model_from_dynamictable(group)
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2023-09-27 02:50:49 +00:00
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data = dynamictable_to_model(group, model)
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2023-10-10 06:27:33 +00:00
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2024-04-17 19:55:52 +00:00
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_ = data.model_dump_json()
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2023-09-27 02:50:49 +00:00
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end_time = time.time()
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total_time = end_time - start_time
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2023-09-23 08:33:28 +00:00
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