nwb-linkml/nwb_linkml/tests/test_io/test_io_hdf5.py

import pdb

import pytest
from pathlib import Path

from ..fixtures import tmp_output_dir, set_config_vars

from nwb_linkml.io.hdf5 import HDF5IO
@pytest.mark.skip()
def test_hdf_read():
    NWBFILE = Path('/Users/jonny/Dropbox/lab/p2p_ld/data/nwb/sub-738651046_ses-760693773.nwb')
    if not NWBFILE.exists():
        return
    io = HDF5IO(path=NWBFILE)
    model = io.read('acquisition')

    pdb.set_trace()
successfully building many versions of nwb schema. working on hdf5 importing, come back to it when fresh, just sorta poking at it because it's so close. 2023-09-14 09:45:01 +00:00			`import pdb`

i'm just sorta making a mess here. coming back tomorrow 2023-09-06 07:50:49 +00:00			`import pytest`
			`from pathlib import Path`

successfully building many versions of nwb schema. working on hdf5 importing, come back to it when fresh, just sorta poking at it because it's so close. 2023-09-14 09:45:01 +00:00			`from ..fixtures import tmp_output_dir, set_config_vars`

i'm just sorta making a mess here. coming back tomorrow 2023-09-06 07:50:49 +00:00			`from nwb_linkml.io.hdf5 import HDF5IO`
fixing tests by using temp directory and changing random prior commit hash from nwb core schema 2023-09-12 02:55:45 +00:00			`@pytest.mark.skip()`
i'm just sorta making a mess here. coming back tomorrow 2023-09-06 07:50:49 +00:00			`def test_hdf_read():`
			`NWBFILE = Path('/Users/jonny/Dropbox/lab/p2p_ld/data/nwb/sub-738651046_ses-760693773.nwb')`
perf enhancements to pydantic generation 2023-09-07 05:48:47 +00:00			`if not NWBFILE.exists():`
			`return`
i'm just sorta making a mess here. coming back tomorrow 2023-09-06 07:50:49 +00:00			`io = HDF5IO(path=NWBFILE)`
successfully building many versions of nwb schema. working on hdf5 importing, come back to it when fresh, just sorta poking at it because it's so close. 2023-09-14 09:45:01 +00:00			`model = io.read('acquisition')`

			`pdb.set_trace()`