diff --git a/.gitignore b/.gitignore
index 307837d..b221948 100644
--- a/.gitignore
+++ b/.gitignore
@@ -162,4 +162,6 @@ cython_debug/
 nwb.schema.json
 __tmp__
 prof
-jupyter_execute
\ No newline at end of file
+jupyter_execute
+
+.pdm-python
\ No newline at end of file
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index dffa34c..13242d7 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -9,18 +9,24 @@ version: 2
 sphinx:
    configuration: docs/conf.py
 
+python:
+  install:
+    - method: pip
+      path: docs
+
+
 build:
  os: ubuntu-22.04
  tools:
    python: "3.11"
- jobs:
-   post_create_environment:
-     - pip install poetry
-     - pip install poetry-kernel
-     - poetry config virtualenvs.create false
-   post_install:
-     - poetry install --no-root
-     #- poetry run python -m ipykernel install --name nwb-linkml_docs
+# jobs:
+#   post_create_environment:
+#     - pip install poetry
+#     - pip install poetry-kernel
+#     - poetry config virtualenvs.create false
+#   post_install:
+#     - poetry install --no-root
+#     #- poetry run python -m ipykernel install --name nwb-linkml_docs
 
 # Optionally build your docs in additional formats such as PDF and ePub
 # formats:
diff --git a/docs/pyproject.toml b/docs/pyproject.toml
new file mode 100644
index 0000000..f3eafbe
--- /dev/null
+++ b/docs/pyproject.toml
@@ -0,0 +1,39 @@
+[project]
+name = "nwb-linkml-docs"
+version = "0.1.0"
+description = "Dependency management to build nwb-linkml docs, see individual packages for actual package deps"
+authors = [
+    {name = "sneakers-the-rat", email = "JLSaunders987@gmail.com"},
+]
+license = {text = "AGPL-3.0"}
+requires-python = "<3.13,>=3.10"
+dependencies = [
+#    "nwb-linkml",
+#    "nwb-schema-language",
+    "sphinx<8.0.0,>=7.2.5",
+    "furo>=2023.8.19",
+    "myst-parser>=2.0.0",
+    "autodoc-pydantic>=2.0.1",
+    "nptyping>=2.5.0",
+    "sphinx-autobuild>=2021.3.14",
+    "nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml",
+    "nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language",
+    "sphinx-design>=0.5.0",
+    "sphinx-togglebutton>=0.3.2",
+    "myst-nb @ git+https://github.com/executablebooks/MyST-NB.git",
+    "ipykernel>=6.25.2",
+    "ipywidgets>=8.1.1",
+]
+
+[build-system]
+requires = ["pdm-backend"]
+build-backend = "pdm.backend"
+
+[tool.codespell]
+# Ref: https://github.com/codespell-project/codespell#using-a-config-file
+skip = '.git*,*.lock,*.css,./nwb_linkml/src/nwb_linkml/models,./nwb_linkml/src/nwb_linkml/schema'
+check-hidden = true
+# ignore-regex = ''
+# ignore-words-list = ''
+
+
diff --git a/nwb_linkml/poetry.lock b/nwb_linkml/poetry.lock
deleted file mode 100644
index 0dba77f..0000000
--- a/nwb_linkml/poetry.lock
+++ /dev/null
@@ -1,2704 +0,0 @@
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-
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-]
-
-[package.extras]
-docs = ["Sphinx", "setuptools-scm", "sphinx-rtd-theme"]
-test = ["pytest", "pytest-cov"]
-
-[[package]]
-name = "antlr4-python3-runtime"
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-description = "ANTLR 4.9.3 runtime for Python 3.7"
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-
-[[package]]
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-
-[package.dependencies]
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-types-python-dateutil = ">=2.8.10"
-
-[package.extras]
-doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
-test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
-
-[[package]]
-name = "attrs"
-version = "23.1.0"
-description = "Classes Without Boilerplate"
-optional = false
-python-versions = ">=3.7"
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-[package.extras]
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-dev = ["attrs[docs,tests]", "pre-commit"]
-docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
-tests = ["attrs[tests-no-zope]", "zope-interface"]
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-
-[[package]]
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-
-[[package]]
-name = "zipp"
-version = "3.17.0"
-description = "Backport of pathlib-compatible object wrapper for zip files"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
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-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
-
-[extras]
-plot = ["dash", "dash-cytoscape"]
-tests = ["coverage", "coveralls", "pytest", "pytest-cov", "pytest-depends", "pytest-md", "pytest-profiling"]
-
-[metadata]
-lock-version = "2.0"
-python-versions = ">=3.11,<3.13"
-content-hash = "673c81c4d38d7d0014804459ac152837e6f19bee122a5ea632c3499e86eaed9f"
diff --git a/nwb_linkml/pyproject.toml b/nwb_linkml/pyproject.toml
index cf8c7fe..26de1db 100644
--- a/nwb_linkml/pyproject.toml
+++ b/nwb_linkml/pyproject.toml
@@ -1,80 +1,57 @@
-[tool.poetry]
+[project]
 name = "nwb-linkml"
-version = "0.1.0"
 description = "Translating NWB schema language to LinkML"
-authors = ["sneakers-the-rat <JLSaunders987@gmail.com>"]
-license = "GPL-3.0"
+version = "0.1.0"
+authors = [
+    {name = "sneakers-the-rat", email = "sneakers-the-rat@protonmail.me"},
+]
+license = {text = "AGPL-3.0"}
 readme = "README.md"
+requires-python = "<3.13,>=3.10"
+dependencies = [
+    "pyyaml>=6.0",
+    "linkml-runtime>=1.7.7",
+    "nwb-schema-language>=0.1.3",
+    "rich>=13.5.2",
+    "linkml>=1.7.10",
+    "nptyping>=2.5.0",
+    "pydantic>=2.3.0",
+    "h5py>=3.9.0",
+    "pydantic-settings>=2.0.3",
+    "dask>=2023.9.2",
+    "blosc2>=2.2.7",
+    "tqdm>=4.66.1",
+]
+
+[project.urls]
 homepage = "https://nwb-linkml.readthedocs.io"
 repository = "https://github.com/p2p-ld/nwb-linkml/"
 documentation = "https://nwb-linkml.readthedocs.io"
-packages = [
-    {include = "nwb_linkml", from="src"},
-    #{include = "nwb_schema_language", from="../nwb_schema_language/src"}
+
+[project.optional-dependencies]
+plot = [
+    "dash<3.0.0,>=2.12.1",
+    "dash-cytoscape<1.0.0,>=0.3.0",
 ]
-include = [
-    'src/nwb_linkml/schema/**/*'
-]
-
-
-[tool.poetry.dependencies]
-python = ">=3.11,<3.13"
-pyyaml = "^6.0"
-linkml-runtime = "^1.6.0"
-nwb_schema_language = "^0.1.3"
-rich = "^13.5.2"
-linkml = "^1.6.1"
-nptyping = "^2.5.0"
-pydantic = "^2.3.0"
-h5py = "^3.9.0"
-pydantic-settings = "^2.0.3"
-dask = "^2023.9.2"
-blosc2 = "^2.2.7"
-tqdm = "^4.66.1"
-dash = {version="^2.12.1", optional=true}
-dash-cytoscape = {version="^0.3.0", optional=true}
-pytest = { version="^7.4.0", optional=true}
-pytest-depends = {version="^1.0.1", optional=true}
-coverage = {version = "^6.1.1", optional = true}
-pytest-md = {version = "^0.2.0", optional = true}
-pytest-cov = {version = "^4.1.0", optional = true}
-coveralls = {version = "^3.3.1", optional = true}
-pytest-profiling = {version = "^1.7.0", optional = true}
-sybil = {version = "^5.0.3", optional = true}
-
-
-[tool.poetry.extras]
 tests = [
-    "pytest",       "pytest-depends", "coverage",         "pytest-md",
-    "pytest-cov",   "coveralls",      "pytest-profiling", "sybil"
+    "pytest<8.0.0,>=7.4.0",
+    "pytest-depends<2.0.0,>=1.0.1",
+    "coverage<7.0.0,>=6.1.1",
+    "pytest-md<1.0.0,>=0.2.0",
+    "pytest-cov<5.0.0,>=4.1.0",
+    "coveralls<4.0.0,>=3.3.1",
+    "pytest-profiling<2.0.0,>=1.7.0",
+    "sybil<6.0.0,>=5.0.3",
 ]
-plot = ["dash", "dash-cytoscape"]
 
+[tool.pdm]
+distribution = true
 
-[tool.poetry.group.tests]
-optional = true
-
-[tool.poetry.group.tests.dependencies]
-pytest = "^7.4.0"
-pytest-depends = "^1.0.1"
-coverage = "^6.1.1"
-pytest-md = "^0.2.0"
-pytest-cov = "^4.1.0"
-coveralls = "^3.3.1"
-pytest-profiling = "^1.7.0"
-sybil = "^5.0.3"
-
-[tool.poetry.group.plot]
-optional = true
-
-[tool.poetry.group.plot.dependencies]
-dash = "^2.12.1"
-dash-cytoscape = "^0.3.0"
-
+[tool.pdm.build]
+includes = ["src/nwb_linkml", "src/nwb_linkml/schema/**/*"]
 [build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
-
+requires = ["pdm-backend"]
+build-backend = "pdm.backend"
 
 [tool.pytest.ini_options]
 addopts = [
@@ -93,4 +70,4 @@ doctest_optionflags = "NORMALIZE_WHITESPACE"
 filterwarnings = [
     "ignore::DeprecationWarning",
     "ignore:parse_obj:pydantic.PydanticDeprecatedSince20"
-]
\ No newline at end of file
+]
diff --git a/nwb_schema_language/poetry.lock b/nwb_schema_language/poetry.lock
deleted file mode 100644
index 1859ded..0000000
--- a/nwb_schema_language/poetry.lock
+++ /dev/null
@@ -1,2545 +0,0 @@
-# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
-
-[[package]]
-name = "annotated-types"
-version = "0.6.0"
-description = "Reusable constraint types to use with typing.Annotated"
-optional = false
-python-versions = ">=3.8"
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-    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
-]
-
-[[package]]
-name = "antlr4-python3-runtime"
-version = "4.9.3"
-description = "ANTLR 4.9.3 runtime for Python 3.7"
-optional = false
-python-versions = "*"
-files = [
-    {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
-]
-
-[[package]]
-name = "arrow"
-version = "1.3.0"
-description = "Better dates & times for Python"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
-    {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
-]
-
-[package.dependencies]
-python-dateutil = ">=2.7.0"
-types-python-dateutil = ">=2.8.10"
-
-[package.extras]
-doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
-test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
-
-[[package]]
-name = "attrs"
-version = "23.1.0"
-description = "Classes Without Boilerplate"
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"},
-    {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"},
-]
-
-[package.extras]
-cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
-dev = ["attrs[docs,tests]", "pre-commit"]
-docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
-tests = ["attrs[tests-no-zope]", "zope-interface"]
-tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-
-[[package]]
-name = "beautifulsoup4"
-version = "4.12.2"
-description = "Screen-scraping library"
-optional = false
-python-versions = ">=3.6.0"
-files = [
-    {file = "beautifulsoup4-4.12.2-py3-none-any.whl", hash = "sha256:bd2520ca0d9d7d12694a53d44ac482d181b4ec1888909b035a3dbf40d0f57d4a"},
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-
-[package.dependencies]
-soupsieve = ">1.2"
-
-[package.extras]
-html5lib = ["html5lib"]
-lxml = ["lxml"]
-
-[[package]]
-name = "bioregistry"
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-description = "Integrated registry of biological databases and nomenclatures"
-optional = false
-python-versions = ">=3.8"
-files = [
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-
-[package.extras]
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-health = ["click-default-group", "jinja2", "pandas", "pyyaml", "tabulate"]
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-
-[[package]]
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-
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-[[package]]
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-
-[[package]]
-name = "zipp"
-version = "3.17.0"
-description = "Backport of pathlib-compatible object wrapper for zip files"
-optional = false
-python-versions = ">=3.8"
-files = [
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-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
-
-[extras]
-docs = []
-
-[metadata]
-lock-version = "2.0"
-python-versions = "^3.9"
-content-hash = "64b3d27885bd38afe892c662d06a69f48e980d5464922329aad071e2893f40d9"
diff --git a/nwb_schema_language/pyproject.toml b/nwb_schema_language/pyproject.toml
index a7849ad..1a59159 100644
--- a/nwb_schema_language/pyproject.toml
+++ b/nwb_schema_language/pyproject.toml
@@ -1,36 +1,39 @@
-[tool.poetry]
-name = "nwb_schema_language"
+[project]
+name = "nwb-schema-language"
+authors = [
+    {name = "Jonny Saunders", email = "j@nny.fyi"},
+]
+license = {text = "AGPL-3.0"}
+requires-python = "<3.13,>=3.10"
+dependencies = [
+    "linkml-runtime>=1.7.7",
+    "pydantic>=2.3.0",
+]
 version = "0.1.3"
 description = "Translation of the nwb-schema-language to LinkML"
-authors = ["Jonny Saunders <j@nny.fyi>"]
-license = "GNU GPL v3.0"
 readme = "README.md"
+
+[project.urls]
 homepage = "https://nwb-linkml.readthedocs.io"
 repository = "https://github.com/p2p-ld/nwb-linkml/"
 documentation = "https://nwb-linkml.readthedocs.io"
-packages = [
-    { include = "nwb_schema_language", from="src"}
+
+[project.scripts]
+run_patches = "nwb_schema_language.patches:main"
+
+[tool.pdm]
+[tool.pdm.dev-dependencies]
+dev = [
+    "linkml<2.0.0,>=1.3.5",
+    "mkdocs-material<9.0.0,>=8.2.8",
+    "mkdocs-mermaid2-plugin<1.0.0,>=0.6.0",
+    "schemasheets<1.0.0,>=0.1.14",
 ]
-include = ["README.md", "src/nwb_schema_language/schema", "project"]
 
-[tool.poetry.dependencies]
-python = "^3.9"
-linkml-runtime = "^1.1.24"
-pydantic = "^2.3.0"
-
-
-[tool.poetry.dev-dependencies]
-linkml = "^1.3.5"
-mkdocs-material = "^8.2.8"
-mkdocs-mermaid2-plugin = "^0.6.0"
-schemasheets = "^0.1.14"
-
-[tool.poetry.scripts]
-run_patches = 'nwb_schema_language.patches:main'
+[tool.pdm.build]
+includes = ["src/nwb_schema_language", "README.md", "src/nwb_schema_language/schema", "project"]
 
 [build-system]
-requires = ["poetry-core>=1.0.0"]
-build-backend = "poetry.core.masonry.api"
+requires = ["pdm-backend"]
+build-backend = "pdm.backend"
 
-[tool.poetry.extras]
-docs = ["linkml", "mkdocs-material"]
\ No newline at end of file
diff --git a/pdm.lock b/pdm.lock
new file mode 100644
index 0000000..de9ba95
--- /dev/null
+++ b/pdm.lock
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-]
-
-[[package]]
-name = "zipp"
-version = "3.17.0"
-description = "Backport of pathlib-compatible object wrapper for zip files"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
-    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
-]
-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
-
-[metadata]
-lock-version = "2.0"
-python-versions = ">=3.11,<3.13"
-content-hash = "ded57192436be13bc610d62d9eed6ee4df0ac7461bd3f1d5692f8b848157a6ac"
diff --git a/pyproject.toml b/pyproject.toml
index 35a1fe5..05e699f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,39 +1,11 @@
-[tool.poetry]
-name = "nwb-linkml-docs"
-version = "0.1.0"
-description = "Dependency management to build nwb-linkml docs, see individual packages for actual package deps"
-authors = ["sneakers-the-rat <JLSaunders987@gmail.com>"]
-license = "AGPL-3.0"
-readme = "README.md"
-packages = [
-    {include = "nwb_linkml", from="nwb_linkml/src"},
-    {include = "nwb_schema_language", from="nwb_schema_language/src"}
-]
+[project]
+description = "Monorepo root for nwb-linkml"
+dependencies = []
+requires-python = "<3.13,>=3.10"
 
-[tool.poetry.dependencies]
-python = ">=3.11,<3.13"
-sphinx = "^7.2.5"
-furo = "^2023.8.19"
-myst-parser = "^2.0.0"
-autodoc-pydantic = "^2.0.1"
-nptyping = "^2.5.0"
-sphinx-autobuild = "^2021.3.14"
-nwb-linkml = { path = './nwb_linkml', develop = true }
-nwb_schema_language = { path = './nwb_schema_language', develop = true }
-sphinx-design = "^0.5.0"
-sphinx-togglebutton = "^0.3.2"
-myst-nb = { git = "https://github.com/executablebooks/MyST-NB.git" }
-ipykernel = "^6.25.2"
-ipywidgets = "^8.1.1"
-
-
-[build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
-
-[tool.codespell]
-# Ref: https://github.com/codespell-project/codespell#using-a-config-file
-skip = '.git*,*.lock,*.css,./nwb_linkml/src/nwb_linkml/models,./nwb_linkml/src/nwb_linkml/schema'
-check-hidden = true
-# ignore-regex = ''
-# ignore-words-list = ''
+[tool.pdm.dev-dependencies]
+dev = [
+    '-e nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml',
+    '-e nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language',
+    '-e docs @ file:///${PROJECT_ROOT}/docs',
+]
\ No newline at end of file