diff --git a/nwb_linkml/pdm.lock b/nwb_linkml/pdm.lock
index 0328b01..841093c 100644
--- a/nwb_linkml/pdm.lock
+++ b/nwb_linkml/pdm.lock
@@ -2,17 +2,17 @@
 # It is not intended for manual editing.
 
 [metadata]
-groups = ["default"]
+groups = ["default", "dev"]
 strategy = ["cross_platform", "inherit_metadata"]
 lock_version = "4.4.2"
-content_hash = "sha256:46c7731459553e929a84419fea83548ffe61846a9a0aabe8b0960b4f293a06f9"
+content_hash = "sha256:8400c0a688063dce308afa6d2db8500688953be4199c186f592c9f0ca84ad1f9"
 
 [[package]]
 name = "annotated-types"
 version = "0.7.0"
 requires_python = ">=3.8"
 summary = "Reusable constraint types to use with typing.Annotated"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
     {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
@@ -22,7 +22,7 @@ files = [
 name = "antlr4-python3-runtime"
 version = "4.9.3"
 summary = "ANTLR 4.9.3 runtime for Python 3.7"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
 ]
@@ -32,7 +32,7 @@ name = "arrow"
 version = "1.3.0"
 requires_python = ">=3.8"
 summary = "Better dates & times for Python"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "python-dateutil>=2.7.0",
     "types-python-dateutil>=2.8.10",
@@ -47,18 +47,50 @@ name = "attrs"
 version = "23.2.0"
 requires_python = ">=3.7"
 summary = "Classes Without Boilerplate"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
     {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
 ]
 
+[[package]]
+name = "black"
+version = "24.4.2"
+requires_python = ">=3.8"
+summary = "The uncompromising code formatter."
+groups = ["dev"]
+dependencies = [
+    "click>=8.0.0",
+    "mypy-extensions>=0.4.3",
+    "packaging>=22.0",
+    "pathspec>=0.9.0",
+    "platformdirs>=2",
+    "tomli>=1.1.0; python_version < \"3.11\"",
+    "typing-extensions>=4.0.1; python_version < \"3.11\"",
+]
+files = [
+    {file = "black-24.4.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:dd1b5a14e417189db4c7b64a6540f31730713d173f0b63e55fabd52d61d8fdce"},
+    {file = "black-24.4.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8e537d281831ad0e71007dcdcbe50a71470b978c453fa41ce77186bbe0ed6021"},
+    {file = "black-24.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:eaea3008c281f1038edb473c1aa8ed8143a5535ff18f978a318f10302b254063"},
+    {file = "black-24.4.2-cp310-cp310-win_amd64.whl", hash = "sha256:7768a0dbf16a39aa5e9a3ded568bb545c8c2727396d063bbaf847df05b08cd96"},
+    {file = "black-24.4.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:257d724c2c9b1660f353b36c802ccece186a30accc7742c176d29c146df6e474"},
+    {file = "black-24.4.2-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:bdde6f877a18f24844e381d45e9947a49e97933573ac9d4345399be37621e26c"},
+    {file = "black-24.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e151054aa00bad1f4e1f04919542885f89f5f7d086b8a59e5000e6c616896ffb"},
+    {file = "black-24.4.2-cp311-cp311-win_amd64.whl", hash = "sha256:7e122b1c4fb252fd85df3ca93578732b4749d9be076593076ef4d07a0233c3e1"},
+    {file = "black-24.4.2-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:accf49e151c8ed2c0cdc528691838afd217c50412534e876a19270fea1e28e2d"},
+    {file = "black-24.4.2-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:88c57dc656038f1ab9f92b3eb5335ee9b021412feaa46330d5eba4e51fe49b04"},
+    {file = "black-24.4.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:be8bef99eb46d5021bf053114442914baeb3649a89dc5f3a555c88737e5e98fc"},
+    {file = "black-24.4.2-cp312-cp312-win_amd64.whl", hash = "sha256:415e686e87dbbe6f4cd5ef0fbf764af7b89f9057b97c908742b6008cc554b9c0"},
+    {file = "black-24.4.2-py3-none-any.whl", hash = "sha256:d36ed1124bb81b32f8614555b34cc4259c3fbc7eec17870e8ff8ded335b58d8c"},
+    {file = "black-24.4.2.tar.gz", hash = "sha256:c872b53057f000085da66a19c55d68f6f8ddcac2642392ad3a355878406fbd4d"},
+]
+
 [[package]]
 name = "blosc2"
 version = "2.7.0"
 requires_python = "<4,>=3.10"
 summary = "Python wrapper for the C-Blosc2 library"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "msgpack",
     "ndindex>=1.4",
@@ -96,7 +128,7 @@ name = "certifi"
 version = "2024.6.2"
 requires_python = ">=3.6"
 summary = "Python package for providing Mozilla's CA Bundle."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"},
     {file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"},
@@ -106,7 +138,7 @@ files = [
 name = "cfgraph"
 version = "0.2.1"
 summary = "rdflib collections flattening graph"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "rdflib>=0.4.2",
 ]
@@ -119,7 +151,7 @@ name = "chardet"
 version = "5.2.0"
 requires_python = ">=3.7"
 summary = "Universal encoding detector for Python 3"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
     {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
@@ -130,7 +162,7 @@ name = "charset-normalizer"
 version = "3.3.2"
 requires_python = ">=3.7.0"
 summary = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"},
     {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:25baf083bf6f6b341f4121c2f3c548875ee6f5339300e08be3f2b2ba1721cdd3"},
@@ -186,7 +218,7 @@ name = "click"
 version = "8.1.7"
 requires_python = ">=3.7"
 summary = "Composable command line interface toolkit"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "colorama; platform_system == \"Windows\"",
 ]
@@ -200,7 +232,7 @@ name = "cloudpickle"
 version = "3.0.0"
 requires_python = ">=3.8"
 summary = "Pickler class to extend the standard pickle.Pickler functionality"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "cloudpickle-3.0.0-py3-none-any.whl", hash = "sha256:246ee7d0c295602a036e86369c77fecda4ab17b506496730f2f576d9016fd9c7"},
     {file = "cloudpickle-3.0.0.tar.gz", hash = "sha256:996d9a482c6fb4f33c1a35335cf8afd065d2a56e973270364840712d9131a882"},
@@ -211,19 +243,99 @@ name = "colorama"
 version = "0.4.6"
 requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 summary = "Cross-platform colored terminal text."
-groups = ["default"]
-marker = "platform_system == \"Windows\" or sys_platform == \"win32\""
+groups = ["default", "dev"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
 
+[[package]]
+name = "coverage"
+version = "6.5.0"
+requires_python = ">=3.7"
+summary = "Code coverage measurement for Python"
+groups = ["dev"]
+files = [
+    {file = "coverage-6.5.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ef8674b0ee8cc11e2d574e3e2998aea5df5ab242e012286824ea3c6970580e53"},
+    {file = "coverage-6.5.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:784f53ebc9f3fd0e2a3f6a78b2be1bd1f5575d7863e10c6e12504f240fd06660"},
+    {file = "coverage-6.5.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b4a5be1748d538a710f87542f22c2cad22f80545a847ad91ce45e77417293eb4"},
+    {file = "coverage-6.5.0-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:83516205e254a0cb77d2d7bb3632ee019d93d9f4005de31dca0a8c3667d5bc04"},
+    {file = "coverage-6.5.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:af4fffaffc4067232253715065e30c5a7ec6faac36f8fc8d6f64263b15f74db0"},
+    {file = "coverage-6.5.0-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:97117225cdd992a9c2a5515db1f66b59db634f59d0679ca1fa3fe8da32749cae"},
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+]
+
+[[package]]
+name = "coverage"
+version = "6.5.0"
+extras = ["toml"]
+requires_python = ">=3.7"
+summary = "Code coverage measurement for Python"
+groups = ["dev"]
+dependencies = [
+    "coverage==6.5.0",
+    "tomli; python_full_version <= \"3.11.0a6\"",
+]
+files = [
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+]
+
+[[package]]
+name = "coveralls"
+version = "3.3.1"
+requires_python = ">= 3.5"
+summary = "Show coverage stats online via coveralls.io"
+groups = ["dev"]
+dependencies = [
+    "coverage!=6.0.*,!=6.1,!=6.1.1,<7.0,>=4.1",
+    "docopt>=0.6.1",
+    "requests>=1.0.0",
+]
+files = [
+    {file = "coveralls-3.3.1-py2.py3-none-any.whl", hash = "sha256:f42015f31d386b351d4226389b387ae173207058832fbf5c8ec4b40e27b16026"},
+    {file = "coveralls-3.3.1.tar.gz", hash = "sha256:b32a8bb5d2df585207c119d6c01567b81fba690c9c10a753bfe27a335bfc43ea"},
+]
+
 [[package]]
 name = "curies"
 version = "0.7.9"
 requires_python = ">=3.8"
 summary = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "pydantic",
     "pytrie",
@@ -239,7 +351,7 @@ name = "dask"
 version = "2024.6.2"
 requires_python = ">=3.9"
 summary = "Parallel PyData with Task Scheduling"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "click>=8.1",
     "cloudpickle>=1.5.0",
@@ -260,7 +372,7 @@ name = "deprecated"
 version = "1.2.14"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 summary = "Python @deprecated decorator to deprecate old python classes, functions or methods."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "wrapt<2,>=1.10",
 ]
@@ -269,12 +381,21 @@ files = [
     {file = "Deprecated-1.2.14.tar.gz", hash = "sha256:e5323eb936458dccc2582dc6f9c322c852a775a27065ff2b0c4970b9d53d01b3"},
 ]
 
+[[package]]
+name = "docopt"
+version = "0.6.2"
+summary = "Pythonic argument parser, that will make you smile"
+groups = ["dev"]
+files = [
+    {file = "docopt-0.6.2.tar.gz", hash = "sha256:49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491"},
+]
+
 [[package]]
 name = "et-xmlfile"
 version = "1.1.0"
 requires_python = ">=3.6"
 summary = "An implementation of lxml.xmlfile for the standard library"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "et_xmlfile-1.1.0-py3-none-any.whl", hash = "sha256:a2ba85d1d6a74ef63837eed693bcb89c3f752169b0e3e7ae5b16ca5e1b3deada"},
     {file = "et_xmlfile-1.1.0.tar.gz", hash = "sha256:8eb9e2bc2f8c97e37a2dc85a09ecdcdec9d8a396530a6d5a33b30b9a92da0c5c"},
@@ -285,7 +406,7 @@ name = "exceptiongroup"
 version = "1.2.1"
 requires_python = ">=3.7"
 summary = "Backport of PEP 654 (exception groups)"
-groups = ["default"]
+groups = ["default", "dev"]
 marker = "python_version < \"3.11\""
 files = [
     {file = "exceptiongroup-1.2.1-py3-none-any.whl", hash = "sha256:5258b9ed329c5bbdd31a309f53cbfb0b155341807f6ff7606a1e801a891b29ad"},
@@ -297,7 +418,7 @@ name = "fqdn"
 version = "1.5.1"
 requires_python = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 summary = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"},
     {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"},
@@ -308,18 +429,40 @@ name = "fsspec"
 version = "2024.6.1"
 requires_python = ">=3.8"
 summary = "File-system specification"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "fsspec-2024.6.1-py3-none-any.whl", hash = "sha256:3cb443f8bcd2efb31295a5b9fdb02aee81d8452c80d28f97a6d0959e6cee101e"},
     {file = "fsspec-2024.6.1.tar.gz", hash = "sha256:fad7d7e209dd4c1208e3bbfda706620e0da5142bebbd9c384afb95b07e798e49"},
 ]
 
+[[package]]
+name = "future-fstrings"
+version = "1.2.0"
+requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+summary = "A backport of fstrings to python<3.6"
+groups = ["dev"]
+files = [
+    {file = "future_fstrings-1.2.0-py2.py3-none-any.whl", hash = "sha256:90e49598b553d8746c4dc7d9442e0359d038c3039d802c91c0a55505da318c63"},
+    {file = "future_fstrings-1.2.0.tar.gz", hash = "sha256:6cf41cbe97c398ab5a81168ce0dbb8ad95862d3caf23c21e4430627b90844089"},
+]
+
+[[package]]
+name = "gprof2dot"
+version = "2024.6.6"
+requires_python = ">=3.8"
+summary = "Generate a dot graph from the output of several profilers."
+groups = ["dev"]
+files = [
+    {file = "gprof2dot-2024.6.6-py2.py3-none-any.whl", hash = "sha256:45b14ad7ce64e299c8f526881007b9eb2c6b75505d5613e96e66ee4d5ab33696"},
+    {file = "gprof2dot-2024.6.6.tar.gz", hash = "sha256:fa1420c60025a9eb7734f65225b4da02a10fc6dd741b37fa129bc6b41951e5ab"},
+]
+
 [[package]]
 name = "graphviz"
 version = "0.20.3"
 requires_python = ">=3.8"
 summary = "Simple Python interface for Graphviz"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "graphviz-0.20.3-py3-none-any.whl", hash = "sha256:81f848f2904515d8cd359cc611faba817598d2feaac4027b266aa3eda7b3dde5"},
     {file = "graphviz-0.20.3.zip", hash = "sha256:09d6bc81e6a9fa392e7ba52135a9d49f1ed62526f96499325930e87ca1b5925d"},
@@ -330,7 +473,7 @@ name = "greenlet"
 version = "3.0.3"
 requires_python = ">=3.7"
 summary = "Lightweight in-process concurrent programming"
-groups = ["default"]
+groups = ["default", "dev"]
 marker = "(platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\") and python_version < \"3.13\""
 files = [
     {file = "greenlet-3.0.3-cp310-cp310-macosx_11_0_universal2.whl", hash = "sha256:9da2bd29ed9e4f15955dd1595ad7bc9320308a3b766ef7f837e23ad4b4aac31a"},
@@ -368,7 +511,7 @@ name = "h5py"
 version = "3.11.0"
 requires_python = ">=3.8"
 summary = "Read and write HDF5 files from Python"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "numpy>=1.17.3",
 ]
@@ -393,7 +536,7 @@ name = "hbreader"
 version = "0.9.1"
 requires_python = ">=3.7"
 summary = "Honey Badger reader - a generic file/url/string open and read tool"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "hbreader-0.9.1-py3-none-any.whl", hash = "sha256:9a6e76c9d1afc1b977374a5dc430a1ebb0ea0488205546d4678d6e31cc5f6801"},
     {file = "hbreader-0.9.1.tar.gz", hash = "sha256:d2c132f8ba6276d794c66224c3297cec25c8079d0a4cf019c061611e0a3b94fa"},
@@ -404,7 +547,7 @@ name = "idna"
 version = "3.7"
 requires_python = ">=3.5"
 summary = "Internationalized Domain Names in Applications (IDNA)"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"},
     {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"},
@@ -415,7 +558,7 @@ name = "importlib-metadata"
 version = "8.0.0"
 requires_python = ">=3.8"
 summary = "Read metadata from Python packages"
-groups = ["default"]
+groups = ["default", "dev"]
 marker = "python_version < \"3.12\""
 dependencies = [
     "zipp>=0.5",
@@ -430,7 +573,7 @@ name = "iniconfig"
 version = "2.0.0"
 requires_python = ">=3.7"
 summary = "brain-dead simple config-ini parsing"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"},
     {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
@@ -440,7 +583,7 @@ files = [
 name = "isodate"
 version = "0.6.1"
 summary = "An ISO 8601 date/time/duration parser and formatter"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "six",
 ]
@@ -454,7 +597,7 @@ name = "isoduration"
 version = "20.11.0"
 requires_python = ">=3.7"
 summary = "Operations with ISO 8601 durations"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "arrow>=0.15.0",
 ]
@@ -468,7 +611,7 @@ name = "jinja2"
 version = "3.1.4"
 requires_python = ">=3.7"
 summary = "A very fast and expressive template engine."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "MarkupSafe>=2.0",
 ]
@@ -482,7 +625,7 @@ name = "json-flattener"
 version = "0.1.9"
 requires_python = ">=3.7.0"
 summary = "Python library for denormalizing nested dicts or json objects to tables and back"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "click",
     "pyyaml",
@@ -496,7 +639,7 @@ files = [
 name = "jsonasobj"
 version = "1.3.1"
 summary = "JSON as python objects"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "jsonasobj-1.3.1-py3-none-any.whl", hash = "sha256:b9e329dc1ceaae7cf5d5b214684a0b100e0dad0be6d5bbabac281ec35ddeca65"},
     {file = "jsonasobj-1.3.1.tar.gz", hash = "sha256:d52e0544a54a08f6ea3f77fa3387271e3648655e0eace2f21e825c26370e44a2"},
@@ -507,7 +650,7 @@ name = "jsonasobj2"
 version = "1.0.4"
 requires_python = ">=3.6"
 summary = "JSON as python objects - version 2"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "hbreader",
 ]
@@ -521,7 +664,7 @@ name = "jsonpatch"
 version = "1.33"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
 summary = "Apply JSON-Patches (RFC 6902) "
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "jsonpointer>=1.9",
 ]
@@ -534,7 +677,7 @@ files = [
 name = "jsonpath-ng"
 version = "1.6.1"
 summary = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "ply",
 ]
@@ -548,7 +691,7 @@ name = "jsonpointer"
 version = "3.0.0"
 requires_python = ">=3.7"
 summary = "Identify specific nodes in a JSON document (RFC 6901) "
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"},
     {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"},
@@ -559,7 +702,7 @@ name = "jsonschema"
 version = "4.22.0"
 requires_python = ">=3.8"
 summary = "An implementation of JSON Schema validation for Python"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "attrs>=22.2.0",
     "jsonschema-specifications>=2023.03.6",
@@ -576,7 +719,7 @@ name = "jsonschema-specifications"
 version = "2023.12.1"
 requires_python = ">=3.8"
 summary = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "referencing>=0.31.0",
 ]
@@ -591,7 +734,7 @@ version = "4.22.0"
 extras = ["format"]
 requires_python = ">=3.8"
 summary = "An implementation of JSON Schema validation for Python"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "fqdn",
     "idna",
@@ -613,7 +756,7 @@ name = "linkml"
 version = "1.7.10"
 requires_python = "<4.0.0,>=3.8.1"
 summary = "Linked Open Data Modeling Language"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "antlr4-python3-runtime<4.10,>=4.9.0",
     "click>=7.0",
@@ -650,7 +793,7 @@ name = "linkml-dataops"
 version = "0.1.0"
 requires_python = ">=3.7"
 summary = "LinkML Data Operations API"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "jinja2",
     "jsonpatch",
@@ -668,7 +811,7 @@ name = "linkml-runtime"
 version = "1.7.7"
 requires_python = "<4.0,>=3.8"
 summary = "Runtime environment for LinkML, the Linked open data modeling language"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "click",
     "curies>=0.5.4",
@@ -694,7 +837,7 @@ name = "locket"
 version = "1.0.0"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 summary = "File-based locks for Python on Linux and Windows"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "locket-1.0.0-py2.py3-none-any.whl", hash = "sha256:b6c819a722f7b6bd955b80781788e4a66a55628b858d347536b7e81325a3a5e3"},
     {file = "locket-1.0.0.tar.gz", hash = "sha256:5c0d4c052a8bbbf750e056a8e65ccd309086f4f0f18a2eac306a8dfa4112a632"},
@@ -705,7 +848,7 @@ name = "markdown-it-py"
 version = "3.0.0"
 requires_python = ">=3.8"
 summary = "Python port of markdown-it. Markdown parsing, done right!"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "mdurl~=0.1",
 ]
@@ -719,7 +862,7 @@ name = "markupsafe"
 version = "2.1.5"
 requires_python = ">=3.7"
 summary = "Safely add untrusted strings to HTML/XML markup."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a17a92de5231666cfbe003f0e4b9b3a7ae3afb1ec2845aadc2bacc93ff85febc"},
     {file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:72b6be590cc35924b02c78ef34b467da4ba07e4e0f0454a2c5907f473fc50ce5"},
@@ -759,7 +902,7 @@ name = "mdurl"
 version = "0.1.2"
 requires_python = ">=3.7"
 summary = "Markdown URL utilities"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
@@ -770,7 +913,7 @@ name = "msgpack"
 version = "1.0.8"
 requires_python = ">=3.8"
 summary = "MessagePack serializer"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "msgpack-1.0.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:505fe3d03856ac7d215dbe005414bc28505d26f0c128906037e66d98c4e95868"},
     {file = "msgpack-1.0.8-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e6b7842518a63a9f17107eb176320960ec095a8ee3b4420b5f688e24bf50c53c"},
@@ -808,23 +951,45 @@ files = [
     {file = "msgpack-1.0.8.tar.gz", hash = "sha256:95c02b0e27e706e48d0e5426d1710ca78e0f0628d6e89d5b5a5b91a5f12274f3"},
 ]
 
+[[package]]
+name = "mypy-extensions"
+version = "1.0.0"
+requires_python = ">=3.5"
+summary = "Type system extensions for programs checked with the mypy type checker."
+groups = ["dev"]
+files = [
+    {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
+    {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
+]
+
 [[package]]
 name = "ndindex"
 version = "1.8"
 requires_python = ">=3.8"
 summary = "A Python library for manipulating indices of ndarrays."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "ndindex-1.8-py3-none-any.whl", hash = "sha256:b5132cd331f3e4106913ed1a974a3e355967a5991543c2f512b40cb8bb9f50b8"},
     {file = "ndindex-1.8.tar.gz", hash = "sha256:5fc87ebc784605f01dd5367374cb40e8da8f2c30988968990066c5098a7eebe8"},
 ]
 
+[[package]]
+name = "networkx"
+version = "3.3"
+requires_python = ">=3.10"
+summary = "Python package for creating and manipulating graphs and networks"
+groups = ["dev"]
+files = [
+    {file = "networkx-3.3-py3-none-any.whl", hash = "sha256:28575580c6ebdaf4505b22c6256a2b9de86b316dc63ba9e93abde3d78dfdbcf2"},
+    {file = "networkx-3.3.tar.gz", hash = "sha256:0c127d8b2f4865f59ae9cb8aafcd60b5c70f3241ebd66f7defad7c4ab90126c9"},
+]
+
 [[package]]
 name = "nptyping"
 version = "2.5.0"
 requires_python = ">=3.7"
 summary = "Type hints for NumPy."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "numpy<2.0.0,>=1.20.0; python_version >= \"3.8\"",
 ]
@@ -838,7 +1003,7 @@ name = "numexpr"
 version = "2.10.1"
 requires_python = ">=3.9"
 summary = "Fast numerical expression evaluator for NumPy"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "numpy>=1.23.0",
 ]
@@ -872,7 +1037,7 @@ name = "numpy"
 version = "1.26.4"
 requires_python = ">=3.9"
 summary = "Fundamental package for array computing in Python"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "numpy-1.26.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9ff0f4f29c51e2803569d7a51c2304de5554655a60c5d776e35b4a41413830d0"},
     {file = "numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e4ee3380d6de9c9ec04745830fd9e2eccb3e6cf790d39d7b98ffd19b0dd754a"},
@@ -909,7 +1074,7 @@ name = "nwb-schema-language"
 version = "0.1.3"
 requires_python = ">=3.9,<4.0"
 summary = "Translation of the nwb-schema-language to LinkML"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "linkml-runtime<2.0.0,>=1.1.24",
     "pydantic<3.0.0,>=2.3.0",
@@ -924,7 +1089,7 @@ name = "openpyxl"
 version = "3.1.5"
 requires_python = ">=3.8"
 summary = "A Python library to read/write Excel 2010 xlsx/xlsm files"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "et-xmlfile",
 ]
@@ -938,7 +1103,7 @@ name = "packaging"
 version = "24.1"
 requires_python = ">=3.8"
 summary = "Core utilities for Python packages"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
     {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
@@ -948,7 +1113,7 @@ files = [
 name = "parse"
 version = "1.20.2"
 summary = "parse() is the opposite of format()"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "parse-1.20.2-py2.py3-none-any.whl", hash = "sha256:967095588cb802add9177d0c0b6133b5ba33b1ea9007ca800e526f42a85af558"},
     {file = "parse-1.20.2.tar.gz", hash = "sha256:b41d604d16503c79d81af5165155c0b20f6c8d6c559efa66b4b695c3e5a0a0ce"},
@@ -959,7 +1124,7 @@ name = "partd"
 version = "1.4.2"
 requires_python = ">=3.9"
 summary = "Appendable key-value storage"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "locket",
     "toolz",
@@ -969,12 +1134,34 @@ files = [
     {file = "partd-1.4.2.tar.gz", hash = "sha256:d022c33afbdc8405c226621b015e8067888173d85f7f5ecebb3cafed9a20f02c"},
 ]
 
+[[package]]
+name = "pathspec"
+version = "0.12.1"
+requires_python = ">=3.8"
+summary = "Utility library for gitignore style pattern matching of file paths."
+groups = ["dev"]
+files = [
+    {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"},
+    {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
+]
+
+[[package]]
+name = "platformdirs"
+version = "4.2.2"
+requires_python = ">=3.8"
+summary = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
+groups = ["dev"]
+files = [
+    {file = "platformdirs-4.2.2-py3-none-any.whl", hash = "sha256:2d7a1657e36a80ea911db832a8a6ece5ee53d8de21edd5cc5879af6530b1bfee"},
+    {file = "platformdirs-4.2.2.tar.gz", hash = "sha256:38b7b51f512eed9e84a22788b4bce1de17c0adb134d6becb09836e37d8654cd3"},
+]
+
 [[package]]
 name = "pluggy"
 version = "1.5.0"
 requires_python = ">=3.8"
 summary = "plugin and hook calling mechanisms for python"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
     {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
@@ -984,7 +1171,7 @@ files = [
 name = "ply"
 version = "3.11"
 summary = "Python Lex & Yacc"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "ply-3.11-py2.py3-none-any.whl", hash = "sha256:096f9b8350b65ebd2fd1346b12452efe5b9607f7482813ffca50c22722a807ce"},
     {file = "ply-3.11.tar.gz", hash = "sha256:00c7c1aaa88358b9c765b6d3000c6eec0ba42abca5351b095321aef446081da3"},
@@ -995,7 +1182,7 @@ name = "prefixcommons"
 version = "0.1.12"
 requires_python = ">=3.7,<4.0"
 summary = "A python API for working with ID prefixes"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "PyYAML<7.0,>=6.0",
     "click<9.0.0,>=8.1.3",
@@ -1012,7 +1199,7 @@ name = "prefixmaps"
 version = "0.2.4"
 requires_python = "<4.0,>=3.8"
 summary = "A python library for retrieving semantic prefix maps"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "curies>=0.5.3",
     "pyyaml>=5.3.1",
@@ -1026,7 +1213,7 @@ files = [
 name = "py-cpuinfo"
 version = "9.0.0"
 summary = "Get CPU info with pure Python"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "py-cpuinfo-9.0.0.tar.gz", hash = "sha256:3cdbbf3fac90dc6f118bfd64384f309edeadd902d7c8fb17f02ffa1fc3f49690"},
     {file = "py_cpuinfo-9.0.0-py3-none-any.whl", hash = "sha256:859625bc251f64e21f077d099d4162689c762b5d6a4c3c97553d56241c9674d5"},
@@ -1037,7 +1224,7 @@ name = "pydantic"
 version = "2.8.0"
 requires_python = ">=3.8"
 summary = "Data validation using Python type hints"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "annotated-types>=0.4.0",
     "pydantic-core==2.20.0",
@@ -1053,7 +1240,7 @@ name = "pydantic-core"
 version = "2.20.0"
 requires_python = ">=3.8"
 summary = "Core functionality for Pydantic validation and serialization"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "typing-extensions!=4.7.0,>=4.6.0",
 ]
@@ -1118,7 +1305,7 @@ name = "pydantic-settings"
 version = "2.3.4"
 requires_python = ">=3.8"
 summary = "Settings management using Pydantic"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "pydantic>=2.7.0",
     "python-dotenv>=0.21.0",
@@ -1133,7 +1320,7 @@ name = "pygments"
 version = "2.18.0"
 requires_python = ">=3.8"
 summary = "Pygments is a syntax highlighting package written in Python."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "pygments-2.18.0-py3-none-any.whl", hash = "sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a"},
     {file = "pygments-2.18.0.tar.gz", hash = "sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199"},
@@ -1143,7 +1330,7 @@ files = [
 name = "pyjsg"
 version = "0.11.10"
 summary = "Python JSON Schema Grammar interpreter"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "antlr4-python3-runtime~=4.9.3",
     "jsonasobj>=1.2.1",
@@ -1158,7 +1345,7 @@ name = "pyparsing"
 version = "3.1.2"
 requires_python = ">=3.6.8"
 summary = "pyparsing module - Classes and methods to define and execute parsing grammars"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "pyparsing-3.1.2-py3-none-any.whl", hash = "sha256:f9db75911801ed778fe61bb643079ff86601aca99fcae6345aa67292038fb742"},
     {file = "pyparsing-3.1.2.tar.gz", hash = "sha256:a1bac0ce561155ecc3ed78ca94d3c9378656ad4c94c1270de543f621420f94ad"},
@@ -1169,7 +1356,7 @@ name = "pyshex"
 version = "0.8.1"
 requires_python = ">=3.6"
 summary = "Python ShEx Implementation"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "cfgraph>=0.2.1",
     "chardet",
@@ -1191,7 +1378,7 @@ name = "pyshexc"
 version = "0.9.1"
 requires_python = ">=3.7"
 summary = "PyShExC - Python ShEx compiler"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "antlr4-python3-runtime~=4.9.3",
     "chardet",
@@ -1207,28 +1394,59 @@ files = [
 
 [[package]]
 name = "pytest"
-version = "8.2.2"
-requires_python = ">=3.8"
+version = "7.4.4"
+requires_python = ">=3.7"
 summary = "pytest: simple powerful testing with Python"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "colorama; sys_platform == \"win32\"",
     "exceptiongroup>=1.0.0rc8; python_version < \"3.11\"",
     "iniconfig",
     "packaging",
-    "pluggy<2.0,>=1.5",
-    "tomli>=1; python_version < \"3.11\"",
+    "pluggy<2.0,>=0.12",
+    "tomli>=1.0.0; python_version < \"3.11\"",
 ]
 files = [
-    {file = "pytest-8.2.2-py3-none-any.whl", hash = "sha256:c434598117762e2bd304e526244f67bf66bbd7b5d6cf22138be51ff661980343"},
-    {file = "pytest-8.2.2.tar.gz", hash = "sha256:de4bb8104e201939ccdc688b27a89a7be2079b22e2bd2b07f806b6ba71117977"},
+    {file = "pytest-7.4.4-py3-none-any.whl", hash = "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"},
+    {file = "pytest-7.4.4.tar.gz", hash = "sha256:2cf0005922c6ace4a3e2ec8b4080eb0d9753fdc93107415332f50ce9e7994280"},
+]
+
+[[package]]
+name = "pytest-cov"
+version = "4.1.0"
+requires_python = ">=3.7"
+summary = "Pytest plugin for measuring coverage."
+groups = ["dev"]
+dependencies = [
+    "coverage[toml]>=5.2.1",
+    "pytest>=4.6",
+]
+files = [
+    {file = "pytest-cov-4.1.0.tar.gz", hash = "sha256:3904b13dfbfec47f003b8e77fd5b589cd11904a21ddf1ab38a64f204d6a10ef6"},
+    {file = "pytest_cov-4.1.0-py3-none-any.whl", hash = "sha256:6ba70b9e97e69fcc3fb45bfeab2d0a138fb65c4d0d6a41ef33983ad114be8c3a"},
+]
+
+[[package]]
+name = "pytest-depends"
+version = "1.0.1"
+summary = "Tests that depend on other tests"
+groups = ["dev"]
+dependencies = [
+    "colorama",
+    "future-fstrings",
+    "networkx",
+    "pytest>=3",
+]
+files = [
+    {file = "pytest-depends-1.0.1.tar.gz", hash = "sha256:90a28e2b87b75b18abd128c94015248544acac20e4392e9921e5a86f93319dfe"},
+    {file = "pytest_depends-1.0.1-py3-none-any.whl", hash = "sha256:a1df072bcc93d77aca3f0946903f5fed8af2d9b0056db1dfc9ed5ac164ab0642"},
 ]
 
 [[package]]
 name = "pytest-logging"
 version = "2015.11.4"
 summary = "Configures logging and allows tweaking the log level with a py.test flag"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "pytest>=2.8.1",
 ]
@@ -1236,12 +1454,41 @@ files = [
     {file = "pytest-logging-2015.11.4.tar.gz", hash = "sha256:cec5c85ecf18aab7b2ead5498a31b9f758680ef5a902b9054ab3f2bdbb77c896"},
 ]
 
+[[package]]
+name = "pytest-md"
+version = "0.2.0"
+requires_python = ">=3.6"
+summary = "Plugin for generating Markdown reports for pytest results"
+groups = ["dev"]
+dependencies = [
+    "pytest>=4.2.1",
+]
+files = [
+    {file = "pytest-md-0.2.0.tar.gz", hash = "sha256:3b248d5b360ea5198e05b4f49c7442234812809a63137ec6cdd3643a40cf0112"},
+    {file = "pytest_md-0.2.0-py3-none-any.whl", hash = "sha256:4c4cd16fea6d1485e87ee254558712c804a96d2aa9674b780e7eb8fb6526e1d1"},
+]
+
+[[package]]
+name = "pytest-profiling"
+version = "1.7.0"
+summary = "Profiling plugin for py.test"
+groups = ["dev"]
+dependencies = [
+    "gprof2dot",
+    "pytest",
+    "six",
+]
+files = [
+    {file = "pytest-profiling-1.7.0.tar.gz", hash = "sha256:93938f147662225d2b8bd5af89587b979652426a8a6ffd7e73ec4a23e24b7f29"},
+    {file = "pytest_profiling-1.7.0-py2.py3-none-any.whl", hash = "sha256:999cc9ac94f2e528e3f5d43465da277429984a1c237ae9818f8cfd0b06acb019"},
+]
+
 [[package]]
 name = "python-dateutil"
 version = "2.9.0.post0"
 requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 summary = "Extensions to the standard Python datetime module"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "six>=1.5",
 ]
@@ -1255,7 +1502,7 @@ name = "python-dotenv"
 version = "1.0.1"
 requires_python = ">=3.8"
 summary = "Read key-value pairs from a .env file and set them as environment variables"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "python-dotenv-1.0.1.tar.gz", hash = "sha256:e324ee90a023d808f1959c46bcbc04446a10ced277783dc6ee09987c37ec10ca"},
     {file = "python_dotenv-1.0.1-py3-none-any.whl", hash = "sha256:f7b63ef50f1b690dddf550d03497b66d609393b40b564ed0d674909a68ebf16a"},
@@ -1265,7 +1512,7 @@ files = [
 name = "pytrie"
 version = "0.4.0"
 summary = "A pure Python implementation of the trie data structure."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "sortedcontainers",
 ]
@@ -1279,7 +1526,7 @@ name = "pyyaml"
 version = "6.0.1"
 requires_python = ">=3.6"
 summary = "YAML parser and emitter for Python"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "PyYAML-6.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d858aa552c999bc8a8d57426ed01e40bef403cd8ccdd0fc5f6f04a00414cac2a"},
     {file = "PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:fd66fc5d0da6d9815ba2cebeb4205f95818ff4b79c3ebe268e75d961704af52f"},
@@ -1312,7 +1559,7 @@ name = "rdflib"
 version = "7.0.0"
 requires_python = ">=3.8.1,<4.0.0"
 summary = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "isodate<0.7.0,>=0.6.0",
     "pyparsing<4,>=2.1.0",
@@ -1326,7 +1573,7 @@ files = [
 name = "rdflib-jsonld"
 version = "0.6.1"
 summary = "rdflib extension adding JSON-LD parser and serializer"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "rdflib>=5.0.0",
 ]
@@ -1340,7 +1587,7 @@ name = "rdflib-shim"
 version = "1.0.3"
 requires_python = ">=3.7"
 summary = "Shim for rdflib 5 and 6 incompatibilities"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "rdflib-jsonld==0.6.1",
     "rdflib>=5.0.0",
@@ -1355,7 +1602,7 @@ name = "referencing"
 version = "0.35.1"
 requires_python = ">=3.8"
 summary = "JSON Referencing + Python"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "attrs>=22.2.0",
     "rpds-py>=0.7.0",
@@ -1370,7 +1617,7 @@ name = "requests"
 version = "2.32.3"
 requires_python = ">=3.8"
 summary = "Python HTTP for Humans."
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "certifi>=2017.4.17",
     "charset-normalizer<4,>=2",
@@ -1387,7 +1634,7 @@ name = "rfc3339-validator"
 version = "0.1.4"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 summary = "A pure python RFC3339 validator"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "six",
 ]
@@ -1400,7 +1647,7 @@ files = [
 name = "rfc3987"
 version = "1.3.8"
 summary = "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "rfc3987-1.3.8-py2.py3-none-any.whl", hash = "sha256:10702b1e51e5658843460b189b185c0366d2cf4cff716f13111b0ea9fd2dce53"},
     {file = "rfc3987-1.3.8.tar.gz", hash = "sha256:d3c4d257a560d544e9826b38bc81db676890c79ab9d7ac92b39c7a253d5ca733"},
@@ -1411,7 +1658,7 @@ name = "rich"
 version = "13.7.1"
 requires_python = ">=3.7.0"
 summary = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "markdown-it-py>=2.2.0",
     "pygments<3.0.0,>=2.13.0",
@@ -1426,7 +1673,7 @@ name = "rpds-py"
 version = "0.18.1"
 requires_python = ">=3.8"
 summary = "Python bindings to Rust's persistent data structures (rpds)"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "rpds_py-0.18.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:d31dea506d718693b6b2cffc0648a8929bdc51c70a311b2770f09611caa10d53"},
     {file = "rpds_py-0.18.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:732672fbc449bab754e0b15356c077cc31566df874964d4801ab14f71951ea80"},
@@ -1508,7 +1755,7 @@ name = "ruamel-yaml"
 version = "0.18.6"
 requires_python = ">=3.7"
 summary = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "ruamel-yaml-clib>=0.2.7; platform_python_implementation == \"CPython\" and python_version < \"3.13\"",
 ]
@@ -1522,7 +1769,7 @@ name = "ruamel-yaml-clib"
 version = "0.2.8"
 requires_python = ">=3.6"
 summary = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
-groups = ["default"]
+groups = ["default", "dev"]
 marker = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""
 files = [
     {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:b42169467c42b692c19cf539c38d4602069d8c1505e97b86387fcf7afb766e1d"},
@@ -1552,11 +1799,38 @@ files = [
     {file = "ruamel.yaml.clib-0.2.8.tar.gz", hash = "sha256:beb2e0404003de9a4cab9753a8805a8fe9320ee6673136ed7f04255fe60bb512"},
 ]
 
+[[package]]
+name = "ruff"
+version = "0.5.0"
+requires_python = ">=3.7"
+summary = "An extremely fast Python linter and code formatter, written in Rust."
+groups = ["dev"]
+files = [
+    {file = "ruff-0.5.0-py3-none-linux_armv6l.whl", hash = "sha256:ee770ea8ab38918f34e7560a597cc0a8c9a193aaa01bfbd879ef43cb06bd9c4c"},
+    {file = "ruff-0.5.0-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:38f3b8327b3cb43474559d435f5fa65dacf723351c159ed0dc567f7ab735d1b6"},
+    {file = "ruff-0.5.0-py3-none-macosx_11_0_arm64.whl", hash = "sha256:7594f8df5404a5c5c8f64b8311169879f6cf42142da644c7e0ba3c3f14130370"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:adc7012d6ec85032bc4e9065110df205752d64010bed5f958d25dbee9ce35de3"},
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+    {file = "ruff-0.5.0-py3-none-win_amd64.whl", hash = "sha256:e9118f60091047444c1b90952736ee7b1792910cab56e9b9a9ac20af94cd0440"},
+    {file = "ruff-0.5.0-py3-none-win_arm64.whl", hash = "sha256:ed5c4df5c1fb4518abcb57725b576659542bdbe93366f4f329e8f398c4b71178"},
+    {file = "ruff-0.5.0.tar.gz", hash = "sha256:eb641b5873492cf9bd45bc9c5ae5320648218e04386a5f0c264ad6ccce8226a1"},
+]
+
 [[package]]
 name = "shexjsg"
 version = "0.8.2"
 summary = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "pyjsg>=0.11.10",
 ]
@@ -1570,7 +1844,7 @@ name = "six"
 version = "1.16.0"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 summary = "Python 2 and 3 compatibility utilities"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
     {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"},
@@ -1580,7 +1854,7 @@ files = [
 name = "sortedcontainers"
 version = "2.4.0"
 summary = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "sortedcontainers-2.4.0-py2.py3-none-any.whl", hash = "sha256:a163dcaede0f1c021485e957a39245190e74249897e2ae4b2aa38595db237ee0"},
     {file = "sortedcontainers-2.4.0.tar.gz", hash = "sha256:25caa5a06cc30b6b83d11423433f65d1f9d76c4c6a0c90e3379eaa43b9bfdb88"},
@@ -1591,7 +1865,7 @@ name = "sparqlslurper"
 version = "0.5.1"
 requires_python = ">=3.7.4"
 summary = "SPARQL Slurper for rdflib"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "rdflib-shim",
     "rdflib>=5.0.0",
@@ -1607,7 +1881,7 @@ name = "sparqlwrapper"
 version = "2.0.0"
 requires_python = ">=3.7"
 summary = "SPARQL Endpoint interface to Python"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "rdflib>=6.1.1",
 ]
@@ -1621,7 +1895,7 @@ name = "sqlalchemy"
 version = "2.0.31"
 requires_python = ">=3.7"
 summary = "Database Abstraction Library"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "greenlet!=0.4.17; (platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\") and python_version < \"3.13\"",
     "typing-extensions>=4.6.0",
@@ -1655,12 +1929,23 @@ files = [
     {file = "SQLAlchemy-2.0.31.tar.gz", hash = "sha256:b607489dd4a54de56984a0c7656247504bd5523d9d0ba799aef59d4add009484"},
 ]
 
+[[package]]
+name = "sybil"
+version = "5.0.3"
+requires_python = ">=3.7"
+summary = "Automated testing for the examples in your code and documentation."
+groups = ["dev"]
+files = [
+    {file = "sybil-5.0.3-py3-none-any.whl", hash = "sha256:6f3c30822169895c4fb34c8366bdb132cf62bb68fb1d03d2ebb05282eab08c95"},
+    {file = "sybil-5.0.3.tar.gz", hash = "sha256:20dfe3a35a8d1ffcb4311434d1abf38c030c91064d75ff6b56ddd1060e08e758"},
+]
+
 [[package]]
 name = "tomli"
 version = "2.0.1"
 requires_python = ">=3.7"
 summary = "A lil' TOML parser"
-groups = ["default"]
+groups = ["default", "dev"]
 marker = "python_version < \"3.11\""
 files = [
     {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
@@ -1672,7 +1957,7 @@ name = "toolz"
 version = "0.12.1"
 requires_python = ">=3.7"
 summary = "List processing tools and functional utilities"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "toolz-0.12.1-py3-none-any.whl", hash = "sha256:d22731364c07d72eea0a0ad45bafb2c2937ab6fd38a3507bf55eae8744aa7d85"},
     {file = "toolz-0.12.1.tar.gz", hash = "sha256:ecca342664893f177a13dac0e6b41cbd8ac25a358e5f215316d43e2100224f4d"},
@@ -1683,7 +1968,7 @@ name = "tqdm"
 version = "4.66.4"
 requires_python = ">=3.7"
 summary = "Fast, Extensible Progress Meter"
-groups = ["default"]
+groups = ["default", "dev"]
 dependencies = [
     "colorama; platform_system == \"Windows\"",
 ]
@@ -1697,7 +1982,7 @@ name = "types-python-dateutil"
 version = "2.9.0.20240316"
 requires_python = ">=3.8"
 summary = "Typing stubs for python-dateutil"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"},
     {file = "types_python_dateutil-2.9.0.20240316-py3-none-any.whl", hash = "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"},
@@ -1708,7 +1993,7 @@ name = "typing-extensions"
 version = "4.12.2"
 requires_python = ">=3.8"
 summary = "Backported and Experimental Type Hints for Python 3.8+"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
     {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
@@ -1719,7 +2004,7 @@ name = "uri-template"
 version = "1.3.0"
 requires_python = ">=3.7"
 summary = "RFC 6570 URI Template Processor"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"},
     {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"},
@@ -1730,7 +2015,7 @@ name = "urllib3"
 version = "2.2.2"
 requires_python = ">=3.8"
 summary = "HTTP library with thread-safe connection pooling, file post, and more."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "urllib3-2.2.2-py3-none-any.whl", hash = "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472"},
     {file = "urllib3-2.2.2.tar.gz", hash = "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"},
@@ -1741,7 +2026,7 @@ name = "watchdog"
 version = "4.0.1"
 requires_python = ">=3.8"
 summary = "Filesystem events monitoring"
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "watchdog-4.0.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:da2dfdaa8006eb6a71051795856bedd97e5b03e57da96f98e375682c48850645"},
     {file = "watchdog-4.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e93f451f2dfa433d97765ca2634628b789b49ba8b504fdde5837cdcf25fdb53b"},
@@ -1776,7 +2061,7 @@ name = "webcolors"
 version = "24.6.0"
 requires_python = ">=3.8"
 summary = "A library for working with the color formats defined by HTML and CSS."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "webcolors-24.6.0-py3-none-any.whl", hash = "sha256:8cf5bc7e28defd1d48b9e83d5fc30741328305a8195c29a8e668fa45586568a1"},
     {file = "webcolors-24.6.0.tar.gz", hash = "sha256:1d160d1de46b3e81e58d0a280d0c78b467dc80f47294b91b1ad8029d2cedb55b"},
@@ -1787,7 +2072,7 @@ name = "wrapt"
 version = "1.16.0"
 requires_python = ">=3.6"
 summary = "Module for decorators, wrappers and monkey patching."
-groups = ["default"]
+groups = ["default", "dev"]
 files = [
     {file = "wrapt-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ffa565331890b90056c01db69c0fe634a776f8019c143a5ae265f9c6bc4bd6d4"},
     {file = "wrapt-1.16.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e4fdb9275308292e880dcbeb12546df7f3e0f96c6b41197e0cf37d2826359020"},
@@ -1828,7 +2113,7 @@ name = "zipp"
 version = "3.19.2"
 requires_python = ">=3.8"
 summary = "Backport of pathlib-compatible object wrapper for zip files"
-groups = ["default"]
+groups = ["default", "dev"]
 marker = "python_version < \"3.12\""
 files = [
     {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
diff --git a/nwb_linkml/pyproject.toml b/nwb_linkml/pyproject.toml
index ed9bd73..72c3664 100644
--- a/nwb_linkml/pyproject.toml
+++ b/nwb_linkml/pyproject.toml
@@ -43,6 +43,11 @@ tests = [
     "pytest-profiling<2.0.0,>=1.7.0",
     "sybil<6.0.0,>=5.0.3",
 ]
+dev = [
+    "nwb-linkml[tests]",
+    "ruff>=0.5.0",
+    "black>=24.4.2",
+]
 
 [tool.pdm]
 distribution = true
diff --git a/pdm.lock b/pdm.lock
index de9ba95..afeb680 100644
--- a/pdm.lock
+++ b/pdm.lock
@@ -5,7 +5,7 @@
 groups = ["default", "dev"]
 strategy = ["cross_platform", "inherit_metadata"]
 lock_version = "4.4.2"
-content_hash = "sha256:f11ad9b7b3e0d83f13c208abbc38ae91609f617a3ceae75b7dd951553900ef24"
+content_hash = "sha256:3113d2345a99f9287c2a8a545bcfeb5d34b99f44377f211dab8652e78d2f551d"
 
 [[package]]
 name = "alabaster"
@@ -146,6 +146,38 @@ files = [
     {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"},
 ]
 
+[[package]]
+name = "black"
+version = "24.4.2"
+requires_python = ">=3.8"
+summary = "The uncompromising code formatter."
+groups = ["dev"]
+dependencies = [
+    "click>=8.0.0",
+    "mypy-extensions>=0.4.3",
+    "packaging>=22.0",
+    "pathspec>=0.9.0",
+    "platformdirs>=2",
+    "tomli>=1.1.0; python_version < \"3.11\"",
+    "typing-extensions>=4.0.1; python_version < \"3.11\"",
+]
+files = [
+    {file = "black-24.4.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:dd1b5a14e417189db4c7b64a6540f31730713d173f0b63e55fabd52d61d8fdce"},
+    {file = "black-24.4.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8e537d281831ad0e71007dcdcbe50a71470b978c453fa41ce77186bbe0ed6021"},
+    {file = "black-24.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:eaea3008c281f1038edb473c1aa8ed8143a5535ff18f978a318f10302b254063"},
+    {file = "black-24.4.2-cp310-cp310-win_amd64.whl", hash = "sha256:7768a0dbf16a39aa5e9a3ded568bb545c8c2727396d063bbaf847df05b08cd96"},
+    {file = "black-24.4.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:257d724c2c9b1660f353b36c802ccece186a30accc7742c176d29c146df6e474"},
+    {file = "black-24.4.2-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:bdde6f877a18f24844e381d45e9947a49e97933573ac9d4345399be37621e26c"},
+    {file = "black-24.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e151054aa00bad1f4e1f04919542885f89f5f7d086b8a59e5000e6c616896ffb"},
+    {file = "black-24.4.2-cp311-cp311-win_amd64.whl", hash = "sha256:7e122b1c4fb252fd85df3ca93578732b4749d9be076593076ef4d07a0233c3e1"},
+    {file = "black-24.4.2-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:accf49e151c8ed2c0cdc528691838afd217c50412534e876a19270fea1e28e2d"},
+    {file = "black-24.4.2-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:88c57dc656038f1ab9f92b3eb5335ee9b021412feaa46330d5eba4e51fe49b04"},
+    {file = "black-24.4.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:be8bef99eb46d5021bf053114442914baeb3649a89dc5f3a555c88737e5e98fc"},
+    {file = "black-24.4.2-cp312-cp312-win_amd64.whl", hash = "sha256:415e686e87dbbe6f4cd5ef0fbf764af7b89f9057b97c908742b6008cc554b9c0"},
+    {file = "black-24.4.2-py3-none-any.whl", hash = "sha256:d36ed1124bb81b32f8614555b34cc4259c3fbc7eec17870e8ff8ded335b58d8c"},
+    {file = "black-24.4.2.tar.gz", hash = "sha256:c872b53057f000085da66a19c55d68f6f8ddcac2642392ad3a355878406fbd4d"},
+]
+
 [[package]]
 name = "blosc2"
 version = "2.7.0"
@@ -1240,6 +1272,17 @@ files = [
     {file = "msgpack-1.0.8.tar.gz", hash = "sha256:95c02b0e27e706e48d0e5426d1710ca78e0f0628d6e89d5b5a5b91a5f12274f3"},
 ]
 
+[[package]]
+name = "mypy-extensions"
+version = "1.0.0"
+requires_python = ">=3.5"
+summary = "Type system extensions for programs checked with the mypy type checker."
+groups = ["dev"]
+files = [
+    {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
+    {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
+]
+
 [[package]]
 name = "myst-nb"
 version = "1.1.1"
@@ -1460,8 +1503,8 @@ dependencies = [
     "myst-nb @ git+https://github.com/executablebooks/MyST-NB.git",
     "myst-parser>=2.0.0",
     "nptyping>=2.5.0",
-    "nwb-linkml",
-    "nwb-schema-language",
+    "nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml",
+    "nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language",
     "sphinx-autobuild>=2021.3.14",
     "sphinx-design>=0.5.0",
     "sphinx-togglebutton>=0.3.2",
@@ -1542,6 +1585,17 @@ files = [
     {file = "partd-1.4.2.tar.gz", hash = "sha256:d022c33afbdc8405c226621b015e8067888173d85f7f5ecebb3cafed9a20f02c"},
 ]
 
+[[package]]
+name = "pathspec"
+version = "0.12.1"
+requires_python = ">=3.8"
+summary = "Utility library for gitignore style pattern matching of file paths."
+groups = ["dev"]
+files = [
+    {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"},
+    {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
+]
+
 [[package]]
 name = "pexpect"
 version = "4.9.0"
@@ -2301,6 +2355,33 @@ files = [
     {file = "ruamel.yaml.clib-0.2.8.tar.gz", hash = "sha256:beb2e0404003de9a4cab9753a8805a8fe9320ee6673136ed7f04255fe60bb512"},
 ]
 
+[[package]]
+name = "ruff"
+version = "0.5.0"
+requires_python = ">=3.7"
+summary = "An extremely fast Python linter and code formatter, written in Rust."
+groups = ["dev"]
+files = [
+    {file = "ruff-0.5.0-py3-none-linux_armv6l.whl", hash = "sha256:ee770ea8ab38918f34e7560a597cc0a8c9a193aaa01bfbd879ef43cb06bd9c4c"},
+    {file = "ruff-0.5.0-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:38f3b8327b3cb43474559d435f5fa65dacf723351c159ed0dc567f7ab735d1b6"},
+    {file = "ruff-0.5.0-py3-none-macosx_11_0_arm64.whl", hash = "sha256:7594f8df5404a5c5c8f64b8311169879f6cf42142da644c7e0ba3c3f14130370"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:adc7012d6ec85032bc4e9065110df205752d64010bed5f958d25dbee9ce35de3"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:d505fb93b0fabef974b168d9b27c3960714d2ecda24b6ffa6a87ac432905ea38"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:9dc5cfd3558f14513ed0d5b70ce531e28ea81a8a3b1b07f0f48421a3d9e7d80a"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_ppc64.manylinux2014_ppc64.whl", hash = "sha256:db3ca35265de239a1176d56a464b51557fce41095c37d6c406e658cf80bbb362"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:b1a321c4f68809fddd9b282fab6a8d8db796b270fff44722589a8b946925a2a8"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:2c4dfcd8d34b143916994b3876b63d53f56724c03f8c1a33a253b7b1e6bf2a7d"},
+    {file = "ruff-0.5.0-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:81e5facfc9f4a674c6a78c64d38becfbd5e4f739c31fcd9ce44c849f1fad9e4c"},
+    {file = "ruff-0.5.0-py3-none-musllinux_1_2_aarch64.whl", hash = "sha256:e589e27971c2a3efff3fadafb16e5aef7ff93250f0134ec4b52052b673cf988d"},
+    {file = "ruff-0.5.0-py3-none-musllinux_1_2_armv7l.whl", hash = "sha256:d2ffbc3715a52b037bcb0f6ff524a9367f642cdc5817944f6af5479bbb2eb50e"},
+    {file = "ruff-0.5.0-py3-none-musllinux_1_2_i686.whl", hash = "sha256:cd096e23c6a4f9c819525a437fa0a99d1c67a1b6bb30948d46f33afbc53596cf"},
+    {file = "ruff-0.5.0-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:46e193b36f2255729ad34a49c9a997d506e58f08555366b2108783b3064a0e1e"},
+    {file = "ruff-0.5.0-py3-none-win32.whl", hash = "sha256:49141d267100f5ceff541b4e06552e98527870eafa1acc9dec9139c9ec5af64c"},
+    {file = "ruff-0.5.0-py3-none-win_amd64.whl", hash = "sha256:e9118f60091047444c1b90952736ee7b1792910cab56e9b9a9ac20af94cd0440"},
+    {file = "ruff-0.5.0-py3-none-win_arm64.whl", hash = "sha256:ed5c4df5c1fb4518abcb57725b576659542bdbe93366f4f329e8f398c4b71178"},
+    {file = "ruff-0.5.0.tar.gz", hash = "sha256:eb641b5873492cf9bd45bc9c5ae5320648218e04386a5f0c264ad6ccce8226a1"},
+]
+
 [[package]]
 name = "setuptools"
 version = "70.2.0"
diff --git a/pyproject.toml b/pyproject.toml
index 8ce0050..287c4f2 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -8,6 +8,8 @@ dev = [
     '-e nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml',
     '-e nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language',
     '-e docs @ file:///${PROJECT_ROOT}/docs',
+    "ruff>=0.5.0",
+    "black>=24.4.2",
 ]
 
 [tool.codespell]
@@ -15,4 +17,74 @@ dev = [
 skip = '.git*,*.lock,*.css,./nwb_linkml/src/nwb_linkml/models,./nwb_linkml/src/nwb_linkml/schema'
 check-hidden = true
 # ignore-regex = ''
-# ignore-words-list = ''
\ No newline at end of file
+# ignore-words-list = ''
+
+[tool.ruff]
+target-version = "py311"
+include = ["nwb_linkml/**/*.py", "nwb_schema_language/src/**/*.py", "pyproject.toml"]
+exclude = [
+    "docs",
+    "nwb_schema_language/src/nwb_schema_language/datamodel/nwb_schema_language.py",
+    "nwb_schema_language/src/nwb_schema_language/datamodel/nwb_schema_pydantic.py",
+    "nwb_linkml/src/nwb_linkml/models/**/*.py"
+]
+line-length = 100
+
+[tool.ruff.lint]
+select = [
+    # pycodestyle
+    "E",
+    # Pyflakes
+    "F",
+    # pyupgrade
+    "UP",
+    # flake8-bugbear
+    "B",
+    # flake8-simplify
+    "SIM",
+    # isort
+    "I",
+    # annotations
+    "ANN",
+    ## ----------
+    # pydocstyle
+    # undocumented public objects
+    "D100", "D101", "D102", "D103", "D104", "D106", "D107",
+    # indentation
+    "D207", "D208",
+    # whitespace
+    "D210", "D211",
+    # emptiness
+    "D419",
+]
+ignore = [
+    "ANN101", "ANN102", "ANN401", "ANN204",
+    # explicit strict arg for zip
+    "B905",
+    # builtin type annotations
+    "UP006", "UP035",
+    # | for Union types (only supported >=3.10
+    "UP007", "UP038",
+    # docstrings for __init__
+    "D107",
+]
+
+fixable = ["ALL"]
+
+[tool.mypy]
+plugins = [
+    "pydantic.mypy"
+]
+packages = [
+    "miniscope_io"
+]
+exclude = [
+    '.*vendor.*'
+]
+follow_imports = "silent"
+warn_unreachable = true
+
+[tool.black]
+target-version = ['py38', 'py39', 'py310', 'py311']
+include = "nwb_linkml/.*\\.py$|nwb_schema_language/.*\\.py$"
+line-length = 100
\ No newline at end of file