diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 35ed93f..baeba81 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -19,8 +19,6 @@ build: - poetry config virtualenvs.create false post_install: - poetry install --no-root - - pip install ./nwb_linkml - - pip install ./nwb_schema_language # Optionally build your docs in additional formats such as PDF and ePub # formats: diff --git a/docs/Makefile b/docs/Makefile index d4bb2cb..c09f941 100644 --- a/docs/Makefile +++ b/docs/Makefile @@ -14,7 +14,32 @@ help: .PHONY: help Makefile +serve: + sphinx-autobuild "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) --watch ../nwb_linkml/src/nwb_linkml --watch ../nwb_schema_language/src/nwb_schema_language + +serve_fast: + sphinx-autobuild -a "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) --watch ../nwb_linkml/src/nwb_linkml --watch ../nwb_schema_language/src/nwb_schema_language + + + +models: + export SPHINX_APIDOC_OPTIONS="members,show-inheritance,exclude-members ConfiguredBaseClass" + rm ./api/models/* + sphinx-apidoc -e --force \ + --templatedir=./_templates \ + --implicit-namespaces \ + -o ./api/models/ \ + ../nwb_linkml/src/nwb_linkml/ \ + "*[!models]*" + + find ./api/models/ -type f ! -name '*models*' -delete + # fix names so they're not so dang long + find ./api/models -type f -name '*.rst' -exec gsed -i -e 's/^.*\.\(.*\) package/\1 /g' {} \; + find ./api/models -type f -name '*.rst' -exec gsed -i -e 's/^.*\.\(.*\) module/\1 /g' {} \; + + # Catch-all target: route all unknown targets to Sphinx using the new # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). %: Makefile @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + diff --git a/docs/_templates/module.rst._t b/docs/_templates/module.rst._t new file mode 100644 index 0000000..9635603 --- /dev/null +++ b/docs/_templates/module.rst._t @@ -0,0 +1,9 @@ +{%- if show_headings %} +{{- [basename, "module"] | join(' ') | e | heading }} + +{% endif -%} +.. automodule:: {{ qualname }} + :exclude-members: ConfiguredBaseModel,LinkML_Meta +{%- for option in automodule_options %} + :{{ option }}: +{%- endfor %} \ No newline at end of file diff --git a/docs/_templates/package.rst_t b/docs/_templates/package.rst_t new file mode 100644 index 0000000..48928d4 --- /dev/null +++ b/docs/_templates/package.rst_t @@ -0,0 +1,51 @@ +{%- macro automodule(modname, options) -%} +.. automodule:: {{ modname }} +{%- for option in options %} + :{{ option }}: +{%- endfor %} +{%- endmacro %} + +{%- macro toctree(docnames) -%} +.. toctree:: + :maxdepth: {{ maxdepth }} +{% for docname in docnames %} + {{ docname }} +{%- endfor %} +{%- endmacro %} + +{%- if is_namespace %} +{{- [pkgname, "namespace"] | join(" ") | e | heading }} +{% else %} +{{- [pkgname, "package"] | join(" ") | e | heading }} +{% endif %} + +{%- if is_namespace %} +.. py:module:: {{ pkgname }} +{% endif %} + +{%- if modulefirst and not is_namespace %} +{{ automodule(pkgname, automodule_options) }} +{% endif %} + +{%- if subpackages %} + +{{ toctree(subpackages) }} +{% endif %} + +{%- if submodules %} +{% if separatemodules %} +{{ toctree(submodules) }} +{% else %} +{%- for submodule in submodules %} +{% if show_headings %} +{{- [submodule, "module"] | join(" ") | e | heading(2) }} +{% endif %} +{{ automodule(submodule, automodule_options) }} +{% endfor %} +{%- endif %} +{%- endif %} + +{%- if not modulefirst and not is_namespace %} + +{{ automodule(pkgname, automodule_options) }} +{% endif %} diff --git a/docs/api/index.md b/docs/api/index.md deleted file mode 100644 index df4fc0c..0000000 --- a/docs/api/index.md +++ /dev/null @@ -1,8 +0,0 @@ -# API - -```{toctree} -:maxdepth: 2 - -nwb_linkml/index -nwb_schema_language/index -``` \ No newline at end of file diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.rst b/docs/api/models/nwb_linkml.models.pydantic.core.rst new file mode 100644 index 0000000..ad85e6a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.rst @@ -0,0 +1,22 @@ +core +======================================== + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_2_0 + nwb_linkml.models.pydantic.core.v2_2_1 + nwb_linkml.models.pydantic.core.v2_2_2 + nwb_linkml.models.pydantic.core.v2_2_4 + nwb_linkml.models.pydantic.core.v2_2_5 + nwb_linkml.models.pydantic.core.v2_3_0 + nwb_linkml.models.pydantic.core.v2_4_0 + nwb_linkml.models.pydantic.core.v2_5_0 + nwb_linkml.models.pydantic.core.v2_6_0_alpha + + +.. automodule:: nwb_linkml.models.pydantic.core + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_base.rst new file mode 100644 index 0000000..1083563 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_behavior.rst new file mode 100644 index 0000000..db3b41f --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_device.rst new file mode 100644 index 0000000..8777fc0 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ecephys.rst new file mode 100644 index 0000000..dea9b5a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_epoch.rst new file mode 100644 index 0000000..94bd51e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_file.rst new file mode 100644 index 0000000..d565748 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_icephys.rst new file mode 100644 index 0000000..c10d6d2 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_image.rst new file mode 100644 index 0000000..734922e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_language.rst new file mode 100644 index 0000000..27eb4c7 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_misc.rst new file mode 100644 index 0000000..ea220af --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ogen.rst new file mode 100644 index 0000000..26f97a4 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ophys.rst new file mode 100644 index 0000000..487acc3 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_retinotopy.rst new file mode 100644 index 0000000..7c697d8 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.namespace.rst new file mode 100644 index 0000000..3035952 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.rst new file mode 100644 index 0000000..70f072d --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_0.rst @@ -0,0 +1,27 @@ +v2\_2\_0 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_base + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_device + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_file + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_image + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_language + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_2_0.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_0 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_base.rst new file mode 100644 index 0000000..ec3976b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_behavior.rst new file mode 100644 index 0000000..f771f5a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_device.rst new file mode 100644 index 0000000..a79efd5 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ecephys.rst new file mode 100644 index 0000000..ff867af --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_epoch.rst new file mode 100644 index 0000000..ef0c9fd --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_file.rst new file mode 100644 index 0000000..97d7b4a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_icephys.rst new file mode 100644 index 0000000..54afba2 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_image.rst new file mode 100644 index 0000000..fbd1d71 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_language.rst new file mode 100644 index 0000000..5d4a3ac --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_misc.rst new file mode 100644 index 0000000..effcf6d --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ogen.rst new file mode 100644 index 0000000..204364b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ophys.rst new file mode 100644 index 0000000..2604b12 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_retinotopy.rst new file mode 100644 index 0000000..01ba104 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.namespace.rst new file mode 100644 index 0000000..931e8cf --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.rst new file mode 100644 index 0000000..581d529 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_1.rst @@ -0,0 +1,27 @@ +v2\_2\_1 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_base + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_device + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_file + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_image + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_language + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_2_1.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_1 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_base.rst new file mode 100644 index 0000000..7f7128c --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_behavior.rst new file mode 100644 index 0000000..1dd26d9 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_device.rst new file mode 100644 index 0000000..73b5a7b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ecephys.rst new file mode 100644 index 0000000..1a1e353 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_epoch.rst new file mode 100644 index 0000000..b11e456 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_file.rst new file mode 100644 index 0000000..079fe37 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_icephys.rst new file mode 100644 index 0000000..cd05d15 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_image.rst new file mode 100644 index 0000000..5bf2431 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_language.rst new file mode 100644 index 0000000..7087793 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_misc.rst new file mode 100644 index 0000000..b22d690 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ogen.rst new file mode 100644 index 0000000..2b792db --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ophys.rst new file mode 100644 index 0000000..d0f3bc9 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_retinotopy.rst new file mode 100644 index 0000000..4f497d4 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.namespace.rst new file mode 100644 index 0000000..8d815e5 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.rst new file mode 100644 index 0000000..d76d6b9 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_2.rst @@ -0,0 +1,27 @@ +v2\_2\_2 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_base + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_device + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_file + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_image + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_language + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_2_2.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_2 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_base.rst new file mode 100644 index 0000000..5ea6898 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_behavior.rst new file mode 100644 index 0000000..bac4590 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_device.rst new file mode 100644 index 0000000..fce7b1e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ecephys.rst new file mode 100644 index 0000000..c65d5ee --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_epoch.rst new file mode 100644 index 0000000..b57939d --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_file.rst new file mode 100644 index 0000000..bf2a918 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_icephys.rst new file mode 100644 index 0000000..cace579 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_image.rst new file mode 100644 index 0000000..5fb7bcc --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_language.rst new file mode 100644 index 0000000..85f77c5 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_misc.rst new file mode 100644 index 0000000..1f08ef0 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ogen.rst new file mode 100644 index 0000000..90ac2d9 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ophys.rst new file mode 100644 index 0000000..4faafa4 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_retinotopy.rst new file mode 100644 index 0000000..65e2b40 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.namespace.rst new file mode 100644 index 0000000..5010b5e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.rst new file mode 100644 index 0000000..eb41f2d --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_4.rst @@ -0,0 +1,27 @@ +v2\_2\_4 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_base + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_device + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_file + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_image + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_language + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_2_4.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_4 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_base.rst new file mode 100644 index 0000000..160543b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_behavior.rst new file mode 100644 index 0000000..2124ba9 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_device.rst new file mode 100644 index 0000000..2a1a1a4 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ecephys.rst new file mode 100644 index 0000000..8d2e1d2 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_epoch.rst new file mode 100644 index 0000000..d8ee99a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_file.rst new file mode 100644 index 0000000..f29f309 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_icephys.rst new file mode 100644 index 0000000..c4bf136 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_image.rst new file mode 100644 index 0000000..0249f2b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_language.rst new file mode 100644 index 0000000..9ddd9ee --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_misc.rst new file mode 100644 index 0000000..bc78167 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ogen.rst new file mode 100644 index 0000000..35e2cd1 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ophys.rst new file mode 100644 index 0000000..187218d --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_retinotopy.rst new file mode 100644 index 0000000..304dbc6 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.namespace.rst new file mode 100644 index 0000000..1aa4d71 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.rst new file mode 100644 index 0000000..f152c2e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_2_5.rst @@ -0,0 +1,27 @@ +v2\_2\_5 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_base + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_device + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_file + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_image + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_language + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_2_5.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_2_5 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_base.rst new file mode 100644 index 0000000..74c54a9 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_behavior.rst new file mode 100644 index 0000000..e1d2d05 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_device.rst new file mode 100644 index 0000000..fbc66df --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ecephys.rst new file mode 100644 index 0000000..aa68465 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_epoch.rst new file mode 100644 index 0000000..9445c33 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_file.rst new file mode 100644 index 0000000..d3a10ff --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_icephys.rst new file mode 100644 index 0000000..b7e1080 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_image.rst new file mode 100644 index 0000000..048bbbb --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_language.rst new file mode 100644 index 0000000..774c92c --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_misc.rst new file mode 100644 index 0000000..c5124ce --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ogen.rst new file mode 100644 index 0000000..82f5945 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ophys.rst new file mode 100644 index 0000000..0421767 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_retinotopy.rst new file mode 100644 index 0000000..7e9938e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.namespace.rst new file mode 100644 index 0000000..4e06d63 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.rst new file mode 100644 index 0000000..62cf817 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_3_0.rst @@ -0,0 +1,27 @@ +v2\_3\_0 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_base + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_device + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_file + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_image + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_language + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_3_0.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_3_0 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_base.rst new file mode 100644 index 0000000..4ef400f --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_behavior.rst new file mode 100644 index 0000000..bc44e5f --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_device.rst new file mode 100644 index 0000000..cb3bf9b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ecephys.rst new file mode 100644 index 0000000..e71b672 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_epoch.rst new file mode 100644 index 0000000..f59f9d9 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_file.rst new file mode 100644 index 0000000..6160197 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_icephys.rst new file mode 100644 index 0000000..ad2e6ab --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_image.rst new file mode 100644 index 0000000..832f245 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_language.rst new file mode 100644 index 0000000..cdfbc65 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_misc.rst new file mode 100644 index 0000000..7ec23ae --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ogen.rst new file mode 100644 index 0000000..c141615 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ophys.rst new file mode 100644 index 0000000..fc4c079 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_retinotopy.rst new file mode 100644 index 0000000..0261a49 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.namespace.rst new file mode 100644 index 0000000..f8e6581 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.rst new file mode 100644 index 0000000..2036897 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_4_0.rst @@ -0,0 +1,27 @@ +v2\_4\_0 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_base + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_device + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_file + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_image + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_language + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_4_0.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_4_0 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_base.rst new file mode 100644 index 0000000..d16e419 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_behavior.rst new file mode 100644 index 0000000..b44094d --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_device.rst new file mode 100644 index 0000000..2ef0878 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ecephys.rst new file mode 100644 index 0000000..de97b8e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_epoch.rst new file mode 100644 index 0000000..4e5de0a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_file.rst new file mode 100644 index 0000000..aff9e56 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_icephys.rst new file mode 100644 index 0000000..816b076 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +=================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_image.rst new file mode 100644 index 0000000..6392592 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_language.rst new file mode 100644 index 0000000..90f7293 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +==================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_misc.rst new file mode 100644 index 0000000..dd71a47 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ogen.rst new file mode 100644 index 0000000..ab9e58a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +================================================================ + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ophys.rst new file mode 100644 index 0000000..bfb687b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_retinotopy.rst new file mode 100644 index 0000000..d1b1b02 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +====================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.namespace.rst new file mode 100644 index 0000000..7dc23c5 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.namespace.rst @@ -0,0 +1,7 @@ +namespace +========================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.rst new file mode 100644 index 0000000..5c5fcf0 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_5_0.rst @@ -0,0 +1,27 @@ +v2\_5\_0 +================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_base + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_device + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_file + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_image + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_language + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_5_0.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_5_0 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_base.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_base.rst new file mode 100644 index 0000000..a451f61 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_base.rst @@ -0,0 +1,7 @@ +core\_nwb\_base +======================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_behavior.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_behavior.rst new file mode 100644 index 0000000..9a83119 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_behavior.rst @@ -0,0 +1,7 @@ +core\_nwb\_behavior +=========================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_behavior + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_device.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_device.rst new file mode 100644 index 0000000..dd56f0c --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_device.rst @@ -0,0 +1,7 @@ +core\_nwb\_device +========================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_device + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ecephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ecephys.rst new file mode 100644 index 0000000..fb71d84 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ecephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ecephys +========================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ecephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_epoch.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_epoch.rst new file mode 100644 index 0000000..46dcd41 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_epoch.rst @@ -0,0 +1,7 @@ +core\_nwb\_epoch +======================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_epoch + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_file.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_file.rst new file mode 100644 index 0000000..f222699 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_file.rst @@ -0,0 +1,7 @@ +core\_nwb\_file +======================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_file + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_icephys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_icephys.rst new file mode 100644 index 0000000..f2fb23f --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_icephys.rst @@ -0,0 +1,7 @@ +core\_nwb\_icephys +========================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_icephys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_image.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_image.rst new file mode 100644 index 0000000..ef81977 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_image.rst @@ -0,0 +1,7 @@ +core\_nwb\_image +======================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_image + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_language.rst new file mode 100644 index 0000000..504d8c3 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_language.rst @@ -0,0 +1,7 @@ +core\_nwb\_language +=========================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_misc.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_misc.rst new file mode 100644 index 0000000..3fbcb06 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_misc.rst @@ -0,0 +1,7 @@ +core\_nwb\_misc +======================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_misc + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ogen.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ogen.rst new file mode 100644 index 0000000..7ae4853 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ogen.rst @@ -0,0 +1,7 @@ +core\_nwb\_ogen +======================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ogen + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ophys.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ophys.rst new file mode 100644 index 0000000..0933b40 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ophys.rst @@ -0,0 +1,7 @@ +core\_nwb\_ophys +======================================================================== + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ophys + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_retinotopy.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_retinotopy.rst new file mode 100644 index 0000000..f9fc4a6 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_retinotopy.rst @@ -0,0 +1,7 @@ +core\_nwb\_retinotopy +============================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_retinotopy + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace.rst new file mode 100644 index 0000000..66fda0c --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace.rst @@ -0,0 +1,7 @@ +namespace +================================================================= + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.rst b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.rst new file mode 100644 index 0000000..38cc31d --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.core.v2_6_0_alpha.rst @@ -0,0 +1,27 @@ +v2\_6\_0\_alpha +======================================================== + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_base + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_behavior + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_device + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ecephys + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_epoch + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_file + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_icephys + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_image + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_language + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_misc + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ogen + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ophys + nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_retinotopy + nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace + + +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.rst new file mode 100644 index 0000000..c5a8596 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.rst @@ -0,0 +1,17 @@ +hdmf\_common +================================================ + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.hdmf_common.v1_1_0 + nwb_linkml.models.pydantic.hdmf_common.v1_1_2 + nwb_linkml.models.pydantic.hdmf_common.v1_1_3 + nwb_linkml.models.pydantic.hdmf_common.v1_5_0 + + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_nwb_language.rst new file mode 100644 index 0000000..90ae54a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_nwb_language.rst @@ -0,0 +1,7 @@ +hdmf\_common\_nwb\_language +==================================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_sparse.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_sparse.rst new file mode 100644 index 0000000..4cced3b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_sparse.rst @@ -0,0 +1,7 @@ +hdmf\_common\_sparse +============================================================================= + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_sparse + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_table.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_table.rst new file mode 100644 index 0000000..05baf8a --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_table.rst @@ -0,0 +1,7 @@ +hdmf\_common\_table +============================================================================ + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_table + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.namespace.rst new file mode 100644 index 0000000..f7ec680 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.namespace.rst @@ -0,0 +1,7 @@ +namespace +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_0.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.rst new file mode 100644 index 0000000..274072e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_0.rst @@ -0,0 +1,17 @@ +v1\_1\_0 +========================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_nwb_language + nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_sparse + nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_table + nwb_linkml.models.pydantic.hdmf_common.v1_1_0.namespace + + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_0 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_nwb_language.rst new file mode 100644 index 0000000..07e0878 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_nwb_language.rst @@ -0,0 +1,7 @@ +hdmf\_common\_nwb\_language +==================================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_sparse.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_sparse.rst new file mode 100644 index 0000000..d61dbff --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_sparse.rst @@ -0,0 +1,7 @@ +hdmf\_common\_sparse +============================================================================= + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_sparse + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_table.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_table.rst new file mode 100644 index 0000000..6f1234b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_table.rst @@ -0,0 +1,7 @@ +hdmf\_common\_table +============================================================================ + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_table + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.namespace.rst new file mode 100644 index 0000000..fc67ad8 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.namespace.rst @@ -0,0 +1,7 @@ +namespace +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_2.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.rst new file mode 100644 index 0000000..8b901fa --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_2.rst @@ -0,0 +1,17 @@ +v1\_1\_2 +========================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_nwb_language + nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_sparse + nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_table + nwb_linkml.models.pydantic.hdmf_common.v1_1_2.namespace + + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_2 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_nwb_language.rst new file mode 100644 index 0000000..061408f --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_nwb_language.rst @@ -0,0 +1,7 @@ +hdmf\_common\_nwb\_language +==================================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_sparse.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_sparse.rst new file mode 100644 index 0000000..d59fb42 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_sparse.rst @@ -0,0 +1,7 @@ +hdmf\_common\_sparse +============================================================================= + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_sparse + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_table.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_table.rst new file mode 100644 index 0000000..4c2f555 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_table.rst @@ -0,0 +1,7 @@ +hdmf\_common\_table +============================================================================ + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_table + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.namespace.rst new file mode 100644 index 0000000..e725bea --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.namespace.rst @@ -0,0 +1,7 @@ +namespace +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_3.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.rst new file mode 100644 index 0000000..2c7f559 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_1_3.rst @@ -0,0 +1,17 @@ +v1\_1\_3 +========================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_nwb_language + nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_sparse + nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_table + nwb_linkml.models.pydantic.hdmf_common.v1_1_3.namespace + + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_1_3 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_base.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_base.rst new file mode 100644 index 0000000..62dd31f --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_base.rst @@ -0,0 +1,7 @@ +hdmf\_common\_base +=========================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_base + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_nwb_language.rst new file mode 100644 index 0000000..1f26d91 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_nwb_language.rst @@ -0,0 +1,7 @@ +hdmf\_common\_nwb\_language +==================================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_sparse.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_sparse.rst new file mode 100644 index 0000000..980be51 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_sparse.rst @@ -0,0 +1,7 @@ +hdmf\_common\_sparse +============================================================================= + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_sparse + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_table.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_table.rst new file mode 100644 index 0000000..2845cad --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_table.rst @@ -0,0 +1,7 @@ +hdmf\_common\_table +============================================================================ + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_table + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace.rst new file mode 100644 index 0000000..49a433e --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace.rst @@ -0,0 +1,7 @@ +namespace +================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.rst new file mode 100644 index 0000000..e3d5d19 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_common.v1_5_0.rst @@ -0,0 +1,18 @@ +v1\_5\_0 +========================================================= + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_base + nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_nwb_language + nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_sparse + nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_table + nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace + + +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_5_0 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.rst new file mode 100644 index 0000000..9818fbd --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.rst @@ -0,0 +1,14 @@ +hdmf\_experimental +====================================================== + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0 + + +.. automodule:: nwb_linkml.models.pydantic.hdmf_experimental + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_experimental.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_experimental.rst new file mode 100644 index 0000000..db7dc5b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_experimental.rst @@ -0,0 +1,7 @@ +hdmf\_experimental\_experimental +=============================================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_experimental + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_nwb_language.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_nwb_language.rst new file mode 100644 index 0000000..2d5861f --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_nwb_language.rst @@ -0,0 +1,7 @@ +hdmf\_experimental\_nwb\_language +================================================================================================ + +.. automodule:: nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_nwb_language + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_resources.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_resources.rst new file mode 100644 index 0000000..1a6220b --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_resources.rst @@ -0,0 +1,7 @@ +hdmf\_experimental\_resources +============================================================================================ + +.. automodule:: nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_resources + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.namespace.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.namespace.rst new file mode 100644 index 0000000..e01bc60 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.namespace.rst @@ -0,0 +1,7 @@ +namespace +======================================================================== + +.. automodule:: nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.namespace + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.rst b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.rst new file mode 100644 index 0000000..7f23a59 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.rst @@ -0,0 +1,17 @@ +v0\_1\_0 +=============================================================== + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_experimental + nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_nwb_language + nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_resources + nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.namespace + + +.. automodule:: nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0 + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.pydantic.rst b/docs/api/models/nwb_linkml.models.pydantic.rst new file mode 100644 index 0000000..33288c8 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.pydantic.rst @@ -0,0 +1,16 @@ +pydantic +=================================== + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic.core + nwb_linkml.models.pydantic.hdmf_common + nwb_linkml.models.pydantic.hdmf_experimental + + +.. automodule:: nwb_linkml.models.pydantic + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/models/nwb_linkml.models.rst b/docs/api/models/nwb_linkml.models.rst new file mode 100644 index 0000000..5c36f54 --- /dev/null +++ b/docs/api/models/nwb_linkml.models.rst @@ -0,0 +1,14 @@ +models +========================== + + +.. toctree:: + :maxdepth: 4 + + nwb_linkml.models.pydantic + + +.. automodule:: nwb_linkml.models + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/api/nwb_linkml/index.md b/docs/api/nwb_linkml/index.md index f10eb62..540fa22 100644 --- a/docs/api/nwb_linkml/index.md +++ b/docs/api/nwb_linkml/index.md @@ -7,9 +7,8 @@ adapters/index generators/index io/index maps/index -models/index providers/index -schema +types/index config lang_elements monkeypatch diff --git a/docs/api/nwb_linkml/io/index.md b/docs/api/nwb_linkml/io/index.md index c51440e..167e194 100644 --- a/docs/api/nwb_linkml/io/index.md +++ b/docs/api/nwb_linkml/io/index.md @@ -1,7 +1,6 @@ # I/O ```{toctree} -git hdf5 schema ``` \ No newline at end of file diff --git a/docs/api/nwb_linkml/maps/index.md b/docs/api/nwb_linkml/maps/index.md index 45253b6..fda4d8b 100644 --- a/docs/api/nwb_linkml/maps/index.md +++ b/docs/api/nwb_linkml/maps/index.md @@ -3,6 +3,6 @@ ```{toctree} dtype naming -preload +postload quantity ``` \ No newline at end of file diff --git a/docs/api/nwb_linkml/maps/preload.md b/docs/api/nwb_linkml/maps/postload.md similarity index 60% rename from docs/api/nwb_linkml/maps/preload.md rename to docs/api/nwb_linkml/maps/postload.md index c69d9b1..9718711 100644 --- a/docs/api/nwb_linkml/maps/preload.md +++ b/docs/api/nwb_linkml/maps/postload.md @@ -1,7 +1,7 @@ # Preload ```{eval-rst} -.. automodule:: nwb_linkml.maps.preload +.. automodule:: nwb_linkml.maps.postload :members: :undoc-members: ``` diff --git a/docs/api/nwb_linkml/models/core.md b/docs/api/nwb_linkml/models/core.md deleted file mode 100644 index 9dd154a..0000000 --- a/docs/api/nwb_linkml/models/core.md +++ /dev/null @@ -1,8 +0,0 @@ -# NWB Core - -```{eval-rst} -.. automodule:: nwb_linkml.models.core - :members: - :undoc-members: - :imported-members: -``` \ No newline at end of file diff --git a/docs/api/nwb_linkml/models/core/index.md b/docs/api/nwb_linkml/models/core/index.md new file mode 100644 index 0000000..ac8090d --- /dev/null +++ b/docs/api/nwb_linkml/models/core/index.md @@ -0,0 +1,10 @@ +# NWB Core + +## 2.6.9 + +```{eval-rst} +.. automodule:: nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace + :members: + :undoc-members: + :imported-members: +``` \ No newline at end of file diff --git a/docs/api/nwb_linkml/models/hdmf.md b/docs/api/nwb_linkml/models/hdmf-common/index.md similarity index 50% rename from docs/api/nwb_linkml/models/hdmf.md rename to docs/api/nwb_linkml/models/hdmf-common/index.md index 3a5b1b0..db2e1b4 100644 --- a/docs/api/nwb_linkml/models/hdmf.md +++ b/docs/api/nwb_linkml/models/hdmf-common/index.md @@ -1,7 +1,9 @@ # hdmf-common +## 1.5.0 + ```{eval-rst} -.. automodule:: nwb_linkml.models.hdmf_common +.. automodule:: nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace :members: :undoc-members: :imported-members: diff --git a/docs/api/nwb_linkml/models/index.md b/docs/api/nwb_linkml/models/index.md index c7e3ac5..1ac2912 100644 --- a/docs/api/nwb_linkml/models/index.md +++ b/docs/api/nwb_linkml/models/index.md @@ -1,6 +1,6 @@ # Models ```{toctree} -core -hdmf +core/index +hdmf-common/index ``` \ No newline at end of file diff --git a/docs/api/nwb_linkml/providers/index.md b/docs/api/nwb_linkml/providers/index.md index bed90cd..506f0c7 100644 --- a/docs/api/nwb_linkml/providers/index.md +++ b/docs/api/nwb_linkml/providers/index.md @@ -1,9 +1,8 @@ # Providers -## Schema +```{toctree} +:maxdepth: 2 -```{eval-rst} -.. automodule:: nwb_linkml.providers.schema - :members: - :undoc-members: -``` +git +schema +``` \ No newline at end of file diff --git a/docs/api/nwb_linkml/types/index.md b/docs/api/nwb_linkml/types/index.md index 937ba6a..e11f1bf 100644 --- a/docs/api/nwb_linkml/types/index.md +++ b/docs/api/nwb_linkml/types/index.md @@ -2,3 +2,11 @@ Special types for nwb_linkml :) +## NDArray + +```{eval-rst} +.. automodule:: nwb_linkml.types.ndarray + :members: + :undoc-members: +``` + diff --git a/docs/conf.py b/docs/conf.py index ede0055..929540b 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -21,10 +21,12 @@ extensions = [ 'sphinx.ext.autodoc', 'sphinxcontrib.autodoc_pydantic', 'sphinx.ext.intersphinx', - 'sphinx.ext.doctest' + 'sphinx.ext.doctest', + "sphinx_design" ] templates_path = ['_templates'] +# exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', '**/models'] exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] @@ -68,7 +70,17 @@ graphviz_output_format = "svg" autodoc_pydantic_model_show_json_error_strategy = 'coerce' autodoc_pydantic_model_show_json = False -autodoc_mock_imports = ['nptyping'] +autodoc_mock_imports = [] +autoclass_content = "both" +autodoc_member_order='bysource' +add_module_names = False + +autodoc_default_options = { + 'exclude-members': 'NDArray,Shape', + +} + + # doctest doctest_global_setup = """ diff --git a/docs/index.md b/docs/index.md index 14df85f..b98a836 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,14 +1,32 @@ # nwb-linkml ```{toctree} -:caption: Contents: +:caption: Intro :maxdepth: 3 -api/index +intro/purpose +intro/nwb +intro/translation +``` + +```{toctree} +:caption: API +:maxdepth: 3 + +api/nwb_linkml/index +api/nwb_schema_language/index +api/models/nwb_linkml.models +api/nwb_linkml/schema/index +``` + +[//]: # (api/models/nwb_linkml.models) + +```{toctree} +:caption: Meta + todo changelog - - +genindex ``` diff --git a/docs/intro/index.md b/docs/intro/index.md new file mode 100644 index 0000000..aa43050 --- /dev/null +++ b/docs/intro/index.md @@ -0,0 +1,10 @@ +# Introduction + +```{toctree} +:caption: Introduction: +:maxdepth: 3 + +purpose +nwb +translation +``` \ No newline at end of file diff --git a/docs/intro/nwb.md b/docs/intro/nwb.md new file mode 100644 index 0000000..6deb0dd --- /dev/null +++ b/docs/intro/nwb.md @@ -0,0 +1 @@ +# NWB Background \ No newline at end of file diff --git a/docs/intro/purpose.md b/docs/intro/purpose.md new file mode 100644 index 0000000..d689155 --- /dev/null +++ b/docs/intro/purpose.md @@ -0,0 +1,274 @@ +# Purpose + +If [pynwb](https://pynwb.readthedocs.io/en/stable/) already exists, +why `nwb_linkml`? + +## Interoperable Schema Language + +**We want to make NWB a seed format in an interoperable, peer-to-peer +graph of research data** + +NWB is written with its own [{index}`schema language`](https://schema-language.readthedocs.io/en/latest/) +(And see [the next section](nwb) for more information). It seems to have been created +primarily because other schema languages at the time couldn't easily handle array +specifications with fine-grained control of numerical format and shape. + +The schema language is now relatively stable and does what it's designed to do, +but it being a domain-specific language rather than a general one makes it very +difficult to use NWB data alongside other formats. + +`nwb_linkml` translates NWB to [linkml](https://linkml.io/), a schema language +for declaring **{index}`Linked Data`** schema. Linked Data schema consist of +semantic triplets, rather than an object hierarchy, and can make use of +**controlled vocabularies** to reuse terms and classes from other +schemas and ontologies. + +## Storage Format Flexibility + +**We want to use NWB in lots of different ways** + +NWB as a format is designed with the intention for use with multiple +storage backends, but patterns and features of HDF5 have made their way +into the schema and the schema language, making direct translation to +other storage systems difficult. This is a problem for practical usage of +NWB data, since HDF5 files don't lend themselves to querying across many +files - eg. to find datasets that have some common piece of metadata, one +would have to download them all in full first. Having a whole hierarchy of +data in a single file is convenient in some ways, but this also makes them +difficult to share or split between computers which is a common need +when collecting data across multiple instruments and computers. + +NWB, currently, lends itself towards being an **archival** format --- where +data is converted as a last step before publishing --- rather than a +**experimental** or **computational** format that can be used as a convenient +container of heterogeneous data during collection and analysis. + +The LinkML team has also made a large number of [generators](https://linkml.io/linkml/generators/index.html) +to convert LinkML schema to different formats, including JSON Schema, GraphQL, SPARQL, +SQL/SQLAlchemy, and {mod}`~nwb_linkml.generators.pydantic`. + +Since we have to use LinkML in a somewhat nonstandard way to accommodate +NWB's arrays, references, and naming conventions, these generators won't be +immediately available for use, but with some minor modification we should +be able to get NWB out of HDF5 files and into other formats. + +## Zero-code Schema Extensions + +**We want every researcher and every tool to have their own schemas.** + +pynwb makes use of NWB Schema internally, but [schema extensions](https://pynwb.readthedocs.io/en/stable/tutorials/general/extensions.html#sphx-glr-tutorials-general-extensions-py) +require a decent amount of adjoining code to use. The underlying hdmf library +is relatively complex, and so to use a schema extension one must also +program the python classes or mappings to python class attributes +needed to use them, configuration for getter and setter methods, +i/o routines, etc. Since schema extensions are relatively hard to make, +to accomodate heterogeneous data NWB uses `DynamicTable`s, which can be +given arbitrary new columns. + +The loose coupling between schema and code has a few impacts: +- Many labs end up with their own independent software + library for converting their data into NWB +- Interoperability and meta-analysis suffer because terms are defined + ad-hoc and with little discoverability. +- Linking and versioning schema is hard, as the schema language doesn't + support it, and the code needs to be kept in-sync with the schema +- It's hard for tool-builders to implement direct export to NWB while + maintaining flexibility in their libraries + +Instead by making all models directly generated from schema, and by +making use of pydantic and other validation and metaprogramming tools, +we want to make it possible for every experiment to have its own schema +extension. We want to make experimental data part of the normal social +process of sharing results --- translation: we want to be able to +put our work in conversation with other related work! + +## Pythonic API + +**We want NWB to be as simple to use as a python dataclass.** + +We think there is room for improvement in NWB's API: + +`````{tab-set} +````{tab-item} pynwb +From the ndx-miniscope extension: + +The extension code is intended to be used like this: + +```python +from pynwb import NWBFile, NWBHDF5IO +from pynwb.image import ImageSeries +from natsort import natsorted + +from ndx_miniscope.utils import ( + add_miniscope_device, + get_starting_frames, + get_timestamps, + read_miniscope_config, + read_notes, +) + +nwbfile = NWBFile(...) + +# Load the miscroscope settings +miniscope_folder_path = "C6-J588_Disc5/15_03_28/Miniscope/" +miniscope_metadata = read_miniscope_config(folder_path=miniscope_folder_path) +# Create the Miniscope device with the microscope metadata and add it to NWB +add_miniscope_device(nwbfile=nwbfile, device_metadata=miniscope_metadata) + +# Load the behavioral camera settings +behavcam_folder_path = "C6-J588_Disc5/15_03_28/BehavCam_2/" +behavcam_metadata = read_miniscope_config(folder_path=behavcam_folder_path) +# Create the Miniscope device with the behavioral camera metadata and add it to NWB +add_miniscope_device(nwbfile=nwbfile, device_metadata=behavcam_metadata) + +save_path = os.path.join(folder_path, "test_out.nwb") +with NWBHDF5IO(save_path, "w") as io: + io.write(nwbfile) + +``` + +That uses these underlying functions to handle validation, +coercion, and add to the NWB file: + +```python +def add_miniscope_device(nwbfile: NWBFile, device_metadata: dict) -> NWBFile: + """ + Adds a Miniscope device based on provided metadata. + Can be used to add device for the microscope and the behavioral camera. + + Parameters + ---------- + nwbfile : NWBFile + The nwbfile to add the Miniscope device to. + device_metadata: dict + The metadata for the device to be added. + + Returns + ------- + NWBFile + The NWBFile passed as an input with the Miniscope added. + + """ + device_metadata_copy = deepcopy(device_metadata) + assert "name" in device_metadata_copy, "'name' is missing from metadata." + device_name = device_metadata_copy["name"] + if device_name in nwbfile.devices: + return nwbfile + + roi = device_metadata_copy.pop("ROI", None) + if roi: + device_metadata_copy.update(ROI=[roi["height"], roi["width"]]) + + device = Miniscope(**device_metadata_copy) + nwbfile.add_device(device) + + return nwbfile + +def add_miniscope_image_series( + nwbfile: NWBFile, + metadata: dict, + timestamps: np.ndarray, + image_series_index: int = 0, + external_files: Optional[List[str]] = None, + starting_frames: Optional[List[int]] = None, +) -> NWBFile: + """ + Adds an ImageSeries with a linked Miniscope device based on provided metadata. + The metadata for the device to be linked should be stored in metadata["Behavior]["Device"]. + + Parameters + ---------- + nwbfile : NWBFile + The nwbfile to add the image series to. + metadata: DeepDict + The metadata storing the necessary metadata for creating the image series and linking it to the appropriate device. + timestamps : np.ndarray + The timestamps for the behavior movie source. + image_series_index : int, optional + The metadata for ImageSeries is a list of the different image series to add. + Specify which element of the list with this parameter. + external_files : List[str], optional + List of external files associated with the ImageSeries. + starting_frames : List[int], optional + List of starting frames for each external file. + + Returns + ------- + NWBFile + The NWBFile passed as an input with the ImageSeries added. + + """ + assert "Behavior" in metadata, "The metadata for ImageSeries and Device should be stored in 'Behavior'." + assert ( + "ImageSeries" in metadata["Behavior"] + ), "The metadata for ImageSeries should be stored in metadata['Behavior']['ImageSeries']." + assert ( + "Device" in metadata["Behavior"] + ), "The metadata for Device should be stored in metadata['Behavior']['Device']." + image_series_kwargs = deepcopy(metadata["Behavior"]["ImageSeries"][image_series_index]) + image_series_name = image_series_kwargs["name"] + + if image_series_name in nwbfile.acquisition: + return nwbfile + + # Add linked device to ImageSeries + device_metadata = metadata["Behavior"]["Device"][image_series_index] + device_name = device_metadata["name"] + if device_name not in nwbfile.devices: + add_miniscope_device(nwbfile=nwbfile, device_metadata=device_metadata) + device = nwbfile.get_device(name=device_name) + image_series_kwargs.update(device=device) + + assert external_files, "'external_files' must be specified." + if starting_frames is None and len(external_files) == 1: + starting_frames = [0] + assert len(starting_frames) == len( + external_files + ), "The number of external files must match the length of 'starting_frame'." + image_series_kwargs.update( + format="external", + external_file=external_files, + starting_frame=starting_frames, + timestamps=H5DataIO(timestamps, compression=True), + ) + + image_series = ImageSeries(**image_series_kwargs) + nwbfile.add_acquisition(image_series) + +``` +```` +````{tab-item} nwb_linkml +An example of how we want `nwb_linkml` to work. + +There are no additional underlying classes or functions to be written, +since the pydantic models are directly generated from the schema extension, +and `to` and `from` methods are generic for different types of +input data (json files, videos). Tool developers can distribute +NWB schema that map 1:1 to their output formats, decreasing the need +for conversion code. + +```python +from pathlib import Path +from nwb_linkml.models.miniscope import Miniscope +from nwb_linkml.models.core import ImageSeries, NWBFile + +# Load data for miniscope and videos +miniscope = Miniscope.from_json('config.json') +videos = [] +for video_path in Path('./my_data/').glob('*.avi'): + video = ImageSeries.from_video(video_path) + video.device = miniscope + videos.append(video) + +# add to file +file = NWBFile.from_hdf('my_data.nwb') +file.devices['my_miniscope'] = miniscope +file.acquisition['my_videos'] = videos +file.save() +``` + +```` + + + +````` diff --git a/docs/intro/translation.md b/docs/intro/translation.md new file mode 100644 index 0000000..5cf72a0 --- /dev/null +++ b/docs/intro/translation.md @@ -0,0 +1 @@ +# Translation Strategy \ No newline at end of file diff --git a/nwb_linkml/src/nwb_linkml/adapters/group.py b/nwb_linkml/src/nwb_linkml/adapters/group.py index a82d703..5ad46ed 100644 --- a/nwb_linkml/src/nwb_linkml/adapters/group.py +++ b/nwb_linkml/src/nwb_linkml/adapters/group.py @@ -51,14 +51,17 @@ class GroupAdapter(ClassAdapter): have any number of the objects that are of `neurodata_type_inc` class Examples: - - name: templates - groups: - - neurodata_type_inc: TimeSeries - doc: TimeSeries objects containing template data of presented stimuli. - quantity: '*' - - neurodata_type_inc: Images - doc: Images objects containing images of presented stimuli. - quantity: '*' + + .. code-block:: yaml + + - name: templates + groups: + - neurodata_type_inc: TimeSeries + doc: TimeSeries objects containing template data of presented stimuli. + quantity: '*' + - neurodata_type_inc: Images + doc: Images objects containing images of presented stimuli. + quantity: '*' Args: children (List[:class:`.Group`]): Child groups diff --git a/nwb_linkml/src/nwb_linkml/generators/pydantic.py b/nwb_linkml/src/nwb_linkml/generators/pydantic.py index def7eed..245af71 100644 --- a/nwb_linkml/src/nwb_linkml/generators/pydantic.py +++ b/nwb_linkml/src/nwb_linkml/generators/pydantic.py @@ -9,7 +9,8 @@ The default `__main__` method - Instantiates the class - Calls :meth:`~linkml.generators.PydanticGenerator.serialize` -The `serialize` method +The `serialize` method: + - Accepts an optional jinja-style template, otherwise it uses the default template - Uses :class:`linkml_runtime.utils.schemaview.SchemaView` to interact with the schema - Generates linkML Classes diff --git a/nwb_linkml/src/nwb_linkml/types/ndarray.py b/nwb_linkml/src/nwb_linkml/types/ndarray.py index 2477b6c..825b354 100644 --- a/nwb_linkml/src/nwb_linkml/types/ndarray.py +++ b/nwb_linkml/src/nwb_linkml/types/ndarray.py @@ -9,6 +9,7 @@ from pathlib import Path from typing import ( Any, Callable, + Tuple ) import sys from copy import copy @@ -28,23 +29,30 @@ from dask.array.core import Array as DaskArray import blosc2 from nptyping import NDArray as _NDArray -from nptyping.ndarray import NDArrayMeta +from nptyping.ndarray import NDArrayMeta as _NDArrayMeta from nptyping import Shape, Number +from nptyping.nptyping_type import NPTypingType from nptyping.shape_expression import check_shape from nwb_linkml.maps.dtype import np_to_python, allowed_precisions +class NDArrayMeta(_NDArrayMeta, implementation="NDArray"): + """ + Kept here to allow for hooking into metaclass, which has + been necessary on and off as we work this class into a stable + state""" -class NDArray(_NDArray): +class NDArray(NPTypingType, metaclass=NDArrayMeta): """ Following the example here: https://docs.pydantic.dev/latest/usage/types/custom/#handling-third-party-types """ + __args__ = (Any, Any) @classmethod def __get_pydantic_core_schema__( cls, - _source_type: _NDArray, + _source_type: 'NDArray', _handler: Callable[[Any], core_schema.CoreSchema], ) -> core_schema.CoreSchema: diff --git a/poetry.lock b/poetry.lock index 042d007..0683324 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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