nwb-linkml/nwb_linkml/schema/core.nwb.image.include.yaml

name: core.nwb.image.include
id: core.nwb.image.include
imports:
- core.nwb.base
- core.nwb.device
- nwb.language
- core.nwb.image.include
- core.nwb.image
default_prefix: core.nwb.image.include/
classes:
  GrayscaleImage__Array:
    name: GrayscaleImage__Array
    is_a: Arraylike
    attributes:
      x:
        name: x
        range: numeric
        required: false
      y:
        name: y
        range: numeric
        required: false
  RGBImage__Array:
    name: RGBImage__Array
    is_a: Arraylike
    attributes:
      x:
        name: x
        range: numeric
        required: false
      y:
        name: y
        range: numeric
        required: false
      r, g, b:
        name: r, g, b
        range: numeric
        required: false
        minimum_cardinality: 3
        maximum_cardinality: 3
  RGBAImage__Array:
    name: RGBAImage__Array
    is_a: Arraylike
    attributes:
      x:
        name: x
        range: numeric
        required: false
      y:
        name: y
        range: numeric
        required: false
      r, g, b, a:
        name: r, g, b, a
        range: numeric
        required: false
        minimum_cardinality: 4
        maximum_cardinality: 4
  ImageSeries__data:
    name: ImageSeries__data
    description: Binary data representing images across frames. If data are stored
      in an external file, this should be an empty 3D array.
    attributes:
      array:
        name: array
        range: ImageSeries__data__Array
  ImageSeries__data__Array:
    name: ImageSeries__data__Array
    is_a: Arraylike
    attributes:
      frame:
        name: frame
        range: numeric
        required: true
      x:
        name: x
        range: numeric
        required: true
      y:
        name: y
        range: numeric
        required: true
      z:
        name: z
        range: numeric
        required: false
  ImageSeries__dimension:
    name: ImageSeries__dimension
    description: Number of pixels on x, y, (and z) axes.
    attributes:
      dimension:
        name: dimension
        description: Number of pixels on x, y, (and z) axes.
        multivalued: true
        range: int32
        required: false
  ImageSeries__external_file:
    name: ImageSeries__external_file
    description: Paths to one or more external file(s). The field is only present
      if format='external'. This is only relevant if the image series is stored in
      the file system as one or more image file(s). This field should NOT be used
      if the image is stored in another NWB file and that file is linked to this file.
    attributes:
      starting_frame:
        name: starting_frame
        description: Each external image may contain one or more consecutive frames
          of the full ImageSeries. This attribute serves as an index to indicate which
          frames each file contains, to facilitate random access. The 'starting_frame'
          attribute, hence, contains a list of frame numbers within the full ImageSeries
          of the first frame of each file listed in the parent 'external_file' dataset.
          Zero-based indexing is used (hence, the first element will always be zero).
          For example, if the 'external_file' dataset has three paths to files and
          the first file has 5 frames, the second file has 10 frames, and the third
          file has 20 frames, then this attribute will have values [0, 5, 15]. If
          there is a single external file that holds all of the frames of the ImageSeries
          (and so there is a single element in the 'external_file' dataset), then
          this attribute should have value [0].
        range: int32
      external_file:
        name: external_file
        description: Paths to one or more external file(s). The field is only present
          if format='external'. This is only relevant if the image series is stored
          in the file system as one or more image file(s). This field should NOT be
          used if the image is stored in another NWB file and that file is linked
          to this file.
        multivalued: true
        range: text
        required: false
  OpticalSeries__field_of_view:
    name: OpticalSeries__field_of_view
    description: Width, height and depth of image, or imaged area, in meters.
    attributes:
      array:
        name: array
        range: OpticalSeries__field_of_view__Array
  OpticalSeries__field_of_view__Array:
    name: OpticalSeries__field_of_view__Array
    is_a: Arraylike
    attributes:
      width, height:
        name: width, height
        range: float32
        required: false
        minimum_cardinality: 2
        maximum_cardinality: 2
      width, height, depth:
        name: width, height, depth
        range: float32
        required: false
        minimum_cardinality: 3
        maximum_cardinality: 3
  OpticalSeries__data:
    name: OpticalSeries__data
    description: Images presented to subject, either grayscale or RGB
    attributes:
      array:
        name: array
        range: OpticalSeries__data__Array
  OpticalSeries__data__Array:
    name: OpticalSeries__data__Array
    is_a: Arraylike
    attributes:
      frame:
        name: frame
        range: numeric
        required: true
      x:
        name: x
        range: numeric
        required: true
      y:
        name: y
        range: numeric
        required: true
      r, g, b:
        name: r, g, b
        range: numeric
        required: false
        minimum_cardinality: 3
        maximum_cardinality: 3
  IndexSeries__data:
    name: IndexSeries__data
    description: Index of the image (using zero-indexing) in the linked Images object.
    attributes:
      conversion:
        name: conversion
        description: This field is unused by IndexSeries.
        range: float32
      resolution:
        name: resolution
        description: This field is unused by IndexSeries.
        range: float32
      offset:
        name: offset
        description: This field is unused by IndexSeries.
        range: float32
      unit:
        name: unit
        description: This field is unused by IndexSeries and has the value N/A.
        range: text
      data:
        name: data
        description: Index of the image (using zero-indexing) in the linked Images
          object.
        multivalued: true
        range: uint32
        required: true