p2p-ld/nwb-linkml
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lint and lock

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sneakers-the-rat 2024-08-15 23:34:14 -07:00
parent a7a935d508
commit 8375fe1e11
Signed by untrusted user who does not match committer: jonny
GPG key ID: 6DCB96EF1E4D232D
2 changed files with 39 additions and 23 deletions
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60
nwb_linkml/pdm.lock
View file

@ -5,7 +5,7 @@
groups = ["default", "dev", "plot", "tests"] groups = ["default", "dev", "plot", "tests"]
strategy = ["inherit_metadata"] strategy = ["inherit_metadata"]
lock_version = "4.5.0" lock_version = "4.5.0"
content_hash = "sha256:d9e9b2a7f48f3db3e59cd58907a18aa69f91595d07eca53be0bf53b5fb2ba990" content_hash = "sha256:3223b7fb1c0ac9877a6d8af33e55f10e54fe8eb3a8b4fa053d3e7082863260ac"
[[metadata.targets]] [[metadata.targets]]
requires_python = ">=3.10,<3.13" requires_python = ">=3.10,<3.13"
@ -512,7 +512,7 @@ version = "3.0.3"
requires_python = ">=3.7" requires_python = ">=3.7"
summary = "Lightweight in-process concurrent programming" summary = "Lightweight in-process concurrent programming"
groups = ["default"] groups = ["default"]
marker = "platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\"" marker = "(platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\") and python_version < \"3.13\""
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@ -1038,6 +1038,22 @@ files = [
{file = "numpydantic-1.3.3.tar.gz", hash = "sha256:1cc2744f7b5fbcecd51a64fafaf8c9a564bb296336a566a16be97ba7b1c28698"}, {file = "numpydantic-1.3.3.tar.gz", hash = "sha256:1cc2744f7b5fbcecd51a64fafaf8c9a564bb296336a566a16be97ba7b1c28698"},
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[[package]]
name = "nwb-models"
version = "0.1.0"
requires_python = ">=3.10"
summary = "Pydantic/LinkML models for Neurodata Without Borders"
groups = ["default"]
dependencies = [
"numpydantic>=1.3.3",
"pandas>=2.2.2",
"pydantic>=2.3.0",
]
files = [
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[[package]] [[package]]
name = "nwb-schema-language" name = "nwb-schema-language"
version = "0.1.3" version = "0.1.3"
@ -1758,7 +1774,7 @@ version = "0.2.8"
requires_python = ">=3.6" requires_python = ">=3.6"
summary = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml" summary = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
groups = ["default"] groups = ["default"]
marker = "platform_python_implementation == \"CPython\"" marker = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""
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summary = "An extremely fast Python linter and code formatter, written in Rust." summary = "An extremely fast Python linter and code formatter, written in Rust."
groups = ["dev"] groups = ["dev"]
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[[package]] [[package]]

2
nwb_linkml/src/nwb_linkml/io/hdf5.py
View file

@ -38,8 +38,8 @@ from tqdm import tqdm
from nwb_linkml.maps.hdf5 import ReadPhases, ReadQueue, flatten_hdf from nwb_linkml.maps.hdf5 import ReadPhases, ReadQueue, flatten_hdf
if TYPE_CHECKING: if TYPE_CHECKING:
from nwb_models.models import NWBFile
from nwb_linkml.providers.schema import SchemaProvider from nwb_linkml.providers.schema import SchemaProvider
from nwb_models.models import NWBFile
if sys.version_info.minor >= 11: if sys.version_info.minor >= 11:
from typing import Never from typing import Never