mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-09-19 15:34:28 +00:00
update to pydantic 2
This commit is contained in:
parent
3568037a1e
commit
4ee77dbb2e
11 changed files with 303 additions and 114 deletions
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@ -178,7 +178,7 @@ class ClassAdapter(Adapter):
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name_slot = SlotDefinition(
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name_slot = SlotDefinition(
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name='name',
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name='name',
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required=True,
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required=True,
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ifabsent=self.cls.name,
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ifabsent=f'string({self.cls.name})',
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equals_string=self.cls.name,
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equals_string=self.cls.name,
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range='string'
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range='string'
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)
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)
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@ -107,7 +107,7 @@ gen-project: $(PYMODEL)
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$(RUN) gen-project ${GEN_PARGS} -d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)
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$(RUN) gen-project ${GEN_PARGS} -d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)
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gen-pydantic: $(PYMODEL)
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gen-pydantic: $(PYMODEL)
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$(RUN) gen-pydantic $(SOURCE_SCHEMA_PATH) --pydantic_version 1 > $(PYMODEL)/nwb_schema_pydantic.py
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$(RUN) gen-pydantic $(SOURCE_SCHEMA_PATH) --pydantic_version 2 > $(PYMODEL)/nwb_schema_pydantic.py
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$(RUN) run_patches --phase post_generation_pydantic
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$(RUN) run_patches --phase post_generation_pydantic
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test: test-schema test-python test-examples
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test: test-schema test-python test-examples
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180
nwb_schema_language/poetry.lock
generated
180
nwb_schema_language/poetry.lock
generated
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@ -1,5 +1,16 @@
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# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
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# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
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[[package]]
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name = "annotated-types"
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version = "0.5.0"
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description = "Reusable constraint types to use with typing.Annotated"
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optional = false
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python-versions = ">=3.7"
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files = [
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{file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"},
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{file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"},
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]
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[[package]]
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[[package]]
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name = "antlr4-python3-runtime"
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name = "antlr4-python3-runtime"
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version = "4.9.3"
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version = "4.9.3"
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@ -1351,55 +1362,140 @@ pyasn1 = ">=0.4.6,<0.6.0"
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[[package]]
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[[package]]
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name = "pydantic"
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name = "pydantic"
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version = "1.10.12"
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version = "2.3.0"
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description = "Data validation and settings management using python type hints"
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description = "Data validation using Python type hints"
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optional = false
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optional = false
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python-versions = ">=3.7"
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python-versions = ">=3.7"
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files = [
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]
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]
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[package.dependencies]
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[package.dependencies]
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typing-extensions = ">=4.2.0"
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annotated-types = ">=0.4.0"
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pydantic-core = "2.6.3"
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typing-extensions = ">=4.6.1"
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[package.extras]
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[package.extras]
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dotenv = ["python-dotenv (>=0.10.4)"]
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email = ["email-validator (>=2.0.0)"]
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email = ["email-validator (>=1.0.3)"]
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[[package]]
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name = "pydantic-core"
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version = "2.6.3"
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description = ""
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optional = false
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python-versions = ">=3.7"
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]
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||||||
|
|
||||||
|
[package.dependencies]
|
||||||
|
typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0"
|
||||||
|
|
||||||
[[package]]
|
[[package]]
|
||||||
name = "pygments"
|
name = "pygments"
|
||||||
|
|
@ -2427,4 +2523,4 @@ docs = []
|
||||||
[metadata]
|
[metadata]
|
||||||
lock-version = "2.0"
|
lock-version = "2.0"
|
||||||
python-versions = "^3.9"
|
python-versions = "^3.9"
|
||||||
content-hash = "7f1c4bbcfac50aaa741976f74d8ceac46ba630ea5ed649b90184f9698c05d536"
|
content-hash = "64b3d27885bd38afe892c662d06a69f48e980d5464922329aad071e2893f40d9"
|
||||||
|
|
|
||||||
|
|
@ -13,7 +13,7 @@ include = ["README.md", "src/nwb_schema_language/schema", "project"]
|
||||||
[tool.poetry.dependencies]
|
[tool.poetry.dependencies]
|
||||||
python = "^3.9"
|
python = "^3.9"
|
||||||
linkml-runtime = "^1.1.24"
|
linkml-runtime = "^1.1.24"
|
||||||
pydantic = "<2"
|
pydantic = "^2.3.0"
|
||||||
|
|
||||||
[tool.poetry-dynamic-versioning]
|
[tool.poetry-dynamic-versioning]
|
||||||
enable = true
|
enable = true
|
||||||
|
|
|
||||||
|
|
@ -1,6 +1,7 @@
|
||||||
import warnings
|
import warnings
|
||||||
from typing import List, Union
|
from typing import List, Union
|
||||||
try:
|
try:
|
||||||
|
pass
|
||||||
from .datamodel.nwb_schema_pydantic import Namespace, \
|
from .datamodel.nwb_schema_pydantic import Namespace, \
|
||||||
Namespaces, \
|
Namespaces, \
|
||||||
Schema, \
|
Schema, \
|
||||||
|
|
@ -13,5 +14,5 @@ try:
|
||||||
FlatDtype
|
FlatDtype
|
||||||
|
|
||||||
DTypeType = Union[List[CompoundDtype], FlatDtype, ReferenceDtype]
|
DTypeType = Union[List[CompoundDtype], FlatDtype, ReferenceDtype]
|
||||||
except NameError:
|
except (NameError, RecursionError):
|
||||||
warnings.warn('Error importing pydantic classes, passing because we might be in the process of patching them, but it is likely they are broken and you will be unable to use them!')
|
warnings.warn('Error importing pydantic classes, passing because we might be in the process of patching them, but it is likely they are broken and you will be unable to use them!')
|
||||||
|
|
@ -1,3 +1,3 @@
|
||||||
from .nwb_schema_language import *
|
# from .nwb_schema_language import *
|
||||||
|
|
||||||
# create additional derived
|
# create additional derived
|
||||||
|
|
@ -13,13 +13,9 @@ else:
|
||||||
metamodel_version = "None"
|
metamodel_version = "None"
|
||||||
version = "None"
|
version = "None"
|
||||||
|
|
||||||
class WeakRefShimBaseModel(BaseModel):
|
class ConfiguredBaseModel(BaseModel,
|
||||||
__slots__ = '__weakref__'
|
|
||||||
|
|
||||||
class ConfiguredBaseModel(WeakRefShimBaseModel,
|
|
||||||
validate_assignment = True,
|
validate_assignment = True,
|
||||||
validate_all = True,
|
validate_default = True,
|
||||||
underscore_attrs_are_private = True,
|
|
||||||
extra = 'forbid',
|
extra = 'forbid',
|
||||||
arbitrary_types_allowed = True,
|
arbitrary_types_allowed = True,
|
||||||
use_enum_values = True):
|
use_enum_values = True):
|
||||||
|
|
@ -115,7 +111,7 @@ class Namespace(ConfiguredBaseModel):
|
||||||
name: str = Field(...)
|
name: str = Field(...)
|
||||||
full_name: Optional[str] = Field(None, description="""Optional string with extended full name for the namespace.""")
|
full_name: Optional[str] = Field(None, description="""Optional string with extended full name for the namespace.""")
|
||||||
version: str = Field(...)
|
version: str = Field(...)
|
||||||
date: Optional[date] = Field(None, description="""Date that a namespace was last modified or released""")
|
date: Optional[datetime ] = Field(None, description="""Date that a namespace was last modified or released""")
|
||||||
author: List[str] = Field(default_factory=list, description="""List of strings with the names of the authors of the namespace.""")
|
author: List[str] = Field(default_factory=list, description="""List of strings with the names of the authors of the namespace.""")
|
||||||
contact: List[str] = Field(default_factory=list, description="""List of strings with the contact information for the authors. Ordering of the contacts should match the ordering of the authors.""")
|
contact: List[str] = Field(default_factory=list, description="""List of strings with the contact information for the authors. Ordering of the contacts should match the ordering of the authors.""")
|
||||||
schema_: Optional[List[Schema]] = Field(alias="schema", default_factory=list, description="""List of the schema to be included in this namespace.""")
|
schema_: Optional[List[Schema]] = Field(alias="schema", default_factory=list, description="""List of the schema to be included in this namespace.""")
|
||||||
|
|
@ -216,18 +212,18 @@ class Dataset(DtypeMixin):
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# Update forward refs
|
# Model rebuild
|
||||||
# see https://pydantic-docs.helpmanual.io/usage/postponed_annotations/
|
# see https://pydantic-docs.helpmanual.io/usage/models/#rebuilding-a-model
|
||||||
Namespace.update_forward_refs()
|
Namespace.model_rebuild()
|
||||||
Namespaces.update_forward_refs()
|
Namespaces.model_rebuild()
|
||||||
Schema.update_forward_refs()
|
Schema.model_rebuild()
|
||||||
Group.update_forward_refs()
|
Group.model_rebuild()
|
||||||
Groups.update_forward_refs()
|
Groups.model_rebuild()
|
||||||
Link.update_forward_refs()
|
Link.model_rebuild()
|
||||||
Datasets.update_forward_refs()
|
Datasets.model_rebuild()
|
||||||
ReferenceDtype.update_forward_refs()
|
ReferenceDtype.model_rebuild()
|
||||||
CompoundDtype.update_forward_refs()
|
CompoundDtype.model_rebuild()
|
||||||
DtypeMixin.update_forward_refs()
|
DtypeMixin.model_rebuild()
|
||||||
Attribute.update_forward_refs()
|
Attribute.model_rebuild()
|
||||||
Dataset.update_forward_refs()
|
Dataset.model_rebuild()
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -179,7 +179,7 @@ slots:
|
||||||
required: true
|
required: true
|
||||||
pattern: "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$"
|
pattern: "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$"
|
||||||
date:
|
date:
|
||||||
range: date
|
range: datetime
|
||||||
slot_uri: schema:dateModified
|
slot_uri: schema:dateModified
|
||||||
description: Date that a namespace was last modified or released
|
description: Date that a namespace was last modified or released
|
||||||
examples:
|
examples:
|
||||||
|
|
|
||||||
180
poetry.lock
generated
180
poetry.lock
generated
|
|
@ -1,5 +1,16 @@
|
||||||
# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
|
# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "annotated-types"
|
||||||
|
version = "0.5.0"
|
||||||
|
description = "Reusable constraint types to use with typing.Annotated"
|
||||||
|
optional = false
|
||||||
|
python-versions = ">=3.7"
|
||||||
|
files = [
|
||||||
|
{file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"},
|
||||||
|
{file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"},
|
||||||
|
]
|
||||||
|
|
||||||
[[package]]
|
[[package]]
|
||||||
name = "ansi2html"
|
name = "ansi2html"
|
||||||
version = "1.8.0"
|
version = "1.8.0"
|
||||||
|
|
@ -1089,55 +1100,140 @@ refresh = ["bioregistry[refresh] (>=0.8.0,<0.9.0)", "rdflib[refresh] (>=6.2.0,<7
|
||||||
|
|
||||||
[[package]]
|
[[package]]
|
||||||
name = "pydantic"
|
name = "pydantic"
|
||||||
version = "1.10.12"
|
version = "2.3.0"
|
||||||
description = "Data validation and settings management using python type hints"
|
description = "Data validation using Python type hints"
|
||||||
optional = false
|
optional = false
|
||||||
python-versions = ">=3.7"
|
python-versions = ">=3.7"
|
||||||
files = [
|
files = [
|
||||||
{file = "pydantic-1.10.12-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a1fcb59f2f355ec350073af41d927bf83a63b50e640f4dbaa01053a28b7a7718"},
|
{file = "pydantic-2.3.0-py3-none-any.whl", hash = "sha256:45b5e446c6dfaad9444819a293b921a40e1db1aa61ea08aede0522529ce90e81"},
|
||||||
{file = "pydantic-1.10.12-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:b7ccf02d7eb340b216ec33e53a3a629856afe1c6e0ef91d84a4e6f2fb2ca70fe"},
|
{file = "pydantic-2.3.0.tar.gz", hash = "sha256:1607cc106602284cd4a00882986570472f193fde9cb1259bceeaedb26aa79a6d"},
|
||||||
{file = "pydantic-1.10.12-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8fb2aa3ab3728d950bcc885a2e9eff6c8fc40bc0b7bb434e555c215491bcf48b"},
|
|
||||||
{file = "pydantic-1.10.12-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:771735dc43cf8383959dc9b90aa281f0b6092321ca98677c5fb6125a6f56d58d"},
|
|
||||||
{file = "pydantic-1.10.12-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:ca48477862372ac3770969b9d75f1bf66131d386dba79506c46d75e6b48c1e09"},
|
|
||||||
{file = "pydantic-1.10.12-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:a5e7add47a5b5a40c49b3036d464e3c7802f8ae0d1e66035ea16aa5b7a3923ed"},
|
|
||||||
{file = "pydantic-1.10.12-cp310-cp310-win_amd64.whl", hash = "sha256:e4129b528c6baa99a429f97ce733fff478ec955513630e61b49804b6cf9b224a"},
|
|
||||||
{file = "pydantic-1.10.12-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:b0d191db0f92dfcb1dec210ca244fdae5cbe918c6050b342d619c09d31eea0cc"},
|
|
||||||
{file = "pydantic-1.10.12-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:795e34e6cc065f8f498c89b894a3c6da294a936ee71e644e4bd44de048af1405"},
|
|
||||||
{file = "pydantic-1.10.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:69328e15cfda2c392da4e713443c7dbffa1505bc9d566e71e55abe14c97ddc62"},
|
|
||||||
{file = "pydantic-1.10.12-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:2031de0967c279df0d8a1c72b4ffc411ecd06bac607a212892757db7462fc494"},
|
|
||||||
{file = "pydantic-1.10.12-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:ba5b2e6fe6ca2b7e013398bc7d7b170e21cce322d266ffcd57cca313e54fb246"},
|
|
||||||
{file = "pydantic-1.10.12-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:2a7bac939fa326db1ab741c9d7f44c565a1d1e80908b3797f7f81a4f86bc8d33"},
|
|
||||||
{file = "pydantic-1.10.12-cp311-cp311-win_amd64.whl", hash = "sha256:87afda5539d5140cb8ba9e8b8c8865cb5b1463924d38490d73d3ccfd80896b3f"},
|
|
||||||
{file = "pydantic-1.10.12-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:549a8e3d81df0a85226963611950b12d2d334f214436a19537b2efed61b7639a"},
|
|
||||||
{file = "pydantic-1.10.12-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:598da88dfa127b666852bef6d0d796573a8cf5009ffd62104094a4fe39599565"},
|
|
||||||
{file = "pydantic-1.10.12-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ba5c4a8552bff16c61882db58544116d021d0b31ee7c66958d14cf386a5b5350"},
|
|
||||||
{file = "pydantic-1.10.12-cp37-cp37m-musllinux_1_1_i686.whl", hash = "sha256:c79e6a11a07da7374f46970410b41d5e266f7f38f6a17a9c4823db80dadf4303"},
|
|
||||||
{file = "pydantic-1.10.12-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:ab26038b8375581dc832a63c948f261ae0aa21f1d34c1293469f135fa92972a5"},
|
|
||||||
{file = "pydantic-1.10.12-cp37-cp37m-win_amd64.whl", hash = "sha256:e0a16d274b588767602b7646fa05af2782576a6cf1022f4ba74cbb4db66f6ca8"},
|
|
||||||
{file = "pydantic-1.10.12-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:6a9dfa722316f4acf4460afdf5d41d5246a80e249c7ff475c43a3a1e9d75cf62"},
|
|
||||||
{file = "pydantic-1.10.12-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:a73f489aebd0c2121ed974054cb2759af8a9f747de120acd2c3394cf84176ccb"},
|
|
||||||
{file = "pydantic-1.10.12-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6b30bcb8cbfccfcf02acb8f1a261143fab622831d9c0989707e0e659f77a18e0"},
|
|
||||||
{file = "pydantic-1.10.12-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:2fcfb5296d7877af406ba1547dfde9943b1256d8928732267e2653c26938cd9c"},
|
|
||||||
{file = "pydantic-1.10.12-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:2f9a6fab5f82ada41d56b0602606a5506aab165ca54e52bc4545028382ef1c5d"},
|
|
||||||
{file = "pydantic-1.10.12-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:dea7adcc33d5d105896401a1f37d56b47d443a2b2605ff8a969a0ed5543f7e33"},
|
|
||||||
{file = "pydantic-1.10.12-cp38-cp38-win_amd64.whl", hash = "sha256:1eb2085c13bce1612da8537b2d90f549c8cbb05c67e8f22854e201bde5d98a47"},
|
|
||||||
{file = "pydantic-1.10.12-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:ef6c96b2baa2100ec91a4b428f80d8f28a3c9e53568219b6c298c1125572ebc6"},
|
|
||||||
{file = "pydantic-1.10.12-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:6c076be61cd0177a8433c0adcb03475baf4ee91edf5a4e550161ad57fc90f523"},
|
|
||||||
{file = "pydantic-1.10.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2d5a58feb9a39f481eda4d5ca220aa8b9d4f21a41274760b9bc66bfd72595b86"},
|
|
||||||
{file = "pydantic-1.10.12-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e5f805d2d5d0a41633651a73fa4ecdd0b3d7a49de4ec3fadf062fe16501ddbf1"},
|
|
||||||
{file = "pydantic-1.10.12-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:1289c180abd4bd4555bb927c42ee42abc3aee02b0fb2d1223fb7c6e5bef87dbe"},
|
|
||||||
{file = "pydantic-1.10.12-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:5d1197e462e0364906cbc19681605cb7c036f2475c899b6f296104ad42b9f5fb"},
|
|
||||||
{file = "pydantic-1.10.12-cp39-cp39-win_amd64.whl", hash = "sha256:fdbdd1d630195689f325c9ef1a12900524dceb503b00a987663ff4f58669b93d"},
|
|
||||||
{file = "pydantic-1.10.12-py3-none-any.whl", hash = "sha256:b749a43aa51e32839c9d71dc67eb1e4221bb04af1033a32e3923d46f9effa942"},
|
|
||||||
{file = "pydantic-1.10.12.tar.gz", hash = "sha256:0fe8a415cea8f340e7a9af9c54fc71a649b43e8ca3cc732986116b3cb135d303"},
|
|
||||||
]
|
]
|
||||||
|
|
||||||
[package.dependencies]
|
[package.dependencies]
|
||||||
typing-extensions = ">=4.2.0"
|
annotated-types = ">=0.4.0"
|
||||||
|
pydantic-core = "2.6.3"
|
||||||
|
typing-extensions = ">=4.6.1"
|
||||||
|
|
||||||
[package.extras]
|
[package.extras]
|
||||||
dotenv = ["python-dotenv (>=0.10.4)"]
|
email = ["email-validator (>=2.0.0)"]
|
||||||
email = ["email-validator (>=1.0.3)"]
|
|
||||||
|
[[package]]
|
||||||
|
name = "pydantic-core"
|
||||||
|
version = "2.6.3"
|
||||||
|
description = ""
|
||||||
|
optional = false
|
||||||
|
python-versions = ">=3.7"
|
||||||
|
files = [
|
||||||
|
{file = "pydantic_core-2.6.3-cp310-cp310-macosx_10_7_x86_64.whl", hash = "sha256:1a0ddaa723c48af27d19f27f1c73bdc615c73686d763388c8683fe34ae777bad"},
|
||||||
|
{file = "pydantic_core-2.6.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:5cfde4fab34dd1e3a3f7f3db38182ab6c95e4ea91cf322242ee0be5c2f7e3d2f"},
|
||||||
|
{file = "pydantic_core-2.6.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5493a7027bfc6b108e17c3383959485087d5942e87eb62bbac69829eae9bc1f7"},
|
||||||
|
{file = "pydantic_core-2.6.3-cp310-cp310-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:84e87c16f582f5c753b7f39a71bd6647255512191be2d2dbf49458c4ef024588"},
|
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{file = "pydantic_core-2.6.3-pp37-pypy37_pp73-musllinux_1_1_aarch64.whl", hash = "sha256:c8c6660089a25d45333cb9db56bb9e347241a6d7509838dbbd1931d0e19dbc7f"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp37-pypy37_pp73-musllinux_1_1_x86_64.whl", hash = "sha256:692b4ff5c4e828a38716cfa92667661a39886e71136c97b7dac26edef18767f7"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp37-pypy37_pp73-win_amd64.whl", hash = "sha256:f1a5d8f18877474c80b7711d870db0eeef9442691fcdb00adabfc97e183ee0b0"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-macosx_10_7_x86_64.whl", hash = "sha256:3796a6152c545339d3b1652183e786df648ecdf7c4f9347e1d30e6750907f5bb"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-macosx_11_0_arm64.whl", hash = "sha256:b962700962f6e7a6bd77e5f37320cabac24b4c0f76afeac05e9f93cf0c620014"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:56ea80269077003eaa59723bac1d8bacd2cd15ae30456f2890811efc1e3d4413"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:75c0ebbebae71ed1e385f7dfd9b74c1cff09fed24a6df43d326dd7f12339ec34"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:252851b38bad3bfda47b104ffd077d4f9604a10cb06fe09d020016a25107bf98"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-musllinux_1_1_aarch64.whl", hash = "sha256:6656a0ae383d8cd7cc94e91de4e526407b3726049ce8d7939049cbfa426518c8"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-musllinux_1_1_x86_64.whl", hash = "sha256:d9140ded382a5b04a1c030b593ed9bf3088243a0a8b7fa9f071a5736498c5483"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:d38bbcef58220f9c81e42c255ef0bf99735d8f11edef69ab0b499da77105158a"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-macosx_10_7_x86_64.whl", hash = "sha256:c9d469204abcca28926cbc28ce98f28e50e488767b084fb3fbdf21af11d3de26"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-macosx_11_0_arm64.whl", hash = "sha256:48c1ed8b02ffea4d5c9c220eda27af02b8149fe58526359b3c07eb391cb353a2"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8b2b1bfed698fa410ab81982f681f5b1996d3d994ae8073286515ac4d165c2e7"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bf9d42a71a4d7a7c1f14f629e5c30eac451a6fc81827d2beefd57d014c006c4a"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:4292ca56751aebbe63a84bbfc3b5717abb09b14d4b4442cc43fd7c49a1529efd"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-musllinux_1_1_aarch64.whl", hash = "sha256:7dc2ce039c7290b4ef64334ec7e6ca6494de6eecc81e21cb4f73b9b39991408c"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-musllinux_1_1_x86_64.whl", hash = "sha256:615a31b1629e12445c0e9fc8339b41aaa6cc60bd53bf802d5fe3d2c0cda2ae8d"},
|
||||||
|
{file = "pydantic_core-2.6.3-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:1fa1f6312fb84e8c281f32b39affe81984ccd484da6e9d65b3d18c202c666149"},
|
||||||
|
{file = "pydantic_core-2.6.3.tar.gz", hash = "sha256:1508f37ba9e3ddc0189e6ff4e2228bd2d3c3a4641cbe8c07177162f76ed696c7"},
|
||||||
|
]
|
||||||
|
|
||||||
|
[package.dependencies]
|
||||||
|
typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0"
|
||||||
|
|
||||||
[[package]]
|
[[package]]
|
||||||
name = "pygments"
|
name = "pygments"
|
||||||
|
|
@ -2062,4 +2158,4 @@ tests = ["pytest", "pytest-depends"]
|
||||||
[metadata]
|
[metadata]
|
||||||
lock-version = "2.0"
|
lock-version = "2.0"
|
||||||
python-versions = "^3.11"
|
python-versions = "^3.11"
|
||||||
content-hash = "d76271be11498c9055d0692800a4e1ddcb81d9807e6ff993472ea2ab7eb076b0"
|
content-hash = "b552d70308f5b757a624b3d0046e54af4297bfba994a8019f4b366cce2fbe06f"
|
||||||
|
|
|
||||||
|
|
@ -15,7 +15,6 @@ python = "^3.11"
|
||||||
pyyaml = "^6.0"
|
pyyaml = "^6.0"
|
||||||
linkml-runtime = "^1.5.6"
|
linkml-runtime = "^1.5.6"
|
||||||
#nwb_schema_language = { path = './nwb_schema_language', develop = true, optional = true }
|
#nwb_schema_language = { path = './nwb_schema_language', develop = true, optional = true }
|
||||||
pydantic = "<2"
|
|
||||||
rich = "^13.5.2"
|
rich = "^13.5.2"
|
||||||
linkml = "^1.5.7"
|
linkml = "^1.5.7"
|
||||||
pytest = { version="^7.4.0", optional=true}
|
pytest = { version="^7.4.0", optional=true}
|
||||||
|
|
@ -23,6 +22,7 @@ pytest-depends = {version="^1.0.1", optional=true}
|
||||||
dash = {version="^2.12.1", optional=true}
|
dash = {version="^2.12.1", optional=true}
|
||||||
dash-cytoscape = {version="^0.3.0", optional=true}
|
dash-cytoscape = {version="^0.3.0", optional=true}
|
||||||
nptyping = "^2.5.0"
|
nptyping = "^2.5.0"
|
||||||
|
pydantic = "^2.3.0"
|
||||||
|
|
||||||
[tool.poetry.extras]
|
[tool.poetry.extras]
|
||||||
dev = ["nwb_schema_language"]
|
dev = ["nwb_schema_language"]
|
||||||
|
|
|
||||||
|
|
@ -40,7 +40,7 @@ def test_generate_pydantic(tmp_output_dir):
|
||||||
|
|
||||||
generator = NWBPydanticGenerator(
|
generator = NWBPydanticGenerator(
|
||||||
str(schema),
|
str(schema),
|
||||||
pydantic_version='1',
|
pydantic_version='2',
|
||||||
emit_metadata=True,
|
emit_metadata=True,
|
||||||
gen_classvars=True,
|
gen_classvars=True,
|
||||||
gen_slots=True
|
gen_slots=True
|
||||||
|
|
|
||||||
Loading…
Reference in a new issue