how come ide always misses the schema lol

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_0/core.nwb.base.yaml

@@ -292,6 +292,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_0/core.nwb.ecephys.yaml

@@ -139,6 +139,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -200,6 +201,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -309,9 +311,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -324,6 +355,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -366,6 +398,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_0/core.nwb.epoch.yaml

@@ -49,8 +49,9 @@ classes:
       timeseries:
         name: timeseries
         description: An index into a TimeSeries object.
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: TimeIntervals__timeseries
+        required: false
       timeseries_index:
         name: timeseries_index
         description: Index for timeseries.
@@ -70,6 +71,39 @@ classes:
         range: string
         required: true
         equals_string: tags_index
+  TimeIntervals__timeseries:
+    name: TimeIntervals__timeseries
+    description: An index into a TimeSeries object.
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(timeseries)
+        identifier: true
+        range: string
+        required: true
+        equals_string: timeseries
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: false
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch.
+        multivalued: false
+        range: int32
+        required: false
+      timeseries:
+        name: timeseries
+        description: the TimeSeries that this index applies to.
+        multivalued: false
+        range: TimeSeries
+        required: false
   TimeIntervals__timeseries_index:
     name: TimeIntervals__timeseries_index
     description: Index for timeseries.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_0/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_0/core.nwb.misc.yaml

@@ -246,6 +246,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_0/core.nwb.retinotopy.yaml

@@ -106,6 +106,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_1/core.nwb.base.yaml

@@ -292,6 +292,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_1/core.nwb.ecephys.yaml

@@ -139,6 +139,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -200,6 +201,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -309,9 +311,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -324,6 +355,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -366,6 +398,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_1/core.nwb.epoch.yaml

@@ -49,8 +49,9 @@ classes:
       timeseries:
         name: timeseries
         description: An index into a TimeSeries object.
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: TimeIntervals__timeseries
+        required: false
       timeseries_index:
         name: timeseries_index
         description: Index for timeseries.
@@ -70,6 +71,39 @@ classes:
         range: string
         required: true
         equals_string: tags_index
+  TimeIntervals__timeseries:
+    name: TimeIntervals__timeseries
+    description: An index into a TimeSeries object.
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(timeseries)
+        identifier: true
+        range: string
+        required: true
+        equals_string: timeseries
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: false
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch.
+        multivalued: false
+        range: int32
+        required: false
+      timeseries:
+        name: timeseries
+        description: the TimeSeries that this index applies to.
+        multivalued: false
+        range: TimeSeries
+        required: false
   TimeIntervals__timeseries_index:
     name: TimeIntervals__timeseries_index
     description: Index for timeseries.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_1/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_1/core.nwb.misc.yaml

@@ -246,6 +246,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_1/core.nwb.retinotopy.yaml

@@ -106,6 +106,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_2/core.nwb.base.yaml

@@ -292,6 +292,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_2/core.nwb.ecephys.yaml

@@ -139,6 +139,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -200,6 +201,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -309,9 +311,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -324,6 +355,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -366,6 +398,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_2/core.nwb.epoch.yaml

@@ -49,8 +49,9 @@ classes:
       timeseries:
         name: timeseries
         description: An index into a TimeSeries object.
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: TimeIntervals__timeseries
+        required: false
       timeseries_index:
         name: timeseries_index
         description: Index for timeseries.
@@ -70,6 +71,39 @@ classes:
         range: string
         required: true
         equals_string: tags_index
+  TimeIntervals__timeseries:
+    name: TimeIntervals__timeseries
+    description: An index into a TimeSeries object.
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(timeseries)
+        identifier: true
+        range: string
+        required: true
+        equals_string: timeseries
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: false
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch.
+        multivalued: false
+        range: int32
+        required: false
+      timeseries:
+        name: timeseries
+        description: the TimeSeries that this index applies to.
+        multivalued: false
+        range: TimeSeries
+        required: false
   TimeIntervals__timeseries_index:
     name: TimeIntervals__timeseries_index
     description: Index for timeseries.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_2/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_2/core.nwb.misc.yaml

@@ -246,6 +246,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_2/core.nwb.retinotopy.yaml

@@ -28,6 +28,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.base.yaml

@@ -292,6 +292,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.ecephys.yaml

@@ -139,6 +139,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -200,6 +201,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -309,9 +311,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -324,6 +355,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -366,6 +398,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.epoch.yaml

@@ -49,8 +49,9 @@ classes:
       timeseries:
         name: timeseries
         description: An index into a TimeSeries object.
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: TimeIntervals__timeseries
+        required: false
       timeseries_index:
         name: timeseries_index
         description: Index for timeseries.
@@ -70,6 +71,39 @@ classes:
         range: string
         required: true
         equals_string: tags_index
+  TimeIntervals__timeseries:
+    name: TimeIntervals__timeseries
+    description: An index into a TimeSeries object.
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(timeseries)
+        identifier: true
+        range: string
+        required: true
+        equals_string: timeseries
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: false
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch.
+        multivalued: false
+        range: int32
+        required: false
+      timeseries:
+        name: timeseries
+        description: the TimeSeries that this index applies to.
+        multivalued: false
+        range: TimeSeries
+        required: false
   TimeIntervals__timeseries_index:
     name: TimeIntervals__timeseries_index
     description: Index for timeseries.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.misc.yaml

@@ -246,6 +246,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.ophys.yaml

@@ -187,8 +187,9 @@ classes:
         description: 'Pixel masks for each ROI: a list of indices and weights for
           the ROI. Pixel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__pixel_mask
+        required: false
       voxel_mask_index:
         name: voxel_mask_index
         description: Index into voxel_mask.
@@ -200,8 +201,9 @@ classes:
         description: 'Voxel masks for each ROI: a list of indices and weights for
           the ROI. Voxel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__voxel_mask
+        required: false
       reference_images:
         name: reference_images
         description: Image stacks that the segmentation masks apply to.
@@ -223,6 +225,38 @@ classes:
         range: string
         required: true
         equals_string: pixel_mask_index
+  PlaneSegmentation__pixel_mask:
+    name: PlaneSegmentation__pixel_mask
+    description: 'Pixel masks for each ROI: a list of indices and weights for the
+      ROI. Pixel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(pixel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: pixel_mask
+      x:
+        name: x
+        description: Pixel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Pixel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the pixel.
+        multivalued: false
+        range: float32
+        required: false
   PlaneSegmentation__voxel_mask_index:
     name: PlaneSegmentation__voxel_mask_index
     description: Index into voxel_mask.
@@ -235,6 +269,44 @@ classes:
         range: string
         required: true
         equals_string: voxel_mask_index
+  PlaneSegmentation__voxel_mask:
+    name: PlaneSegmentation__voxel_mask
+    description: 'Voxel masks for each ROI: a list of indices and weights for the
+      ROI. Voxel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(voxel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: voxel_mask
+      x:
+        name: x
+        description: Voxel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Voxel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      z:
+        name: z
+        description: Voxel z-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the voxel.
+        multivalued: false
+        range: float32
+        required: false
   ImagingPlane:
     name: ImagingPlane
     description: An imaging plane and its metadata.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.retinotopy.yaml

@@ -28,6 +28,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.base.yaml

@@ -292,6 +292,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.ecephys.yaml

@@ -139,6 +139,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -200,6 +201,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -309,9 +311,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -324,6 +355,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -366,6 +398,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.epoch.yaml

@@ -49,8 +49,9 @@ classes:
       timeseries:
         name: timeseries
         description: An index into a TimeSeries object.
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: TimeIntervals__timeseries
+        required: false
       timeseries_index:
         name: timeseries_index
         description: Index for timeseries.
@@ -70,6 +71,39 @@ classes:
         range: string
         required: true
         equals_string: tags_index
+  TimeIntervals__timeseries:
+    name: TimeIntervals__timeseries
+    description: An index into a TimeSeries object.
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(timeseries)
+        identifier: true
+        range: string
+        required: true
+        equals_string: timeseries
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: false
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch.
+        multivalued: false
+        range: int32
+        required: false
+      timeseries:
+        name: timeseries
+        description: the TimeSeries that this index applies to.
+        multivalued: false
+        range: TimeSeries
+        required: false
   TimeIntervals__timeseries_index:
     name: TimeIntervals__timeseries_index
     description: Index for timeseries.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.misc.yaml

@@ -246,6 +246,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.ophys.yaml

@@ -187,8 +187,9 @@ classes:
         description: 'Pixel masks for each ROI: a list of indices and weights for
           the ROI. Pixel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__pixel_mask
+        required: false
       voxel_mask_index:
         name: voxel_mask_index
         description: Index into voxel_mask.
@@ -200,8 +201,9 @@ classes:
         description: 'Voxel masks for each ROI: a list of indices and weights for
           the ROI. Voxel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__voxel_mask
+        required: false
       reference_images:
         name: reference_images
         description: Image stacks that the segmentation masks apply to.
@@ -223,6 +225,38 @@ classes:
         range: string
         required: true
         equals_string: pixel_mask_index
+  PlaneSegmentation__pixel_mask:
+    name: PlaneSegmentation__pixel_mask
+    description: 'Pixel masks for each ROI: a list of indices and weights for the
+      ROI. Pixel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(pixel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: pixel_mask
+      x:
+        name: x
+        description: Pixel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Pixel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the pixel.
+        multivalued: false
+        range: float32
+        required: false
   PlaneSegmentation__voxel_mask_index:
     name: PlaneSegmentation__voxel_mask_index
     description: Index into voxel_mask.
@@ -235,6 +269,44 @@ classes:
         range: string
         required: true
         equals_string: voxel_mask_index
+  PlaneSegmentation__voxel_mask:
+    name: PlaneSegmentation__voxel_mask
+    description: 'Voxel masks for each ROI: a list of indices and weights for the
+      ROI. Voxel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(voxel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: voxel_mask
+      x:
+        name: x
+        description: Voxel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Voxel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      z:
+        name: z
+        description: Voxel z-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the voxel.
+        multivalued: false
+        range: float32
+        required: false
   ImagingPlane:
     name: ImagingPlane
     description: An imaging plane and its metadata.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.retinotopy.yaml

@@ -28,6 +28,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.base.yaml

@@ -305,6 +305,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.ecephys.yaml

@@ -149,6 +149,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -210,6 +211,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -319,9 +321,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -334,6 +365,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -376,6 +408,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.epoch.yaml

@@ -49,8 +49,9 @@ classes:
       timeseries:
         name: timeseries
         description: An index into a TimeSeries object.
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: TimeIntervals__timeseries
+        required: false
       timeseries_index:
         name: timeseries_index
         description: Index for timeseries.
@@ -70,6 +71,39 @@ classes:
         range: string
         required: true
         equals_string: tags_index
+  TimeIntervals__timeseries:
+    name: TimeIntervals__timeseries
+    description: An index into a TimeSeries object.
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(timeseries)
+        identifier: true
+        range: string
+        required: true
+        equals_string: timeseries
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: false
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch.
+        multivalued: false
+        range: int32
+        required: false
+      timeseries:
+        name: timeseries
+        description: the TimeSeries that this index applies to.
+        multivalued: false
+        range: TimeSeries
+        required: false
   TimeIntervals__timeseries_index:
     name: TimeIntervals__timeseries_index
     description: Index for timeseries.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.misc.yaml

@@ -266,6 +266,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.ophys.yaml

@@ -187,8 +187,9 @@ classes:
         description: 'Pixel masks for each ROI: a list of indices and weights for
           the ROI. Pixel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__pixel_mask
+        required: false
       voxel_mask_index:
         name: voxel_mask_index
         description: Index into voxel_mask.
@@ -200,8 +201,9 @@ classes:
         description: 'Voxel masks for each ROI: a list of indices and weights for
           the ROI. Voxel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__voxel_mask
+        required: false
       reference_images:
         name: reference_images
         description: Image stacks that the segmentation masks apply to.
@@ -223,6 +225,38 @@ classes:
         range: string
         required: true
         equals_string: pixel_mask_index
+  PlaneSegmentation__pixel_mask:
+    name: PlaneSegmentation__pixel_mask
+    description: 'Pixel masks for each ROI: a list of indices and weights for the
+      ROI. Pixel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(pixel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: pixel_mask
+      x:
+        name: x
+        description: Pixel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Pixel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the pixel.
+        multivalued: false
+        range: float32
+        required: false
   PlaneSegmentation__voxel_mask_index:
     name: PlaneSegmentation__voxel_mask_index
     description: Index into voxel_mask.
@@ -235,6 +269,44 @@ classes:
         range: string
         required: true
         equals_string: voxel_mask_index
+  PlaneSegmentation__voxel_mask:
+    name: PlaneSegmentation__voxel_mask
+    description: 'Voxel masks for each ROI: a list of indices and weights for the
+      ROI. Voxel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(voxel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: voxel_mask
+      x:
+        name: x
+        description: Voxel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Voxel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      z:
+        name: z
+        description: Voxel z-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the voxel.
+        multivalued: false
+        range: float32
+        required: false
   ImagingPlane:
     name: ImagingPlane
     description: An imaging plane and its metadata.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.retinotopy.yaml

@@ -28,6 +28,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.base.yaml

@@ -34,9 +34,31 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(timeseries)
         identifier: true
         range: string
         required: true
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: true
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch
+        multivalued: false
+        range: int32
+        required: true
+      timeseries:
+        name: timeseries
+        description: The TimeSeries that this index applies to
+        multivalued: false
+        range: TimeSeries
+        required: true
     tree_root: true
   Image:
     name: Image
@@ -318,6 +340,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.ecephys.yaml

@@ -149,6 +149,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -210,6 +211,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -319,9 +321,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -334,6 +365,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -376,6 +408,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.epoch.yaml

@@ -49,8 +49,9 @@ classes:
       timeseries:
         name: timeseries
         description: An index into a TimeSeries object.
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: TimeIntervals__timeseries
+        required: false
       timeseries_index:
         name: timeseries_index
         description: Index for timeseries.
@@ -70,6 +71,39 @@ classes:
         range: string
         required: true
         equals_string: tags_index
+  TimeIntervals__timeseries:
+    name: TimeIntervals__timeseries
+    description: An index into a TimeSeries object.
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(timeseries)
+        identifier: true
+        range: string
+        required: true
+        equals_string: timeseries
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: false
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch.
+        multivalued: false
+        range: int32
+        required: false
+      timeseries:
+        name: timeseries
+        description: the TimeSeries that this index applies to.
+        multivalued: false
+        range: TimeSeries
+        required: false
   TimeIntervals__timeseries_index:
     name: TimeIntervals__timeseries_index
     description: Index for timeseries.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.misc.yaml

@@ -266,6 +266,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.ophys.yaml

@@ -187,8 +187,9 @@ classes:
         description: 'Pixel masks for each ROI: a list of indices and weights for
           the ROI. Pixel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__pixel_mask
+        required: false
       voxel_mask_index:
         name: voxel_mask_index
         description: Index into voxel_mask.
@@ -200,8 +201,9 @@ classes:
         description: 'Voxel masks for each ROI: a list of indices and weights for
           the ROI. Voxel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__voxel_mask
+        required: false
       reference_images:
         name: reference_images
         description: Image stacks that the segmentation masks apply to.
@@ -223,6 +225,38 @@ classes:
         range: string
         required: true
         equals_string: pixel_mask_index
+  PlaneSegmentation__pixel_mask:
+    name: PlaneSegmentation__pixel_mask
+    description: 'Pixel masks for each ROI: a list of indices and weights for the
+      ROI. Pixel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(pixel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: pixel_mask
+      x:
+        name: x
+        description: Pixel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Pixel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the pixel.
+        multivalued: false
+        range: float32
+        required: false
   PlaneSegmentation__voxel_mask_index:
     name: PlaneSegmentation__voxel_mask_index
     description: Index into voxel_mask.
@@ -235,6 +269,44 @@ classes:
         range: string
         required: true
         equals_string: voxel_mask_index
+  PlaneSegmentation__voxel_mask:
+    name: PlaneSegmentation__voxel_mask
+    description: 'Voxel masks for each ROI: a list of indices and weights for the
+      ROI. Voxel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(voxel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: voxel_mask
+      x:
+        name: x
+        description: Voxel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Voxel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      z:
+        name: z
+        description: Voxel z-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the voxel.
+        multivalued: false
+        range: float32
+        required: false
   ImagingPlane:
     name: ImagingPlane
     description: An imaging plane and its metadata.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.retinotopy.yaml

@@ -28,6 +28,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_5_0/core.nwb.base.yaml

@@ -34,9 +34,31 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(timeseries)
         identifier: true
         range: string
         required: true
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: true
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch
+        multivalued: false
+        range: int32
+        required: true
+      timeseries:
+        name: timeseries
+        description: The TimeSeries that this index applies to
+        multivalued: false
+        range: TimeSeries
+        required: true
     tree_root: true
   Image:
     name: Image
@@ -345,6 +367,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_5_0/core.nwb.ecephys.yaml

@@ -149,6 +149,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -210,6 +211,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -319,9 +321,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -334,6 +365,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -376,6 +408,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_5_0/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_5_0/core.nwb.misc.yaml

@@ -266,6 +266,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_5_0/core.nwb.ophys.yaml

@@ -187,8 +187,9 @@ classes:
         description: 'Pixel masks for each ROI: a list of indices and weights for
           the ROI. Pixel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__pixel_mask
+        required: false
       voxel_mask_index:
         name: voxel_mask_index
         description: Index into voxel_mask.
@@ -200,8 +201,9 @@ classes:
         description: 'Voxel masks for each ROI: a list of indices and weights for
           the ROI. Voxel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__voxel_mask
+        required: false
       reference_images:
         name: reference_images
         description: Image stacks that the segmentation masks apply to.
@@ -223,6 +225,38 @@ classes:
         range: string
         required: true
         equals_string: pixel_mask_index
+  PlaneSegmentation__pixel_mask:
+    name: PlaneSegmentation__pixel_mask
+    description: 'Pixel masks for each ROI: a list of indices and weights for the
+      ROI. Pixel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(pixel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: pixel_mask
+      x:
+        name: x
+        description: Pixel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Pixel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the pixel.
+        multivalued: false
+        range: float32
+        required: false
   PlaneSegmentation__voxel_mask_index:
     name: PlaneSegmentation__voxel_mask_index
     description: Index into voxel_mask.
@@ -235,6 +269,44 @@ classes:
         range: string
         required: true
         equals_string: voxel_mask_index
+  PlaneSegmentation__voxel_mask:
+    name: PlaneSegmentation__voxel_mask
+    description: 'Voxel masks for each ROI: a list of indices and weights for the
+      ROI. Voxel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(voxel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: voxel_mask
+      x:
+        name: x
+        description: Voxel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Voxel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      z:
+        name: z
+        description: Voxel z-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the voxel.
+        multivalued: false
+        range: float32
+        required: false
   ImagingPlane:
     name: ImagingPlane
     description: An imaging plane and its metadata.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_5_0/core.nwb.retinotopy.yaml

@@ -28,6 +28,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_6_0_alpha/core.nwb.base.yaml

@@ -34,9 +34,31 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(timeseries)
         identifier: true
         range: string
         required: true
+      idx_start:
+        name: idx_start
+        description: Start index into the TimeSeries 'data' and 'timestamp' datasets
+          of the referenced TimeSeries. The first dimension of those arrays is always
+          time.
+        multivalued: false
+        range: int32
+        required: true
+      count:
+        name: count
+        description: Number of data samples available in this time series, during
+          this epoch
+        multivalued: false
+        range: int32
+        required: true
+      timeseries:
+        name: timeseries
+        description: The TimeSeries that this index applies to
+        multivalued: false
+        range: TimeSeries
+        required: true
     tree_root: true
   Image:
     name: Image
@@ -345,6 +367,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Images)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_6_0_alpha/core.nwb.ecephys.yaml

@@ -149,6 +149,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(FeatureExtraction)
         identifier: true
         range: string
         required: true
@@ -210,6 +211,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(EventDetection)
         identifier: true
         range: string
         required: true
@@ -319,9 +321,38 @@ classes:
         name: position
         description: stereotaxic or common framework coordinates
         multivalued: false
-        range: AnyType
+        range: ElectrodeGroup__position
         required: false
     tree_root: true
+  ElectrodeGroup__position:
+    name: ElectrodeGroup__position
+    description: stereotaxic or common framework coordinates
+    attributes:
+      name:
+        name: name
+        ifabsent: string(position)
+        identifier: true
+        range: string
+        required: true
+        equals_string: position
+      x:
+        name: x
+        description: x coordinate
+        multivalued: false
+        range: float32
+        required: false
+      y:
+        name: y
+        description: y coordinate
+        multivalued: false
+        range: float32
+        required: false
+      z:
+        name: z
+        description: z coordinate
+        multivalued: false
+        range: float32
+        required: false
   ClusterWaveforms:
     name: ClusterWaveforms
     description: DEPRECATED The mean waveform shape, including standard deviation,
@@ -334,6 +365,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ClusterWaveforms)
         identifier: true
         range: string
         required: true
@@ -376,6 +408,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Clustering)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_6_0_alpha/core.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_6_0_alpha/core.nwb.misc.yaml

@@ -266,6 +266,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(Units)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_6_0_alpha/core.nwb.ophys.yaml

@@ -224,8 +224,9 @@ classes:
         description: 'Pixel masks for each ROI: a list of indices and weights for
           the ROI. Pixel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__pixel_mask
+        required: false
       voxel_mask_index:
         name: voxel_mask_index
         description: Index into voxel_mask.
@@ -237,8 +238,9 @@ classes:
         description: 'Voxel masks for each ROI: a list of indices and weights for
           the ROI. Voxel masks are concatenated and parsing of this dataset is maintained
           by the PlaneSegmentation'
-        multivalued: true
+        multivalued: false
-        range: AnyType
+        range: PlaneSegmentation__voxel_mask
+        required: false
       reference_images:
         name: reference_images
         description: Image stacks that the segmentation masks apply to.
@@ -260,6 +262,38 @@ classes:
         range: string
         required: true
         equals_string: pixel_mask_index
+  PlaneSegmentation__pixel_mask:
+    name: PlaneSegmentation__pixel_mask
+    description: 'Pixel masks for each ROI: a list of indices and weights for the
+      ROI. Pixel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(pixel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: pixel_mask
+      x:
+        name: x
+        description: Pixel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Pixel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the pixel.
+        multivalued: false
+        range: float32
+        required: false
   PlaneSegmentation__voxel_mask_index:
     name: PlaneSegmentation__voxel_mask_index
     description: Index into voxel_mask.
@@ -272,6 +306,44 @@ classes:
         range: string
         required: true
         equals_string: voxel_mask_index
+  PlaneSegmentation__voxel_mask:
+    name: PlaneSegmentation__voxel_mask
+    description: 'Voxel masks for each ROI: a list of indices and weights for the
+      ROI. Voxel masks are concatenated and parsing of this dataset is maintained
+      by the PlaneSegmentation'
+    is_a: VectorData
+    attributes:
+      name:
+        name: name
+        ifabsent: string(voxel_mask)
+        identifier: true
+        range: string
+        required: true
+        equals_string: voxel_mask
+      x:
+        name: x
+        description: Voxel x-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      y:
+        name: y
+        description: Voxel y-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      z:
+        name: z
+        description: Voxel z-coordinate.
+        multivalued: false
+        range: uint32
+        required: false
+      weight:
+        name: weight
+        description: Weight of the voxel.
+        multivalued: false
+        range: float32
+        required: false
   ImagingPlane:
     name: ImagingPlane
     description: An imaging plane and its metadata.

nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_6_0_alpha/core.nwb.retinotopy.yaml

@@ -28,6 +28,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(ImagingRetinotopy)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_1_0/hdmf-common.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_1_0/hdmf-common.table.yaml

@@ -84,6 +84,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(element_id)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_1_2/hdmf-common.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_1_2/hdmf-common.table.yaml

@@ -84,6 +84,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(element_id)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_1_3/hdmf-common.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_1_3/hdmf-common.table.yaml

@@ -112,6 +112,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(element_id)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_5_0/hdmf-common.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_common/v1_5_0/hdmf-common.table.yaml

@@ -84,6 +84,7 @@ classes:
     attributes:
       name:
         name: name
+        ifabsent: string(element_id)
         identifier: true
         range: string
         required: true

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_experimental/v0_1_0/hdmf-experimental.nwb.language.yaml

@@ -140,15 +140,6 @@ enums:
       isodatetime:
         text: isodatetime
 classes:
-  Arraylike:
-    name: Arraylike
-    description: Container for arraylike information held in the dims, shape, and
-      dtype properties.this is a special case to be interpreted by downstream i/o.
-      this class has no slotsand is abstract by default.- Each slot within a subclass
-      indicates a possible dimension.- Only dimensions that are present in all the
-      dimension specifiers in the  original schema are required.- Shape requirements
-      are indicated using max/min cardinalities on the slot.
-    abstract: true
   AnyType:
     name: AnyType
     description: Needed because some classes in hdmf-common are datasets without dtype

nwb_linkml/src/nwb_linkml/schema/linkml/hdmf_experimental/v0_1_0/hdmf-experimental.resources.yaml

@@ -30,46 +30,163 @@ classes:
         description: A table for storing user terms that are used to refer to external
           resources.
         multivalued: false
-        array:
+        range: ExternalResources__keys
-          dimensions:
-          - alias: num_rows
-        range: AnyType
         required: true
       entities:
         name: entities
         description: A table for mapping user terms (i.e., keys) to resource entities.
         multivalued: false
-        array:
+        range: ExternalResources__entities
-          dimensions:
-          - alias: num_rows
-        range: AnyType
         required: true
       resources:
         name: resources
         description: A table for mapping user terms (i.e., keys) to resource entities.
         multivalued: false
-        array:
+        range: ExternalResources__resources
-          dimensions:
-          - alias: num_rows
-        range: AnyType
         required: true
       objects:
         name: objects
         description: A table for identifying which objects in a file contain references
           to external resources.
         multivalued: false
-        array:
+        range: ExternalResources__objects
-          dimensions:
-          - alias: num_rows
-        range: AnyType
         required: true
       object_keys:
         name: object_keys
         description: A table for identifying which objects use which keys.
         multivalued: false
-        array:
+        range: ExternalResources__object_keys
-          dimensions:
-          - alias: num_rows
-        range: AnyType
         required: true
     tree_root: true
+  ExternalResources__keys:
+    name: ExternalResources__keys
+    description: A table for storing user terms that are used to refer to external
+      resources.
+    is_a: Data
+    attributes:
+      name:
+        name: name
+        ifabsent: string(keys)
+        identifier: true
+        range: string
+        required: true
+        equals_string: keys
+      key:
+        name: key
+        description: The user term that maps to one or more resources in the 'resources'
+          table.
+        multivalued: false
+        range: text
+        required: true
+  ExternalResources__entities:
+    name: ExternalResources__entities
+    description: A table for mapping user terms (i.e., keys) to resource entities.
+    is_a: Data
+    attributes:
+      name:
+        name: name
+        ifabsent: string(entities)
+        identifier: true
+        range: string
+        required: true
+        equals_string: entities
+      keys_idx:
+        name: keys_idx
+        description: The index to the key in the 'keys' table.
+        multivalued: false
+        range: uint
+        required: true
+      resources_idx:
+        name: resources_idx
+        description: The index into the 'resources' table
+        multivalued: false
+        range: uint
+        required: true
+      entity_id:
+        name: entity_id
+        description: The unique identifier entity.
+        multivalued: false
+        range: text
+        required: true
+      entity_uri:
+        name: entity_uri
+        description: The URI for the entity this reference applies to. This can be
+          an empty string.
+        multivalued: false
+        range: text
+        required: true
+  ExternalResources__resources:
+    name: ExternalResources__resources
+    description: A table for mapping user terms (i.e., keys) to resource entities.
+    is_a: Data
+    attributes:
+      name:
+        name: name
+        ifabsent: string(resources)
+        identifier: true
+        range: string
+        required: true
+        equals_string: resources
+      resource:
+        name: resource
+        description: The name of the resource.
+        multivalued: false
+        range: text
+        required: true
+      resource_uri:
+        name: resource_uri
+        description: The URI for the resource. This can be an empty string.
+        multivalued: false
+        range: text
+        required: true
+  ExternalResources__objects:
+    name: ExternalResources__objects
+    description: A table for identifying which objects in a file contain references
+      to external resources.
+    is_a: Data
+    attributes:
+      name:
+        name: name
+        ifabsent: string(objects)
+        identifier: true
+        range: string
+        required: true
+        equals_string: objects
+      object_id:
+        name: object_id
+        description: The UUID for the object.
+        multivalued: false
+        range: text
+        required: true
+      field:
+        name: field
+        description: The field of the object. This can be an empty string if the object
+          is a dataset and the field is the dataset values.
+        multivalued: false
+        range: text
+        required: true
+  ExternalResources__object_keys:
+    name: ExternalResources__object_keys
+    description: A table for identifying which objects use which keys.
+    is_a: Data
+    attributes:
+      name:
+        name: name
+        ifabsent: string(object_keys)
+        identifier: true
+        range: string
+        required: true
+        equals_string: object_keys
+      objects_idx:
+        name: objects_idx
+        description: The index to the 'objects' table for the object that holds the
+          key.
+        multivalued: false
+        range: uint
+        required: true
+      keys_idx:
+        name: keys_idx
+        description: The index to the 'keys' table for the key.
+        multivalued: false
+        range: uint
+        required: true