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sneakers-the-rat 2024-07-01 16:35:10 -07:00
parent 48b883a588
commit 25536c053e
Signed by untrusted user who does not match committer: jonny
GPG key ID: 6DCB96EF1E4D232D
3 changed files with 1839 additions and 5 deletions
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6
docs/pyproject.toml
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@ -8,16 +8,14 @@ authors = [
license = {text = "AGPL-3.0"} license = {text = "AGPL-3.0"}
requires-python = "<3.13,>=3.10" requires-python = "<3.13,>=3.10"
dependencies = [ dependencies = [
# "nwb-linkml", "nwb-linkml @ file:///${PROJECT_ROOT}/../nwb_linkml",
# "nwb-schema-language", "nwb-schema-language @ file:///${PROJECT_ROOT}/../nwb_schema_language",
"sphinx<8.0.0,>=7.2.5", "sphinx<8.0.0,>=7.2.5",
"furo>=2023.8.19", "furo>=2023.8.19",
"myst-parser>=2.0.0", "myst-parser>=2.0.0",
"autodoc-pydantic>=2.0.1", "autodoc-pydantic>=2.0.1",
"nptyping>=2.5.0", "nptyping>=2.5.0",
"sphinx-autobuild>=2021.3.14", "sphinx-autobuild>=2021.3.14",
"nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml",
"nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language",
"sphinx-design>=0.5.0", "sphinx-design>=0.5.0",
"sphinx-togglebutton>=0.3.2", "sphinx-togglebutton>=0.3.2",
"myst-nb @ git+https://github.com/executablebooks/MyST-NB.git", "myst-nb @ git+https://github.com/executablebooks/MyST-NB.git",

1836
nwb_linkml/pdm.lock Normal file
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2
nwb_linkml/src/nwb_linkml/io/hdf5.py
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@ -326,7 +326,7 @@ def truncate_file(source: Path, target: Optional[Path] = None, n:int=10) -> Path
# use h5repack to actually remove the items from the dataset # use h5repack to actually remove the items from the dataset
if shutil.which('h5repack') is None: if shutil.which('h5repack') is None:
warnings.warn('Truncated file made, but since h5repack not found in path, file won't be any smaller') warnings.warn("Truncated file made, but since h5repack not found in path, file won't be any smaller")
return target return target
print('Repacking hdf5...') print('Repacking hdf5...')