update tests

nwb_linkml/src/nwb_linkml/adapters/dataset.py

@@ -154,10 +154,14 @@ class MapScalarAttributes(DatasetMap):
                       name: rate
                       description: Sampling rate, in Hz.
                       range: float32
+                      required: true
                     unit:
                       name: unit
                       description: Unit of measurement for time, which is fixed to 'seconds'.
+                      ifabsent: string(seconds)
                       range: text
+                      required: true
+                      equals_string: seconds
                     value:
                       name: value
                       range: float64
@@ -244,11 +248,15 @@ class MapListlike(DatasetMap):
                       range: string
                       required: true
                     value:
-                      name: image
+                      name: value
+                      annotations:
+                        source_type:
+                          tag: source_type
+                          value: reference
                       description: Ordered dataset of references to Image objects.
-                      multivalued: true
                       range: Image
                       required: true
+                      multivalued: true
                   tree_root: true
 
     """
@@ -476,12 +484,14 @@ class MapArrayLikeAttributes(DatasetMap):
                       name: resolution
                       description: Pixel resolution of the image, in pixels per centimeter.
                       range: float32
+                      required: false
                     description:
                       name: description
                       description: Description of the image.
                       range: text
-                    array:
-                      name: array
+                      required: false
+                    value:
+                      name: value
                       range: numeric
                       any_of:
                       - array:

nwb_linkml/tests/test_adapters/test_adapter_classes.py

@@ -3,6 +3,7 @@ from linkml_runtime.linkml_model import SlotDefinition
 
 from nwb_linkml.adapters import DatasetAdapter, GroupAdapter
 from nwb_schema_language import CompoundDtype, Dataset, Group, ReferenceDtype
+from nwb_linkml.maps.dtype import handle_dtype
 
 
 @pytest.mark.xfail()
@@ -89,7 +90,7 @@ def test_get_full_name():
     parent.cls.neurodata_type_def = None
     parent.cls.name = "ParentName"
     parent.parent = grandparent
-    assert adapter._get_full_name() == "Grandparent__ParentName__ChildName"
+    assert adapter._get_full_name() == "ParentName__ChildName"
 
     # if it has none, raise value error
     adapter.cls.name = None
@@ -179,9 +180,9 @@ def test_handle_dtype(nwb_schema):
         CompoundDtype(name="reference", doc="reference!", dtype=reftype),
     ]
 
-    assert cls.handle_dtype(reftype) == "TargetClass"
-    assert cls.handle_dtype(None) == "AnyType"
-    assert cls.handle_dtype([]) == "AnyType"
+    assert handle_dtype(reftype) == "TargetClass"
+    assert handle_dtype(None) == "AnyType"
+    assert handle_dtype([]) == "AnyType"
     # handling compound types is currently TODO
-    assert cls.handle_dtype(compoundtype) == "AnyType"
-    assert cls.handle_dtype("int32") == "int32"
+    assert handle_dtype(compoundtype) == "AnyType"
+    assert handle_dtype("int32") == "int32"