mirror of
https://github.com/p2p-ld/nwb-linkml.git
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235 lines
6.4 KiB
YAML
235 lines
6.4 KiB
YAML
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groups:
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- neurodata_type_def: ImagingRetinotopy
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neurodata_type_inc: NWBDataInterface
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default_name: ImagingRetinotopy
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doc: 'Intrinsic signal optical imaging or widefield imaging for measuring retinotopy.
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Stores orthogonal maps (e.g., altitude/azimuth; radius/theta) of responses to
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specific stimuli and a combined polarity map from which to identify visual areas.
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This group does not store the raw responses imaged during retinotopic mapping or the
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stimuli presented, but rather the resulting phase and power maps after applying a Fourier
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transform on the averaged responses.
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Note: for data consistency, all images and arrays are stored in the format [row][column]
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and [row, col], which equates to [y][x]. Field of view and dimension arrays may
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appear backward (i.e., y before x).'
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datasets:
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- name: axis_1_phase_map
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dtype: float32
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dims:
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- num_rows
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- num_cols
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shape:
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- null
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- null
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doc: Phase response to stimulus on the first measured axis.
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attributes:
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- name: dimension
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dtype: int32
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dims:
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- num_rows, num_cols
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shape:
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- 2
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doc: 'Number of rows and columns in the image. NOTE: row, column representation
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is equivalent to height, width.'
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- name: field_of_view
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dtype: float32
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dims:
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- height, width
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shape:
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- 2
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doc: Size of viewing area, in meters.
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- name: unit
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dtype: text
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doc: Unit that axis data is stored in (e.g., degrees).
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- name: axis_1_power_map
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dtype: float32
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dims:
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- num_rows
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- num_cols
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shape:
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- null
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- null
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doc: Power response on the first measured axis. Response is scaled so 0.0 is no
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power in the response and 1.0 is maximum relative power.
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quantity: '?'
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attributes:
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- name: dimension
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dtype: int32
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dims:
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- num_rows, num_cols
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shape:
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- 2
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doc: 'Number of rows and columns in the image. NOTE: row, column representation
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is equivalent to height, width.'
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- name: field_of_view
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dtype: float32
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dims:
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- height, width
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shape:
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- 2
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doc: Size of viewing area, in meters.
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- name: unit
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dtype: text
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doc: Unit that axis data is stored in (e.g., degrees).
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- name: axis_2_phase_map
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dtype: float32
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dims:
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- num_rows
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- num_cols
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shape:
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- null
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- null
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doc: Phase response to stimulus on the second measured axis.
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attributes:
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- name: dimension
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dtype: int32
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dims:
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- num_rows, num_cols
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shape:
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- 2
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doc: 'Number of rows and columns in the image. NOTE: row, column representation
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is equivalent to height, width.'
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- name: field_of_view
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dtype: float32
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dims:
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- height, width
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shape:
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- 2
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doc: Size of viewing area, in meters.
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- name: unit
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dtype: text
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doc: Unit that axis data is stored in (e.g., degrees).
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- name: axis_2_power_map
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dtype: float32
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dims:
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- num_rows
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- num_cols
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shape:
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- null
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- null
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doc: Power response on the second measured axis. Response is scaled so 0.0 is
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no power in the response and 1.0 is maximum relative power.
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quantity: '?'
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attributes:
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- name: dimension
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dtype: int32
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dims:
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- num_rows, num_cols
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shape:
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- 2
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doc: 'Number of rows and columns in the image. NOTE: row, column representation
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is equivalent to height, width.'
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- name: field_of_view
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dtype: float32
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dims:
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- height, width
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shape:
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- 2
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doc: Size of viewing area, in meters.
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- name: unit
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dtype: text
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doc: Unit that axis data is stored in (e.g., degrees).
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- name: axis_descriptions
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dtype: text
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dims:
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- axis_1, axis_2
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shape:
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- 2
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doc: Two-element array describing the contents of the two response axis fields.
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Description should be something like ['altitude', 'azimuth'] or '['radius',
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'theta'].
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- name: focal_depth_image
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dtype: uint16
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dims:
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- num_rows
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- num_cols
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shape:
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- null
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- null
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doc: 'Gray-scale image taken with same settings/parameters (e.g., focal depth,
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wavelength) as data collection. Array format: [rows][columns].'
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quantity: '?'
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attributes:
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- name: bits_per_pixel
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dtype: int32
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doc: Number of bits used to represent each value. This is necessary to determine
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maximum (white) pixel value.
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- name: dimension
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dtype: int32
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dims:
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- num_rows, num_cols
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shape:
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- 2
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doc: 'Number of rows and columns in the image. NOTE: row, column representation
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is equivalent to height, width.'
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- name: field_of_view
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dtype: float32
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dims:
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- height, width
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shape:
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- 2
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doc: Size of viewing area, in meters.
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- name: focal_depth
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dtype: float32
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doc: Focal depth offset, in meters.
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- name: format
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dtype: text
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doc: Format of image. Right now only 'raw' is supported.
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- name: sign_map
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dtype: float32
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dims:
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- num_rows
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- num_cols
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shape:
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- null
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- null
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doc: Sine of the angle between the direction of the gradient in axis_1 and axis_2.
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quantity: '?'
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attributes:
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- name: dimension
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dtype: int32
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dims:
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- num_rows, num_cols
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shape:
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- 2
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doc: 'Number of rows and columns in the image. NOTE: row, column representation
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is equivalent to height, width.'
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- name: field_of_view
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dtype: float32
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dims:
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- height, width
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shape:
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- 2
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doc: Size of viewing area, in meters.
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- name: vasculature_image
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dtype: uint16
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dims:
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- num_rows
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- num_cols
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shape:
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- null
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- null
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doc: 'Gray-scale anatomical image of cortical surface. Array structure: [rows][columns]'
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attributes:
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- name: bits_per_pixel
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dtype: int32
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doc: Number of bits used to represent each value. This is necessary to determine
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maximum (white) pixel value
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- name: dimension
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dtype: int32
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dims:
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- num_rows, num_cols
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shape:
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- 2
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doc: 'Number of rows and columns in the image. NOTE: row, column representation
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is equivalent to height, width.'
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- name: field_of_view
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dtype: float32
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dims:
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- height, width
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shape:
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- 2
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doc: Size of viewing area, in meters.
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- name: format
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dtype: text
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doc: Format of image. Right now only 'raw' is supported.
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