nwb-linkml/nwb_linkml/schema/core.nwb.retinotopy.yaml

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YAML
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name: core.nwb.retinotopy
id: core.nwb.retinotopy
imports:
- core.nwb.base
- nwb.language
- core.nwb.retinotopy.include
- core.nwb.retinotopy
default_prefix: core.nwb.retinotopy/
classes:
ImagingRetinotopy:
name: ImagingRetinotopy
description: 'Intrinsic signal optical imaging or widefield imaging for measuring
retinotopy. Stores orthogonal maps (e.g., altitude/azimuth; radius/theta) of
responses to specific stimuli and a combined polarity map from which to identify
visual areas. This group does not store the raw responses imaged during retinotopic
mapping or the stimuli presented, but rather the resulting phase and power maps
after applying a Fourier transform on the averaged responses. Note: for data
consistency, all images and arrays are stored in the format [row][column] and
[row, col], which equates to [y][x]. Field of view and dimension arrays may
appear backward (i.e., y before x).'
is_a: NWBDataInterface
attributes:
name:
name: name
range: string
required: true
axis_1_phase_map:
name: axis_1_phase_map
description: Phase response to stimulus on the first measured axis.
multivalued: false
range: ImagingRetinotopy__axis_1_phase_map
required: true
axis_1_power_map:
name: axis_1_power_map
description: Power response on the first measured axis. Response is scaled
so 0.0 is no power in the response and 1.0 is maximum relative power.
multivalued: false
range: ImagingRetinotopy__axis_1_power_map
required: false
axis_2_phase_map:
name: axis_2_phase_map
description: Phase response to stimulus on the second measured axis.
multivalued: false
range: ImagingRetinotopy__axis_2_phase_map
required: true
axis_2_power_map:
name: axis_2_power_map
description: Power response on the second measured axis. Response is scaled
so 0.0 is no power in the response and 1.0 is maximum relative power.
multivalued: false
range: ImagingRetinotopy__axis_2_power_map
required: false
axis_descriptions:
name: axis_descriptions
description: Two-element array describing the contents of the two response
axis fields. Description should be something like ['altitude', 'azimuth']
or '['radius', 'theta'].
multivalued: true
range: text
required: true
focal_depth_image:
name: focal_depth_image
description: 'Gray-scale image taken with same settings/parameters (e.g.,
focal depth, wavelength) as data collection. Array format: [rows][columns].'
multivalued: false
range: ImagingRetinotopy__focal_depth_image
required: false
sign_map:
name: sign_map
description: Sine of the angle between the direction of the gradient in axis_1
and axis_2.
multivalued: false
range: ImagingRetinotopy__sign_map
required: false
vasculature_image:
name: vasculature_image
description: 'Gray-scale anatomical image of cortical surface. Array structure:
[rows][columns]'
multivalued: false
range: ImagingRetinotopy__vasculature_image
required: true
tree_root: true