mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-11-12 17:54:29 +00:00
regenerate models with sorted imports
This commit is contained in:
parent
fac18ab147
commit
81b475a2d4
192 changed files with 3417 additions and 2668 deletions
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from .pydantic.core.v2_7_0.namespace import *
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
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import numpy as np
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from numpydantic import NDArray, Shape
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from ...hdmf_common.v1_1_0.hdmf_common_table import Data, Container, DynamicTable
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from ...hdmf_common.v1_1_0.hdmf_common_table import Container, Data, DynamicTable
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metamodel_version = "None"
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version = "2.2.0"
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@ -1,20 +1,24 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
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import numpy as np
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from numpydantic import NDArray, Shape
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from ...core.v2_2_0.core_nwb_misc import IntervalSeries
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from ...core.v2_2_0.core_nwb_base import (
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NWBDataInterface,
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TimeSeries,
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TimeSeriesStartingTime,
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TimeSeriesSync,
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NWBDataInterface,
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)
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from ...core.v2_2_0.core_nwb_misc import IntervalSeries
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metamodel_version = "None"
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version = "2.2.0"
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@ -1,14 +1,18 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
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import numpy as np
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from ...core.v2_2_0.core_nwb_base import NWBContainer
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metamodel_version = "None"
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version = "2.2.0"
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@ -1,30 +1,34 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
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import numpy as np
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTableRegion
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
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from numpydantic import NDArray, Shape
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from pydantic import (
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BaseModel,
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BeforeValidator,
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ConfigDict,
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Field,
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RootModel,
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field_validator,
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ValidationInfo,
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BeforeValidator,
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field_validator,
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)
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from ...core.v2_2_0.core_nwb_device import Device
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from ...core.v2_2_0.core_nwb_base import (
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NWBContainer,
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NWBDataInterface,
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TimeSeries,
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TimeSeriesStartingTime,
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TimeSeriesSync,
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NWBDataInterface,
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NWBContainer,
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)
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from numpydantic import NDArray, Shape
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from ...core.v2_2_0.core_nwb_device import Device
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTableRegion
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metamodel_version = "None"
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version = "2.2.0"
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
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import numpy as np
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
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from numpydantic import NDArray, Shape
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from pydantic import (
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BaseModel,
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BeforeValidator,
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ConfigDict,
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Field,
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RootModel,
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field_validator,
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ValidationInfo,
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BeforeValidator,
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field_validator,
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)
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTable, VectorIndex, VectorData
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from ...core.v2_2_0.core_nwb_base import TimeSeries
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from numpydantic import NDArray, Shape
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
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metamodel_version = "None"
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version = "2.2.0"
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@ -1,27 +1,31 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
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import numpy as np
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from ...core.v2_2_0.core_nwb_misc import Units
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from ...core.v2_2_0.core_nwb_device import Device
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from ...core.v2_2_0.core_nwb_ogen import OptogeneticStimulusSite
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from ...core.v2_2_0.core_nwb_ophys import ImagingPlane
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from numpydantic import NDArray, Shape
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from ...core.v2_2_0.core_nwb_base import (
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NWBContainer,
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NWBDataInterface,
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ProcessingModule,
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TimeSeries,
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)
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from ...core.v2_2_0.core_nwb_device import Device
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from ...core.v2_2_0.core_nwb_ecephys import ElectrodeGroup
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from numpydantic import NDArray, Shape
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
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from ...core.v2_2_0.core_nwb_icephys import IntracellularElectrode, SweepTable
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from ...core.v2_2_0.core_nwb_epoch import TimeIntervals
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from ...core.v2_2_0.core_nwb_icephys import IntracellularElectrode, SweepTable
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from ...core.v2_2_0.core_nwb_misc import Units
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from ...core.v2_2_0.core_nwb_ogen import OptogeneticStimulusSite
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from ...core.v2_2_0.core_nwb_ophys import ImagingPlane
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
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metamodel_version = "None"
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version = "2.2.0"
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@ -1,29 +1,33 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
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import numpy as np
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from ...core.v2_2_0.core_nwb_base import (
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TimeSeries,
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TimeSeriesStartingTime,
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TimeSeriesSync,
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NWBContainer,
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)
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from ...core.v2_2_0.core_nwb_device import Device
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
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from numpydantic import NDArray, Shape
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from pydantic import (
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BaseModel,
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BeforeValidator,
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ConfigDict,
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Field,
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RootModel,
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field_validator,
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ValidationInfo,
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BeforeValidator,
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field_validator,
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)
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from numpydantic import NDArray, Shape
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTable, VectorIndex, VectorData
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from ...core.v2_2_0.core_nwb_base import (
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NWBContainer,
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TimeSeries,
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TimeSeriesStartingTime,
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TimeSeriesSync,
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)
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from ...core.v2_2_0.core_nwb_device import Device
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
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metamodel_version = "None"
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version = "2.2.0"
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@ -1,15 +1,19 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
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import numpy as np
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from numpydantic import NDArray, Shape
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from ...core.v2_2_0.core_nwb_base import Image, TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
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metamodel_version = "None"
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version = "2.2.0"
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|
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@ -1,30 +1,34 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
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import numpy as np
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from ...core.v2_2_0.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
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from numpydantic import NDArray, Shape
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from pydantic import (
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BaseModel,
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BeforeValidator,
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ConfigDict,
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Field,
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RootModel,
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field_validator,
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ValidationInfo,
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BeforeValidator,
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field_validator,
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)
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from ...core.v2_2_0.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
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from ...core.v2_2_0.core_nwb_ecephys import ElectrodeGroup
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from numpydantic import NDArray, Shape
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from ...hdmf_common.v1_1_0.hdmf_common_table import (
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DynamicTable,
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DynamicTableRegion,
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VectorData,
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VectorIndex,
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DynamicTableRegion,
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)
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metamodel_version = "None"
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version = "2.2.0"
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@ -178,7 +182,7 @@ class AbstractFeatureSeriesData(ConfiguredBaseModel):
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json_schema_extra={"linkml_meta": {"equals_string": "data", "ifabsent": "string(data)"}},
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)
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unit: Optional[str] = Field(
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"see 'feature_units'",
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"see ",
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description="""Since there can be different units for different features, store the units in 'feature_units'. The default value for this attribute is \"see 'feature_units'\".""",
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json_schema_extra={"linkml_meta": {"ifabsent": "string(see 'feature_units')"}},
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)
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|
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@ -1,21 +1,25 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
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import numpy as np
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from numpydantic import NDArray, Shape
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from ...core.v2_2_0.core_nwb_base import (
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NWBContainer,
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TimeSeries,
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TimeSeriesStartingTime,
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TimeSeriesSync,
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NWBContainer,
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)
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from ...core.v2_2_0.core_nwb_device import Device
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metamodel_version = "None"
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version = "2.2.0"
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|
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@ -1,31 +1,35 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
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import re
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import sys
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
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import numpy as np
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from ...core.v2_2_0.core_nwb_image import ImageSeries, ImageSeriesExternalFile
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
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from numpydantic import NDArray, Shape
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from pydantic import (
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BaseModel,
|
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BeforeValidator,
|
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ConfigDict,
|
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Field,
|
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RootModel,
|
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field_validator,
|
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ValidationInfo,
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BeforeValidator,
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field_validator,
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)
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTableRegion, DynamicTable
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from ...core.v2_2_0.core_nwb_device import Device
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from numpydantic import NDArray, Shape
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from ...core.v2_2_0.core_nwb_base import (
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NWBContainer,
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NWBDataInterface,
|
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TimeSeries,
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TimeSeriesStartingTime,
|
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TimeSeriesSync,
|
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TimeSeries,
|
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NWBDataInterface,
|
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NWBContainer,
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)
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from ...core.v2_2_0.core_nwb_device import Device
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from ...core.v2_2_0.core_nwb_image import ImageSeries, ImageSeriesExternalFile
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from ...hdmf_common.v1_1_0.hdmf_common_table import DynamicTable, DynamicTableRegion
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metamodel_version = "None"
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version = "2.2.0"
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|
|
|
@ -1,23 +1,27 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
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from enum import Enum
|
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|
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import re
|
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import sys
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
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import numpy as np
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from ...core.v2_2_0.core_nwb_image import GrayscaleImage
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from ...core.v2_2_0.core_nwb_base import NWBData, NWBDataInterface
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
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from numpydantic import NDArray, Shape
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from pydantic import (
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BaseModel,
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BeforeValidator,
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ConfigDict,
|
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Field,
|
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RootModel,
|
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field_validator,
|
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ValidationInfo,
|
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BeforeValidator,
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field_validator,
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)
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from numpydantic import NDArray, Shape
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from ...core.v2_2_0.core_nwb_base import NWBData, NWBDataInterface
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from ...core.v2_2_0.core_nwb_image import GrayscaleImage
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metamodel_version = "None"
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version = "2.2.0"
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|
|
|
@ -1,61 +1,78 @@
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from __future__ import annotations
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from datetime import datetime, date
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from decimal import Decimal
|
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from enum import Enum
|
||||
|
||||
import re
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import sys
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from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from datetime import date, datetime, time
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from decimal import Decimal
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from enum import Enum
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from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
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|
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import numpy as np
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from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
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from ...core.v2_2_0.core_nwb_base import (
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NWBData,
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Image,
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||||
Images,
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NWBContainer,
|
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NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
TimeSeriesData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
ProcessingModule,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_behavior import (
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
CompassDirection,
|
||||
EyeTracking,
|
||||
Position,
|
||||
PupilTracking,
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_device import Device
|
||||
from ...core.v2_2_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_0.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
RGBImage,
|
||||
RGBAImage,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
ImageMaskSeries,
|
||||
OpticalSeries,
|
||||
IndexSeries,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_ecephys import (
|
||||
ElectricalSeries,
|
||||
SpikeEventSeries,
|
||||
FeatureExtraction,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
ClusterWaveforms,
|
||||
Clustering,
|
||||
ElectricalSeries,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FeatureExtraction,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
SpikeEventSeries,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_0.core_nwb_file import (
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralExtracellularEphys,
|
||||
GeneralIntracellularEphys,
|
||||
GeneralSourceScript,
|
||||
NWBFile,
|
||||
NWBFileGeneral,
|
||||
NWBFileIntervals,
|
||||
NWBFileStimulus,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_icephys import (
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
CurrentClampSeries,
|
||||
CurrentClampSeriesData,
|
||||
IZeroClampSeries,
|
||||
CurrentClampStimulusSeries,
|
||||
CurrentClampStimulusSeriesData,
|
||||
IZeroClampSeries,
|
||||
IntracellularElectrode,
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
SweepTable,
|
||||
VoltageClampSeries,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesCapacitanceFast,
|
||||
VoltageClampSeriesCapacitanceSlow,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesResistanceCompBandwidth,
|
||||
VoltageClampSeriesResistanceCompCorrection,
|
||||
VoltageClampSeriesResistanceCompPrediction,
|
||||
|
@ -63,79 +80,66 @@ from ...core.v2_2_0.core_nwb_icephys import (
|
|||
VoltageClampSeriesWholeCellSeriesResistanceComp,
|
||||
VoltageClampStimulusSeries,
|
||||
VoltageClampStimulusSeriesData,
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_0.core_nwb_ophys import (
|
||||
TwoPhotonSeries,
|
||||
RoiResponseSeries,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
ImagingPlaneGridSpacing,
|
||||
OpticalChannel,
|
||||
MotionCorrection,
|
||||
from ...core.v2_2_0.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
ImageMaskSeries,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
IndexSeries,
|
||||
OpticalSeries,
|
||||
RGBAImage,
|
||||
RGBImage,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_misc import (
|
||||
AbstractFeatureSeries,
|
||||
AbstractFeatureSeriesData,
|
||||
AnnotationSeries,
|
||||
IntervalSeries,
|
||||
DecompositionSeries,
|
||||
DecompositionSeriesData,
|
||||
DecompositionSeriesBands,
|
||||
DecompositionSeriesData,
|
||||
IntervalSeries,
|
||||
Units,
|
||||
UnitsSpikeTimes,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_file import (
|
||||
NWBFile,
|
||||
NWBFileStimulus,
|
||||
NWBFileGeneral,
|
||||
GeneralSourceScript,
|
||||
Subject,
|
||||
GeneralExtracellularEphys,
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralIntracellularEphys,
|
||||
NWBFileIntervals,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_behavior import (
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
PupilTracking,
|
||||
EyeTracking,
|
||||
CompassDirection,
|
||||
Position,
|
||||
from ...core.v2_2_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_0.core_nwb_ophys import (
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneGridSpacing,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
MotionCorrection,
|
||||
OpticalChannel,
|
||||
RoiResponseSeries,
|
||||
TwoPhotonSeries,
|
||||
)
|
||||
from ...core.v2_2_0.core_nwb_retinotopy import (
|
||||
RetinotopyMap,
|
||||
AxisMap,
|
||||
RetinotopyImage,
|
||||
ImagingRetinotopy,
|
||||
ImagingRetinotopyFocalDepthImage,
|
||||
)
|
||||
from ...hdmf_common.v1_1_0.hdmf_common_table import (
|
||||
Data,
|
||||
Index,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
ElementIdentifiers,
|
||||
DynamicTableRegion,
|
||||
Container,
|
||||
DynamicTable,
|
||||
RetinotopyImage,
|
||||
RetinotopyMap,
|
||||
)
|
||||
from ...hdmf_common.v1_1_0.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixData,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
CSRMatrixData,
|
||||
)
|
||||
from ...hdmf_common.v1_1_0.hdmf_common_table import (
|
||||
Container,
|
||||
Data,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
ElementIdentifiers,
|
||||
Index,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.0"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import Data, Container, DynamicTable
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import Container, Data, DynamicTable
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,20 +1,24 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_1.core_nwb_misc import IntervalSeries
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_misc import IntervalSeries
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import NWBContainer
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTableRegion
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import TimeSeries
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,27 +1,31 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_1.core_nwb_misc import Units
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from ...core.v2_2_1.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_1.core_nwb_ophys import ImagingPlane
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from ...core.v2_2_1.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
from ...core.v2_2_1.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_1.core_nwb_epoch import TimeIntervals
|
||||
from ...core.v2_2_1.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_1.core_nwb_misc import Units
|
||||
from ...core.v2_2_1.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_1.core_nwb_ophys import ImagingPlane
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,15 +1,19 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import Image, TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_1.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_2_1.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
DynamicTableRegion,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
||||
|
@ -178,7 +182,7 @@ class AbstractFeatureSeriesData(ConfiguredBaseModel):
|
|||
json_schema_extra={"linkml_meta": {"equals_string": "data", "ifabsent": "string(data)"}},
|
||||
)
|
||||
unit: Optional[str] = Field(
|
||||
"see 'feature_units'",
|
||||
"see ",
|
||||
description="""Since there can be different units for different features, store the units in 'feature_units'. The default value for this attribute is \"see 'feature_units'\".""",
|
||||
json_schema_extra={"linkml_meta": {"ifabsent": "string(see 'feature_units')"}},
|
||||
)
|
||||
|
|
|
@ -1,21 +1,25 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
||||
|
|
|
@ -1,31 +1,35 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_1.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTableRegion, DynamicTable
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
TimeSeries,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from ...core.v2_2_1.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import DynamicTable, DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_1.core_nwb_image import GrayscaleImage
|
||||
from ...core.v2_2_1.core_nwb_base import NWBData, NWBDataInterface
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import NWBData, NWBDataInterface
|
||||
from ...core.v2_2_1.core_nwb_image import GrayscaleImage
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,61 +1,78 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_1.core_nwb_base import (
|
||||
NWBData,
|
||||
Image,
|
||||
Images,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
TimeSeriesData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
ProcessingModule,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_behavior import (
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
CompassDirection,
|
||||
EyeTracking,
|
||||
Position,
|
||||
PupilTracking,
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_device import Device
|
||||
from ...core.v2_2_1.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_1.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
RGBImage,
|
||||
RGBAImage,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
ImageMaskSeries,
|
||||
OpticalSeries,
|
||||
IndexSeries,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_ecephys import (
|
||||
ElectricalSeries,
|
||||
SpikeEventSeries,
|
||||
FeatureExtraction,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
ClusterWaveforms,
|
||||
Clustering,
|
||||
ElectricalSeries,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FeatureExtraction,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
SpikeEventSeries,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_1.core_nwb_file import (
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralExtracellularEphys,
|
||||
GeneralIntracellularEphys,
|
||||
GeneralSourceScript,
|
||||
NWBFile,
|
||||
NWBFileGeneral,
|
||||
NWBFileIntervals,
|
||||
NWBFileStimulus,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_icephys import (
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
CurrentClampSeries,
|
||||
CurrentClampSeriesData,
|
||||
IZeroClampSeries,
|
||||
CurrentClampStimulusSeries,
|
||||
CurrentClampStimulusSeriesData,
|
||||
IZeroClampSeries,
|
||||
IntracellularElectrode,
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
SweepTable,
|
||||
VoltageClampSeries,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesCapacitanceFast,
|
||||
VoltageClampSeriesCapacitanceSlow,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesResistanceCompBandwidth,
|
||||
VoltageClampSeriesResistanceCompCorrection,
|
||||
VoltageClampSeriesResistanceCompPrediction,
|
||||
|
@ -63,79 +80,66 @@ from ...core.v2_2_1.core_nwb_icephys import (
|
|||
VoltageClampSeriesWholeCellSeriesResistanceComp,
|
||||
VoltageClampStimulusSeries,
|
||||
VoltageClampStimulusSeriesData,
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_1.core_nwb_ophys import (
|
||||
TwoPhotonSeries,
|
||||
RoiResponseSeries,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
ImagingPlaneGridSpacing,
|
||||
OpticalChannel,
|
||||
MotionCorrection,
|
||||
from ...core.v2_2_1.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
ImageMaskSeries,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
IndexSeries,
|
||||
OpticalSeries,
|
||||
RGBAImage,
|
||||
RGBImage,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_misc import (
|
||||
AbstractFeatureSeries,
|
||||
AbstractFeatureSeriesData,
|
||||
AnnotationSeries,
|
||||
IntervalSeries,
|
||||
DecompositionSeries,
|
||||
DecompositionSeriesData,
|
||||
DecompositionSeriesBands,
|
||||
DecompositionSeriesData,
|
||||
IntervalSeries,
|
||||
Units,
|
||||
UnitsSpikeTimes,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_file import (
|
||||
NWBFile,
|
||||
NWBFileStimulus,
|
||||
NWBFileGeneral,
|
||||
GeneralSourceScript,
|
||||
Subject,
|
||||
GeneralExtracellularEphys,
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralIntracellularEphys,
|
||||
NWBFileIntervals,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_behavior import (
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
PupilTracking,
|
||||
EyeTracking,
|
||||
CompassDirection,
|
||||
Position,
|
||||
from ...core.v2_2_1.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_1.core_nwb_ophys import (
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneGridSpacing,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
MotionCorrection,
|
||||
OpticalChannel,
|
||||
RoiResponseSeries,
|
||||
TwoPhotonSeries,
|
||||
)
|
||||
from ...core.v2_2_1.core_nwb_retinotopy import (
|
||||
RetinotopyMap,
|
||||
AxisMap,
|
||||
RetinotopyImage,
|
||||
ImagingRetinotopy,
|
||||
ImagingRetinotopyFocalDepthImage,
|
||||
)
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import (
|
||||
Data,
|
||||
Index,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
ElementIdentifiers,
|
||||
DynamicTableRegion,
|
||||
Container,
|
||||
DynamicTable,
|
||||
RetinotopyImage,
|
||||
RetinotopyMap,
|
||||
)
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixData,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
CSRMatrixData,
|
||||
)
|
||||
from ...hdmf_common.v1_1_2.hdmf_common_table import (
|
||||
Container,
|
||||
Data,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
ElementIdentifiers,
|
||||
Index,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.1"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import Data, Container, DynamicTable
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import Container, Data, DynamicTable
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,20 +1,24 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_2.core_nwb_misc import IntervalSeries
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_misc import IntervalSeries
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import NWBContainer
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTableRegion
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import TimeSeries
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,27 +1,31 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_2.core_nwb_misc import Units
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from ...core.v2_2_2.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_2.core_nwb_ophys import ImagingPlane
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from ...core.v2_2_2.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
from ...core.v2_2_2.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_2.core_nwb_epoch import TimeIntervals
|
||||
from ...core.v2_2_2.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_2.core_nwb_misc import Units
|
||||
from ...core.v2_2_2.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_2.core_nwb_ophys import ImagingPlane
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,15 +1,19 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import Image, TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_2.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_2_2.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
DynamicTableRegion,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
@ -178,7 +182,7 @@ class AbstractFeatureSeriesData(ConfiguredBaseModel):
|
|||
json_schema_extra={"linkml_meta": {"equals_string": "data", "ifabsent": "string(data)"}},
|
||||
)
|
||||
unit: Optional[str] = Field(
|
||||
"see 'feature_units'",
|
||||
"see ",
|
||||
description="""Since there can be different units for different features, store the units in 'feature_units'. The default value for this attribute is \"see 'feature_units'\".""",
|
||||
json_schema_extra={"linkml_meta": {"ifabsent": "string(see 'feature_units')"}},
|
||||
)
|
||||
|
|
|
@ -1,21 +1,25 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
||||
|
|
|
@ -1,31 +1,35 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_2.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTableRegion, DynamicTable
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
TimeSeries,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from ...core.v2_2_2.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_2.core_nwb_base import NWBDataInterface
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import NWBDataInterface
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
|
|
@ -1,61 +1,78 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_2.core_nwb_base import (
|
||||
NWBData,
|
||||
Image,
|
||||
Images,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
TimeSeriesData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
ProcessingModule,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_behavior import (
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
CompassDirection,
|
||||
EyeTracking,
|
||||
Position,
|
||||
PupilTracking,
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_device import Device
|
||||
from ...core.v2_2_2.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_2.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
RGBImage,
|
||||
RGBAImage,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
ImageMaskSeries,
|
||||
OpticalSeries,
|
||||
IndexSeries,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_ecephys import (
|
||||
ElectricalSeries,
|
||||
SpikeEventSeries,
|
||||
FeatureExtraction,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
ClusterWaveforms,
|
||||
Clustering,
|
||||
ElectricalSeries,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FeatureExtraction,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
SpikeEventSeries,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_2.core_nwb_file import (
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralExtracellularEphys,
|
||||
GeneralIntracellularEphys,
|
||||
GeneralSourceScript,
|
||||
NWBFile,
|
||||
NWBFileGeneral,
|
||||
NWBFileIntervals,
|
||||
NWBFileStimulus,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_icephys import (
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
CurrentClampSeries,
|
||||
CurrentClampSeriesData,
|
||||
IZeroClampSeries,
|
||||
CurrentClampStimulusSeries,
|
||||
CurrentClampStimulusSeriesData,
|
||||
IZeroClampSeries,
|
||||
IntracellularElectrode,
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
SweepTable,
|
||||
VoltageClampSeries,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesCapacitanceFast,
|
||||
VoltageClampSeriesCapacitanceSlow,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesResistanceCompBandwidth,
|
||||
VoltageClampSeriesResistanceCompCorrection,
|
||||
VoltageClampSeriesResistanceCompPrediction,
|
||||
|
@ -63,55 +80,41 @@ from ...core.v2_2_2.core_nwb_icephys import (
|
|||
VoltageClampSeriesWholeCellSeriesResistanceComp,
|
||||
VoltageClampStimulusSeries,
|
||||
VoltageClampStimulusSeriesData,
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_2.core_nwb_ophys import (
|
||||
TwoPhotonSeries,
|
||||
RoiResponseSeries,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
ImagingPlaneGridSpacing,
|
||||
OpticalChannel,
|
||||
MotionCorrection,
|
||||
from ...core.v2_2_2.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
ImageMaskSeries,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
IndexSeries,
|
||||
OpticalSeries,
|
||||
RGBAImage,
|
||||
RGBImage,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_misc import (
|
||||
AbstractFeatureSeries,
|
||||
AbstractFeatureSeriesData,
|
||||
AnnotationSeries,
|
||||
IntervalSeries,
|
||||
DecompositionSeries,
|
||||
DecompositionSeriesData,
|
||||
DecompositionSeriesBands,
|
||||
DecompositionSeriesData,
|
||||
IntervalSeries,
|
||||
Units,
|
||||
UnitsSpikeTimes,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_file import (
|
||||
NWBFile,
|
||||
NWBFileStimulus,
|
||||
NWBFileGeneral,
|
||||
GeneralSourceScript,
|
||||
Subject,
|
||||
GeneralExtracellularEphys,
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralIntracellularEphys,
|
||||
NWBFileIntervals,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_behavior import (
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
PupilTracking,
|
||||
EyeTracking,
|
||||
CompassDirection,
|
||||
Position,
|
||||
from ...core.v2_2_2.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_2.core_nwb_ophys import (
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneGridSpacing,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
MotionCorrection,
|
||||
OpticalChannel,
|
||||
RoiResponseSeries,
|
||||
TwoPhotonSeries,
|
||||
)
|
||||
from ...core.v2_2_2.core_nwb_retinotopy import (
|
||||
ImagingRetinotopy,
|
||||
|
@ -123,23 +126,24 @@ from ...core.v2_2_2.core_nwb_retinotopy import (
|
|||
ImagingRetinotopySignMap,
|
||||
ImagingRetinotopyVasculatureImage,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixData,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
Container,
|
||||
Data,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
ElementIdentifiers,
|
||||
Index,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
ElementIdentifiers,
|
||||
DynamicTableRegion,
|
||||
Container,
|
||||
DynamicTable,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
CSRMatrixData,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.2"
|
||||
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import Data, Container, DynamicTable
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import Container, Data, DynamicTable
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,20 +1,24 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_4.core_nwb_misc import IntervalSeries
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_misc import IntervalSeries
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import NWBContainer
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTableRegion
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import TimeSeries
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,28 +1,32 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_4.core_nwb_misc import Units
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from ...core.v2_2_4.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_4.core_nwb_ophys import ImagingPlane
|
||||
from ...core.v2_2_4.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
from ...core.v2_2_4.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_4.core_nwb_epoch import TimeIntervals
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
NWBData,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from ...core.v2_2_4.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...core.v2_2_4.core_nwb_epoch import TimeIntervals
|
||||
from ...core.v2_2_4.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_4.core_nwb_misc import Units
|
||||
from ...core.v2_2_4.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_4.core_nwb_ophys import ImagingPlane
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,15 +1,19 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import Image, TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_4.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_2_4.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
DynamicTableRegion,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
@ -178,7 +182,7 @@ class AbstractFeatureSeriesData(ConfiguredBaseModel):
|
|||
json_schema_extra={"linkml_meta": {"equals_string": "data", "ifabsent": "string(data)"}},
|
||||
)
|
||||
unit: Optional[str] = Field(
|
||||
"see 'feature_units'",
|
||||
"see ",
|
||||
description="""Since there can be different units for different features, store the units in 'feature_units'. The default value for this attribute is \"see 'feature_units'\".""",
|
||||
json_schema_extra={"linkml_meta": {"ifabsent": "string(see 'feature_units')"}},
|
||||
)
|
||||
|
|
|
@ -1,21 +1,25 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
||||
|
|
|
@ -1,36 +1,40 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
VectorIndex,
|
||||
VectorData,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
TimeSeries,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from ...core.v2_2_4.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_4.core_nwb_base import NWBDataInterface
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import NWBDataInterface
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
|
|
@ -1,61 +1,80 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_4.core_nwb_base import (
|
||||
NWBData,
|
||||
Image,
|
||||
Images,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
TimeSeriesData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
ProcessingModule,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_behavior import (
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
CompassDirection,
|
||||
EyeTracking,
|
||||
Position,
|
||||
PupilTracking,
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_device import Device
|
||||
from ...core.v2_2_4.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_4.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
RGBImage,
|
||||
RGBAImage,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
ImageMaskSeries,
|
||||
OpticalSeries,
|
||||
IndexSeries,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_ecephys import (
|
||||
ElectricalSeries,
|
||||
SpikeEventSeries,
|
||||
FeatureExtraction,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
ClusterWaveforms,
|
||||
Clustering,
|
||||
ElectricalSeries,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FeatureExtraction,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
SpikeEventSeries,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_4.core_nwb_file import (
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralExtracellularEphys,
|
||||
GeneralIntracellularEphys,
|
||||
GeneralSourceScript,
|
||||
LabMetaData,
|
||||
NWBFile,
|
||||
NWBFileGeneral,
|
||||
NWBFileIntervals,
|
||||
NWBFileStimulus,
|
||||
ScratchData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_icephys import (
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
CurrentClampSeries,
|
||||
CurrentClampSeriesData,
|
||||
IZeroClampSeries,
|
||||
CurrentClampStimulusSeries,
|
||||
CurrentClampStimulusSeriesData,
|
||||
IZeroClampSeries,
|
||||
IntracellularElectrode,
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
SweepTable,
|
||||
VoltageClampSeries,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesCapacitanceFast,
|
||||
VoltageClampSeriesCapacitanceSlow,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesResistanceCompBandwidth,
|
||||
VoltageClampSeriesResistanceCompCorrection,
|
||||
VoltageClampSeriesResistanceCompPrediction,
|
||||
|
@ -63,62 +82,46 @@ from ...core.v2_2_4.core_nwb_icephys import (
|
|||
VoltageClampSeriesWholeCellSeriesResistanceComp,
|
||||
VoltageClampStimulusSeries,
|
||||
VoltageClampStimulusSeriesData,
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_4.core_nwb_ophys import (
|
||||
TwoPhotonSeries,
|
||||
RoiResponseSeries,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
ImagingPlane,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
ImagingPlaneGridSpacing,
|
||||
OpticalChannel,
|
||||
MotionCorrection,
|
||||
CorrectedImageStack,
|
||||
from ...core.v2_2_4.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
ImageMaskSeries,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
IndexSeries,
|
||||
OpticalSeries,
|
||||
RGBAImage,
|
||||
RGBImage,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_misc import (
|
||||
AbstractFeatureSeries,
|
||||
AbstractFeatureSeriesData,
|
||||
AnnotationSeries,
|
||||
IntervalSeries,
|
||||
DecompositionSeries,
|
||||
DecompositionSeriesData,
|
||||
DecompositionSeriesBands,
|
||||
DecompositionSeriesData,
|
||||
IntervalSeries,
|
||||
Units,
|
||||
UnitsSpikeTimes,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_file import (
|
||||
ScratchData,
|
||||
NWBFile,
|
||||
NWBFileStimulus,
|
||||
NWBFileGeneral,
|
||||
GeneralSourceScript,
|
||||
GeneralExtracellularEphys,
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralIntracellularEphys,
|
||||
NWBFileIntervals,
|
||||
LabMetaData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_behavior import (
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
PupilTracking,
|
||||
EyeTracking,
|
||||
CompassDirection,
|
||||
Position,
|
||||
from ...core.v2_2_4.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_4.core_nwb_ophys import (
|
||||
CorrectedImageStack,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneGridSpacing,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
MotionCorrection,
|
||||
OpticalChannel,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
RoiResponseSeries,
|
||||
TwoPhotonSeries,
|
||||
)
|
||||
from ...core.v2_2_4.core_nwb_retinotopy import (
|
||||
ImagingRetinotopy,
|
||||
|
@ -130,23 +133,24 @@ from ...core.v2_2_4.core_nwb_retinotopy import (
|
|||
ImagingRetinotopySignMap,
|
||||
ImagingRetinotopyVasculatureImage,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixData,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
Container,
|
||||
Data,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
ElementIdentifiers,
|
||||
Index,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
ElementIdentifiers,
|
||||
DynamicTableRegion,
|
||||
Container,
|
||||
DynamicTable,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
CSRMatrixData,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.4"
|
||||
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import Data, Container, DynamicTable
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import Container, Data, DynamicTable
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,20 +1,24 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_5.core_nwb_misc import IntervalSeries
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_misc import IntervalSeries
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import NWBContainer
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTableRegion
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import TimeSeries
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,28 +1,32 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_5.core_nwb_misc import Units
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from ...core.v2_2_5.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_5.core_nwb_ophys import ImagingPlane
|
||||
from ...core.v2_2_5.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
from ...core.v2_2_5.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_5.core_nwb_epoch import TimeIntervals
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
NWBData,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from ...core.v2_2_5.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...core.v2_2_5.core_nwb_epoch import TimeIntervals
|
||||
from ...core.v2_2_5.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_2_5.core_nwb_misc import Units
|
||||
from ...core.v2_2_5.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_2_5.core_nwb_ophys import ImagingPlane
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,15 +1,19 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import Image, TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_5.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_2_5.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
DynamicTableRegion,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
@ -178,7 +182,7 @@ class AbstractFeatureSeriesData(ConfiguredBaseModel):
|
|||
json_schema_extra={"linkml_meta": {"equals_string": "data", "ifabsent": "string(data)"}},
|
||||
)
|
||||
unit: Optional[str] = Field(
|
||||
"see 'feature_units'",
|
||||
"see ",
|
||||
description="""Since there can be different units for different features, store the units in 'feature_units'. The default value for this attribute is \"see 'feature_units'\".""",
|
||||
json_schema_extra={"linkml_meta": {"ifabsent": "string(see 'feature_units')"}},
|
||||
)
|
||||
|
|
|
@ -1,21 +1,25 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
||||
|
|
|
@ -1,36 +1,40 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
VectorIndex,
|
||||
VectorData,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
TimeSeries,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from ...core.v2_2_5.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_2_5.core_nwb_base import NWBDataInterface
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import NWBDataInterface
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
|
|
@ -1,61 +1,80 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_2_5.core_nwb_base import (
|
||||
NWBData,
|
||||
Image,
|
||||
Images,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
TimeSeriesData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
ProcessingModule,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_behavior import (
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
CompassDirection,
|
||||
EyeTracking,
|
||||
Position,
|
||||
PupilTracking,
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_device import Device
|
||||
from ...core.v2_2_5.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_5.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
RGBImage,
|
||||
RGBAImage,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
ImageMaskSeries,
|
||||
OpticalSeries,
|
||||
IndexSeries,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_ecephys import (
|
||||
ElectricalSeries,
|
||||
SpikeEventSeries,
|
||||
FeatureExtraction,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
ClusterWaveforms,
|
||||
Clustering,
|
||||
ElectricalSeries,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FeatureExtraction,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
SpikeEventSeries,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_2_5.core_nwb_file import (
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralExtracellularEphys,
|
||||
GeneralIntracellularEphys,
|
||||
GeneralSourceScript,
|
||||
LabMetaData,
|
||||
NWBFile,
|
||||
NWBFileGeneral,
|
||||
NWBFileIntervals,
|
||||
NWBFileStimulus,
|
||||
ScratchData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_icephys import (
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
CurrentClampSeries,
|
||||
CurrentClampSeriesData,
|
||||
IZeroClampSeries,
|
||||
CurrentClampStimulusSeries,
|
||||
CurrentClampStimulusSeriesData,
|
||||
IZeroClampSeries,
|
||||
IntracellularElectrode,
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
SweepTable,
|
||||
VoltageClampSeries,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesCapacitanceFast,
|
||||
VoltageClampSeriesCapacitanceSlow,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesResistanceCompBandwidth,
|
||||
VoltageClampSeriesResistanceCompCorrection,
|
||||
VoltageClampSeriesResistanceCompPrediction,
|
||||
|
@ -63,62 +82,46 @@ from ...core.v2_2_5.core_nwb_icephys import (
|
|||
VoltageClampSeriesWholeCellSeriesResistanceComp,
|
||||
VoltageClampStimulusSeries,
|
||||
VoltageClampStimulusSeriesData,
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_5.core_nwb_ophys import (
|
||||
TwoPhotonSeries,
|
||||
RoiResponseSeries,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
ImagingPlane,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
ImagingPlaneGridSpacing,
|
||||
OpticalChannel,
|
||||
MotionCorrection,
|
||||
CorrectedImageStack,
|
||||
from ...core.v2_2_5.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
ImageMaskSeries,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
IndexSeries,
|
||||
OpticalSeries,
|
||||
RGBAImage,
|
||||
RGBImage,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_misc import (
|
||||
AbstractFeatureSeries,
|
||||
AbstractFeatureSeriesData,
|
||||
AnnotationSeries,
|
||||
IntervalSeries,
|
||||
DecompositionSeries,
|
||||
DecompositionSeriesData,
|
||||
DecompositionSeriesBands,
|
||||
DecompositionSeriesData,
|
||||
IntervalSeries,
|
||||
Units,
|
||||
UnitsSpikeTimes,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_file import (
|
||||
ScratchData,
|
||||
NWBFile,
|
||||
NWBFileStimulus,
|
||||
NWBFileGeneral,
|
||||
GeneralSourceScript,
|
||||
GeneralExtracellularEphys,
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralIntracellularEphys,
|
||||
NWBFileIntervals,
|
||||
LabMetaData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_behavior import (
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
PupilTracking,
|
||||
EyeTracking,
|
||||
CompassDirection,
|
||||
Position,
|
||||
from ...core.v2_2_5.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_2_5.core_nwb_ophys import (
|
||||
CorrectedImageStack,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneGridSpacing,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
MotionCorrection,
|
||||
OpticalChannel,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
RoiResponseSeries,
|
||||
TwoPhotonSeries,
|
||||
)
|
||||
from ...core.v2_2_5.core_nwb_retinotopy import (
|
||||
ImagingRetinotopy,
|
||||
|
@ -130,23 +133,24 @@ from ...core.v2_2_5.core_nwb_retinotopy import (
|
|||
ImagingRetinotopySignMap,
|
||||
ImagingRetinotopyVasculatureImage,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixData,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_table import (
|
||||
Container,
|
||||
Data,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
ElementIdentifiers,
|
||||
Index,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
ElementIdentifiers,
|
||||
DynamicTableRegion,
|
||||
Container,
|
||||
DynamicTable,
|
||||
)
|
||||
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
|
||||
CSRMatrix,
|
||||
CSRMatrixIndices,
|
||||
CSRMatrixIndptr,
|
||||
CSRMatrixData,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.2.5"
|
||||
|
||||
|
|
|
@ -1,16 +1,20 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Container, Data
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
||||
|
|
|
@ -1,20 +1,24 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_3_0.core_nwb_misc import IntervalSeries
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_misc import IntervalSeries
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import NWBContainer
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTableRegion
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import TimeSeries
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,28 +1,32 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_3_0.core_nwb_misc import Units
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from ...core.v2_3_0.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_3_0.core_nwb_ophys import ImagingPlane
|
||||
from ...core.v2_3_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
from ...core.v2_3_0.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_3_0.core_nwb_epoch import TimeIntervals
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
NWBData,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from ...core.v2_3_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...core.v2_3_0.core_nwb_epoch import TimeIntervals
|
||||
from ...core.v2_3_0.core_nwb_icephys import IntracellularElectrode, SweepTable
|
||||
from ...core.v2_3_0.core_nwb_misc import Units
|
||||
from ...core.v2_3_0.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_3_0.core_nwb_ophys import ImagingPlane
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,15 +1,19 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import Image, TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_3_0.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_3_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_3_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
@ -178,7 +182,7 @@ class AbstractFeatureSeriesData(ConfiguredBaseModel):
|
|||
json_schema_extra={"linkml_meta": {"equals_string": "data", "ifabsent": "string(data)"}},
|
||||
)
|
||||
unit: Optional[str] = Field(
|
||||
"see 'feature_units'",
|
||||
"see ",
|
||||
description="""Since there can be different units for different features, store the units in 'feature_units'. The default value for this attribute is \"see 'feature_units'\".""",
|
||||
json_schema_extra={"linkml_meta": {"ifabsent": "string(see 'feature_units')"}},
|
||||
)
|
||||
|
|
|
@ -1,21 +1,25 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
||||
|
|
|
@ -1,36 +1,40 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
VectorIndex,
|
||||
VectorData,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
TimeSeries,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from ...core.v2_3_0.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_3_0.core_nwb_base import NWBDataInterface
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import NWBDataInterface
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
|
|
@ -1,61 +1,80 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_3_0.core_nwb_base import (
|
||||
NWBData,
|
||||
Image,
|
||||
Images,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
TimeSeriesData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
ProcessingModule,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_behavior import (
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
CompassDirection,
|
||||
EyeTracking,
|
||||
Position,
|
||||
PupilTracking,
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_device import Device
|
||||
from ...core.v2_3_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_3_0.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
RGBImage,
|
||||
RGBAImage,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
ImageMaskSeries,
|
||||
OpticalSeries,
|
||||
IndexSeries,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_ecephys import (
|
||||
ElectricalSeries,
|
||||
SpikeEventSeries,
|
||||
FeatureExtraction,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
ClusterWaveforms,
|
||||
Clustering,
|
||||
ElectricalSeries,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FeatureExtraction,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
SpikeEventSeries,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_3_0.core_nwb_file import (
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralExtracellularEphys,
|
||||
GeneralIntracellularEphys,
|
||||
GeneralSourceScript,
|
||||
LabMetaData,
|
||||
NWBFile,
|
||||
NWBFileGeneral,
|
||||
NWBFileIntervals,
|
||||
NWBFileStimulus,
|
||||
ScratchData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_icephys import (
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
CurrentClampSeries,
|
||||
CurrentClampSeriesData,
|
||||
IZeroClampSeries,
|
||||
CurrentClampStimulusSeries,
|
||||
CurrentClampStimulusSeriesData,
|
||||
IZeroClampSeries,
|
||||
IntracellularElectrode,
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
SweepTable,
|
||||
VoltageClampSeries,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesCapacitanceFast,
|
||||
VoltageClampSeriesCapacitanceSlow,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesResistanceCompBandwidth,
|
||||
VoltageClampSeriesResistanceCompCorrection,
|
||||
VoltageClampSeriesResistanceCompPrediction,
|
||||
|
@ -63,62 +82,46 @@ from ...core.v2_3_0.core_nwb_icephys import (
|
|||
VoltageClampSeriesWholeCellSeriesResistanceComp,
|
||||
VoltageClampStimulusSeries,
|
||||
VoltageClampStimulusSeriesData,
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_3_0.core_nwb_ophys import (
|
||||
TwoPhotonSeries,
|
||||
RoiResponseSeries,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
ImagingPlane,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
ImagingPlaneGridSpacing,
|
||||
OpticalChannel,
|
||||
MotionCorrection,
|
||||
CorrectedImageStack,
|
||||
from ...core.v2_3_0.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
ImageMaskSeries,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
IndexSeries,
|
||||
OpticalSeries,
|
||||
RGBAImage,
|
||||
RGBImage,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_misc import (
|
||||
AbstractFeatureSeries,
|
||||
AbstractFeatureSeriesData,
|
||||
AnnotationSeries,
|
||||
IntervalSeries,
|
||||
DecompositionSeries,
|
||||
DecompositionSeriesData,
|
||||
DecompositionSeriesBands,
|
||||
DecompositionSeriesData,
|
||||
IntervalSeries,
|
||||
Units,
|
||||
UnitsSpikeTimes,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_file import (
|
||||
ScratchData,
|
||||
NWBFile,
|
||||
NWBFileStimulus,
|
||||
NWBFileGeneral,
|
||||
GeneralSourceScript,
|
||||
GeneralExtracellularEphys,
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralIntracellularEphys,
|
||||
NWBFileIntervals,
|
||||
LabMetaData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_behavior import (
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
PupilTracking,
|
||||
EyeTracking,
|
||||
CompassDirection,
|
||||
Position,
|
||||
from ...core.v2_3_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_3_0.core_nwb_ophys import (
|
||||
CorrectedImageStack,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneGridSpacing,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
MotionCorrection,
|
||||
OpticalChannel,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
RoiResponseSeries,
|
||||
TwoPhotonSeries,
|
||||
)
|
||||
from ...core.v2_3_0.core_nwb_retinotopy import (
|
||||
ImagingRetinotopy,
|
||||
|
@ -130,26 +133,27 @@ from ...core.v2_3_0.core_nwb_retinotopy import (
|
|||
ImagingRetinotopySignMap,
|
||||
ImagingRetinotopyVasculatureImage,
|
||||
)
|
||||
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Container, Data, SimpleMultiContainer
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
AlignedDynamicTable,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
ElementIdentifiers,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
ElementIdentifiers,
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
AlignedDynamicTable,
|
||||
)
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
|
||||
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
|
||||
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
|
||||
ExternalResources,
|
||||
ExternalResourcesKeys,
|
||||
ExternalResourcesEntities,
|
||||
ExternalResourcesResources,
|
||||
ExternalResourcesObjects,
|
||||
ExternalResourcesKeys,
|
||||
ExternalResourcesObjectKeys,
|
||||
ExternalResourcesObjects,
|
||||
ExternalResourcesResources,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.3.0"
|
||||
|
||||
|
|
|
@ -1,28 +1,32 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
import numpy as np
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import (
|
||||
Any,
|
||||
ClassVar,
|
||||
List,
|
||||
Literal,
|
||||
Dict,
|
||||
Optional,
|
||||
Union,
|
||||
Generic,
|
||||
Iterable,
|
||||
List,
|
||||
Literal,
|
||||
Optional,
|
||||
Tuple,
|
||||
TypeVar,
|
||||
Union,
|
||||
overload,
|
||||
)
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator, model_validator
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import VectorData, DynamicTable
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator, model_validator
|
||||
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Container, Data
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,20 +1,24 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_4_0.core_nwb_misc import IntervalSeries
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_misc import IntervalSeries
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import NWBContainer
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTableRegion
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import TimeSeries
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,36 +1,40 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_4_0.core_nwb_misc import Units
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from ...core.v2_4_0.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_4_0.core_nwb_ophys import ImagingPlane
|
||||
from ...core.v2_4_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
from ...core.v2_4_0.core_nwb_icephys import (
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
IntracellularRecordingsTable,
|
||||
SimultaneousRecordingsTable,
|
||||
SequentialRecordingsTable,
|
||||
RepetitionsTable,
|
||||
ExperimentalConditionsTable,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_epoch import TimeIntervals
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
NWBData,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from ...core.v2_4_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...core.v2_4_0.core_nwb_epoch import TimeIntervals
|
||||
from ...core.v2_4_0.core_nwb_icephys import (
|
||||
ExperimentalConditionsTable,
|
||||
IntracellularElectrode,
|
||||
IntracellularRecordingsTable,
|
||||
RepetitionsTable,
|
||||
SequentialRecordingsTable,
|
||||
SimultaneousRecordingsTable,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_misc import Units
|
||||
from ...core.v2_4_0.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_4_0.core_nwb_ophys import ImagingPlane
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,36 +1,40 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
TimeSeriesReferenceVectorData,
|
||||
)
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesReferenceVectorData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
VectorIndex,
|
||||
VectorData,
|
||||
AlignedDynamicTable,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,15 +1,19 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import Image, TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,29 +1,33 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_4_0.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_4_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import TimeSeries, TimeSeriesStartingTime, TimeSeriesSync
|
||||
from ...core.v2_4_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
@ -178,7 +182,7 @@ class AbstractFeatureSeriesData(ConfiguredBaseModel):
|
|||
json_schema_extra={"linkml_meta": {"equals_string": "data", "ifabsent": "string(data)"}},
|
||||
)
|
||||
unit: Optional[str] = Field(
|
||||
"see 'feature_units'",
|
||||
"see ",
|
||||
description="""Since there can be different units for different features, store the units in 'feature_units'. The default value for this attribute is \"see 'feature_units'\".""",
|
||||
json_schema_extra={"linkml_meta": {"ifabsent": "string(see 'feature_units')"}},
|
||||
)
|
||||
|
|
|
@ -1,21 +1,25 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
||||
|
|
|
@ -1,36 +1,40 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
VectorIndex,
|
||||
VectorData,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
TimeSeries,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from ...core.v2_4_0.core_nwb_image import ImageSeries, ImageSeriesExternalFile
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_4_0.core_nwb_base import NWBDataInterface
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import NWBDataInterface
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
|
|
@ -1,62 +1,93 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_4_0.core_nwb_base import (
|
||||
NWBData,
|
||||
TimeSeriesReferenceVectorData,
|
||||
Image,
|
||||
Images,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
TimeSeriesData,
|
||||
TimeSeriesReferenceVectorData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
ProcessingModule,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_behavior import (
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
CompassDirection,
|
||||
EyeTracking,
|
||||
Position,
|
||||
PupilTracking,
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_device import Device
|
||||
from ...core.v2_4_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_4_0.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
RGBImage,
|
||||
RGBAImage,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
ImageMaskSeries,
|
||||
OpticalSeries,
|
||||
IndexSeries,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_ecephys import (
|
||||
ElectricalSeries,
|
||||
SpikeEventSeries,
|
||||
FeatureExtraction,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
ClusterWaveforms,
|
||||
Clustering,
|
||||
ElectricalSeries,
|
||||
ElectrodeGroup,
|
||||
ElectrodeGroupPosition,
|
||||
EventDetection,
|
||||
EventWaveform,
|
||||
FeatureExtraction,
|
||||
FilteredEphys,
|
||||
LFP,
|
||||
SpikeEventSeries,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
|
||||
from ...core.v2_4_0.core_nwb_file import (
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralExtracellularEphys,
|
||||
GeneralIntracellularEphys,
|
||||
GeneralSourceScript,
|
||||
LabMetaData,
|
||||
NWBFile,
|
||||
NWBFileGeneral,
|
||||
NWBFileIntervals,
|
||||
NWBFileStimulus,
|
||||
ScratchData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_icephys import (
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
CurrentClampSeries,
|
||||
CurrentClampSeriesData,
|
||||
IZeroClampSeries,
|
||||
CurrentClampStimulusSeries,
|
||||
CurrentClampStimulusSeriesData,
|
||||
ExperimentalConditionsTable,
|
||||
ExperimentalConditionsTableRepetitions,
|
||||
IZeroClampSeries,
|
||||
IntracellularElectrode,
|
||||
IntracellularElectrodesTable,
|
||||
IntracellularRecordingsTable,
|
||||
IntracellularResponsesTable,
|
||||
IntracellularStimuliTable,
|
||||
PatchClampSeries,
|
||||
PatchClampSeriesData,
|
||||
RepetitionsTable,
|
||||
RepetitionsTableSequentialRecordings,
|
||||
SequentialRecordingsTable,
|
||||
SequentialRecordingsTableSimultaneousRecordings,
|
||||
SimultaneousRecordingsTable,
|
||||
SimultaneousRecordingsTableRecordings,
|
||||
SweepTable,
|
||||
VoltageClampSeries,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesCapacitanceFast,
|
||||
VoltageClampSeriesCapacitanceSlow,
|
||||
VoltageClampSeriesData,
|
||||
VoltageClampSeriesResistanceCompBandwidth,
|
||||
VoltageClampSeriesResistanceCompCorrection,
|
||||
VoltageClampSeriesResistanceCompPrediction,
|
||||
|
@ -64,74 +95,46 @@ from ...core.v2_4_0.core_nwb_icephys import (
|
|||
VoltageClampSeriesWholeCellSeriesResistanceComp,
|
||||
VoltageClampStimulusSeries,
|
||||
VoltageClampStimulusSeriesData,
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
IntracellularElectrodesTable,
|
||||
IntracellularStimuliTable,
|
||||
IntracellularResponsesTable,
|
||||
IntracellularRecordingsTable,
|
||||
SimultaneousRecordingsTable,
|
||||
SimultaneousRecordingsTableRecordings,
|
||||
SequentialRecordingsTable,
|
||||
SequentialRecordingsTableSimultaneousRecordings,
|
||||
RepetitionsTable,
|
||||
RepetitionsTableSequentialRecordings,
|
||||
ExperimentalConditionsTable,
|
||||
ExperimentalConditionsTableRepetitions,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_4_0.core_nwb_ophys import (
|
||||
TwoPhotonSeries,
|
||||
RoiResponseSeries,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
ImagingPlane,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
ImagingPlaneGridSpacing,
|
||||
OpticalChannel,
|
||||
MotionCorrection,
|
||||
CorrectedImageStack,
|
||||
from ...core.v2_4_0.core_nwb_image import (
|
||||
GrayscaleImage,
|
||||
ImageMaskSeries,
|
||||
ImageSeries,
|
||||
ImageSeriesExternalFile,
|
||||
IndexSeries,
|
||||
OpticalSeries,
|
||||
RGBAImage,
|
||||
RGBImage,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_misc import (
|
||||
AbstractFeatureSeries,
|
||||
AbstractFeatureSeriesData,
|
||||
AnnotationSeries,
|
||||
IntervalSeries,
|
||||
DecompositionSeries,
|
||||
DecompositionSeriesData,
|
||||
DecompositionSeriesBands,
|
||||
DecompositionSeriesData,
|
||||
IntervalSeries,
|
||||
Units,
|
||||
UnitsSpikeTimes,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_file import (
|
||||
ScratchData,
|
||||
NWBFile,
|
||||
NWBFileStimulus,
|
||||
NWBFileGeneral,
|
||||
GeneralSourceScript,
|
||||
GeneralExtracellularEphys,
|
||||
ExtracellularEphysElectrodes,
|
||||
GeneralIntracellularEphys,
|
||||
NWBFileIntervals,
|
||||
LabMetaData,
|
||||
Subject,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_behavior import (
|
||||
SpatialSeries,
|
||||
SpatialSeriesData,
|
||||
BehavioralEpochs,
|
||||
BehavioralEvents,
|
||||
BehavioralTimeSeries,
|
||||
PupilTracking,
|
||||
EyeTracking,
|
||||
CompassDirection,
|
||||
Position,
|
||||
from ...core.v2_4_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
|
||||
from ...core.v2_4_0.core_nwb_ophys import (
|
||||
CorrectedImageStack,
|
||||
DfOverF,
|
||||
Fluorescence,
|
||||
ImageSegmentation,
|
||||
ImagingPlane,
|
||||
ImagingPlaneGridSpacing,
|
||||
ImagingPlaneManifold,
|
||||
ImagingPlaneOriginCoords,
|
||||
MotionCorrection,
|
||||
OpticalChannel,
|
||||
PlaneSegmentation,
|
||||
PlaneSegmentationImageMask,
|
||||
PlaneSegmentationPixelMask,
|
||||
PlaneSegmentationVoxelMask,
|
||||
RoiResponseSeries,
|
||||
TwoPhotonSeries,
|
||||
)
|
||||
from ...core.v2_4_0.core_nwb_retinotopy import (
|
||||
ImagingRetinotopy,
|
||||
|
@ -143,26 +146,27 @@ from ...core.v2_4_0.core_nwb_retinotopy import (
|
|||
ImagingRetinotopySignMap,
|
||||
ImagingRetinotopyVasculatureImage,
|
||||
)
|
||||
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Container, Data, SimpleMultiContainer
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
AlignedDynamicTable,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
ElementIdentifiers,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
ElementIdentifiers,
|
||||
DynamicTableRegion,
|
||||
DynamicTable,
|
||||
AlignedDynamicTable,
|
||||
)
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
|
||||
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
|
||||
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
|
||||
ExternalResources,
|
||||
ExternalResourcesKeys,
|
||||
ExternalResourcesEntities,
|
||||
ExternalResourcesResources,
|
||||
ExternalResourcesObjects,
|
||||
ExternalResourcesKeys,
|
||||
ExternalResourcesObjectKeys,
|
||||
ExternalResourcesObjects,
|
||||
ExternalResourcesResources,
|
||||
)
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.4.0"
|
||||
|
||||
|
|
|
@ -1,40 +1,44 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import VectorData, DynamicTable
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import (
|
||||
Annotated,
|
||||
Any,
|
||||
ClassVar,
|
||||
List,
|
||||
Literal,
|
||||
Dict,
|
||||
Optional,
|
||||
Union,
|
||||
Generic,
|
||||
Iterable,
|
||||
List,
|
||||
Literal,
|
||||
Optional,
|
||||
Tuple,
|
||||
TypeVar,
|
||||
overload,
|
||||
Annotated,
|
||||
Type,
|
||||
TypeVar,
|
||||
Union,
|
||||
overload,
|
||||
)
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
ValidationInfo,
|
||||
field_validator,
|
||||
model_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
)
|
||||
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_base import Container, Data
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
||||
|
|
|
@ -1,20 +1,24 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_5_0.core_nwb_misc import IntervalSeries
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_5_0.core_nwb_base import (
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
)
|
||||
from ...core.v2_5_0.core_nwb_misc import IntervalSeries
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
|
|
@ -1,14 +1,18 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_5_0.core_nwb_base import NWBContainer
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
||||
|
|
|
@ -1,30 +1,34 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTableRegion
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
|
||||
from ...core.v2_5_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
NWBDataInterface,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBDataInterface,
|
||||
NWBContainer,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTableRegion
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
|
|
@ -1,23 +1,27 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_5_0.core_nwb_base import TimeSeriesReferenceVectorData
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorIndex, VectorData
|
||||
|
||||
from ...core.v2_5_0.core_nwb_base import TimeSeriesReferenceVectorData
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData, VectorIndex
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
|
|
@ -1,37 +1,41 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_5_0.core_nwb_misc import Units
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
from ...core.v2_5_0.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_5_0.core_nwb_ophys import ImagingPlane
|
||||
from ...core.v2_5_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from numpydantic import NDArray, Shape
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
from ...core.v2_5_0.core_nwb_icephys import (
|
||||
IntracellularElectrode,
|
||||
SweepTable,
|
||||
IntracellularRecordingsTable,
|
||||
SimultaneousRecordingsTable,
|
||||
SequentialRecordingsTable,
|
||||
RepetitionsTable,
|
||||
ExperimentalConditionsTable,
|
||||
)
|
||||
from ...core.v2_5_0.core_nwb_epoch import TimeIntervals
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_5_0.core_nwb_base import (
|
||||
NWBData,
|
||||
Images,
|
||||
NWBContainer,
|
||||
NWBData,
|
||||
NWBDataInterface,
|
||||
ProcessingModule,
|
||||
TimeSeries,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
from ...core.v2_5_0.core_nwb_ecephys import ElectrodeGroup
|
||||
from ...core.v2_5_0.core_nwb_epoch import TimeIntervals
|
||||
from ...core.v2_5_0.core_nwb_icephys import (
|
||||
ExperimentalConditionsTable,
|
||||
IntracellularElectrode,
|
||||
IntracellularRecordingsTable,
|
||||
RepetitionsTable,
|
||||
SequentialRecordingsTable,
|
||||
SimultaneousRecordingsTable,
|
||||
SweepTable,
|
||||
)
|
||||
from ...core.v2_5_0.core_nwb_misc import Units
|
||||
from ...core.v2_5_0.core_nwb_ogen import OptogeneticStimulusSite
|
||||
from ...core.v2_5_0.core_nwb_ophys import ImagingPlane
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import DynamicTable, VectorData
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
|
|
@ -1,36 +1,40 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Annotated, Any, ClassVar, Dict, List, Literal, Optional, Type, TypeVar, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
from ...core.v2_5_0.core_nwb_base import (
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
NWBContainer,
|
||||
TimeSeriesReferenceVectorData,
|
||||
)
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, Annotated, Type, TypeVar
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import (
|
||||
BaseModel,
|
||||
BeforeValidator,
|
||||
ConfigDict,
|
||||
Field,
|
||||
RootModel,
|
||||
field_validator,
|
||||
ValidationInfo,
|
||||
BeforeValidator,
|
||||
field_validator,
|
||||
)
|
||||
|
||||
from ...core.v2_5_0.core_nwb_base import (
|
||||
NWBContainer,
|
||||
TimeSeries,
|
||||
TimeSeriesReferenceVectorData,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
)
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
from ...hdmf_common.v1_5_0.hdmf_common_table import (
|
||||
DynamicTable,
|
||||
VectorIndex,
|
||||
VectorData,
|
||||
AlignedDynamicTable,
|
||||
DynamicTable,
|
||||
DynamicTableRegion,
|
||||
VectorData,
|
||||
VectorIndex,
|
||||
)
|
||||
from numpydantic import NDArray, Shape
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
|
|
@ -1,21 +1,25 @@
|
|||
from __future__ import annotations
|
||||
from datetime import datetime, date
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
|
||||
import re
|
||||
import sys
|
||||
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
from datetime import date, datetime, time
|
||||
from decimal import Decimal
|
||||
from enum import Enum
|
||||
from typing import Any, ClassVar, Dict, List, Literal, Optional, Union
|
||||
|
||||
import numpy as np
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
from numpydantic import NDArray, Shape
|
||||
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
|
||||
|
||||
from ...core.v2_5_0.core_nwb_base import (
|
||||
Image,
|
||||
Images,
|
||||
TimeSeries,
|
||||
TimeSeriesStartingTime,
|
||||
TimeSeriesSync,
|
||||
Images,
|
||||
)
|
||||
from ...core.v2_5_0.core_nwb_device import Device
|
||||
|
||||
|
||||
metamodel_version = "None"
|
||||
version = "2.5.0"
|
||||
|
|
Some files were not shown because too many files have changed in this diff Show more
Loading…
Reference in a new issue