diff --git a/nwb_linkml/pdm.lock b/nwb_linkml/pdm.lock
index 5ed71bf..d81da1e 100644
--- a/nwb_linkml/pdm.lock
+++ b/nwb_linkml/pdm.lock
@@ -2,17 +2,23 @@
 # It is not intended for manual editing.
 
 [metadata]
-groups = ["default", "dev", "tests"]
-strategy = ["cross_platform", "inherit_metadata"]
-lock_version = "4.4.2"
-content_hash = "sha256:d5877e87ce194e1cd8d62d8e935e39941e0c8f78667e0240ff64690f848d4a6c"
+groups = ["default", "dev", "plot", "tests"]
+strategy = ["inherit_metadata"]
+lock_version = "4.5.0"
+content_hash = "sha256:6b84e75b424a643bdfbc4cb0d775e6db831b27c7a770097e28dc8eb8bf76b54d"
+
+[[metadata.targets]]
+requires_python = ">=3.10,<3.13"
 
 [[package]]
 name = "annotated-types"
 version = "0.7.0"
 requires_python = ">=3.8"
 summary = "Reusable constraint types to use with typing.Annotated"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
+dependencies = [
+    "typing-extensions>=4.0.0; python_version < \"3.9\"",
+]
 files = [
     {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
     {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
@@ -22,7 +28,10 @@ files = [
 name = "antlr4-python3-runtime"
 version = "4.9.3"
 summary = "ANTLR 4.9.3 runtime for Python 3.7"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
+dependencies = [
+    "typing; python_version < \"3.5\"",
+]
 files = [
     {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
 ]
@@ -32,7 +41,7 @@ name = "arrow"
 version = "1.3.0"
 requires_python = ">=3.8"
 summary = "Better dates & times for Python"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "python-dateutil>=2.7.0",
     "types-python-dateutil>=2.8.10",
@@ -44,21 +53,24 @@ files = [
 
 [[package]]
 name = "attrs"
-version = "23.2.0"
+version = "24.1.0"
 requires_python = ">=3.7"
 summary = "Classes Without Boilerplate"
 groups = ["default", "dev", "tests"]
+dependencies = [
+    "importlib-metadata; python_version < \"3.8\"",
+]
 files = [
-    {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
-    {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
+    {file = "attrs-24.1.0-py3-none-any.whl", hash = "sha256:377b47448cb61fea38533f671fba0d0f8a96fd58facd4dc518e3dac9dbea0905"},
+    {file = "attrs-24.1.0.tar.gz", hash = "sha256:adbdec84af72d38be7628e353a09b6a6790d15cd71819f6e9d7b0faa8a125745"},
 ]
 
 [[package]]
 name = "black"
-version = "24.4.2"
+version = "24.8.0"
 requires_python = ">=3.8"
 summary = "The uncompromising code formatter."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev"]
 dependencies = [
     "click>=8.0.0",
     "mypy-extensions>=0.4.3",
@@ -69,20 +81,20 @@ dependencies = [
     "typing-extensions>=4.0.1; python_version < \"3.11\"",
 ]
 files = [
-    {file = "black-24.4.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:dd1b5a14e417189db4c7b64a6540f31730713d173f0b63e55fabd52d61d8fdce"},
-    {file = "black-24.4.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8e537d281831ad0e71007dcdcbe50a71470b978c453fa41ce77186bbe0ed6021"},
-    {file = "black-24.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:eaea3008c281f1038edb473c1aa8ed8143a5535ff18f978a318f10302b254063"},
-    {file = "black-24.4.2-cp310-cp310-win_amd64.whl", hash = "sha256:7768a0dbf16a39aa5e9a3ded568bb545c8c2727396d063bbaf847df05b08cd96"},
-    {file = "black-24.4.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:257d724c2c9b1660f353b36c802ccece186a30accc7742c176d29c146df6e474"},
-    {file = "black-24.4.2-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:bdde6f877a18f24844e381d45e9947a49e97933573ac9d4345399be37621e26c"},
-    {file = "black-24.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e151054aa00bad1f4e1f04919542885f89f5f7d086b8a59e5000e6c616896ffb"},
-    {file = "black-24.4.2-cp311-cp311-win_amd64.whl", hash = "sha256:7e122b1c4fb252fd85df3ca93578732b4749d9be076593076ef4d07a0233c3e1"},
-    {file = "black-24.4.2-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:accf49e151c8ed2c0cdc528691838afd217c50412534e876a19270fea1e28e2d"},
-    {file = "black-24.4.2-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:88c57dc656038f1ab9f92b3eb5335ee9b021412feaa46330d5eba4e51fe49b04"},
-    {file = "black-24.4.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:be8bef99eb46d5021bf053114442914baeb3649a89dc5f3a555c88737e5e98fc"},
-    {file = "black-24.4.2-cp312-cp312-win_amd64.whl", hash = "sha256:415e686e87dbbe6f4cd5ef0fbf764af7b89f9057b97c908742b6008cc554b9c0"},
-    {file = "black-24.4.2-py3-none-any.whl", hash = "sha256:d36ed1124bb81b32f8614555b34cc4259c3fbc7eec17870e8ff8ded335b58d8c"},
-    {file = "black-24.4.2.tar.gz", hash = "sha256:c872b53057f000085da66a19c55d68f6f8ddcac2642392ad3a355878406fbd4d"},
+    {file = "black-24.8.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:09cdeb74d494ec023ded657f7092ba518e8cf78fa8386155e4a03fdcc44679e6"},
+    {file = "black-24.8.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:81c6742da39f33b08e791da38410f32e27d632260e599df7245cccee2064afeb"},
+    {file = "black-24.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:707a1ca89221bc8a1a64fb5e15ef39cd755633daa672a9db7498d1c19de66a42"},
+    {file = "black-24.8.0-cp310-cp310-win_amd64.whl", hash = "sha256:d6417535d99c37cee4091a2f24eb2b6d5ec42b144d50f1f2e436d9fe1916fe1a"},
+    {file = "black-24.8.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:fb6e2c0b86bbd43dee042e48059c9ad7830abd5c94b0bc518c0eeec57c3eddc1"},
+    {file = "black-24.8.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:837fd281f1908d0076844bc2b801ad2d369c78c45cf800cad7b61686051041af"},
+    {file = "black-24.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:62e8730977f0b77998029da7971fa896ceefa2c4c4933fcd593fa599ecbf97a4"},
+    {file = "black-24.8.0-cp311-cp311-win_amd64.whl", hash = "sha256:72901b4913cbac8972ad911dc4098d5753704d1f3c56e44ae8dce99eecb0e3af"},
+    {file = "black-24.8.0-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:7c046c1d1eeb7aea9335da62472481d3bbf3fd986e093cffd35f4385c94ae368"},
+    {file = "black-24.8.0-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:649f6d84ccbae73ab767e206772cc2d7a393a001070a4c814a546afd0d423aed"},
+    {file = "black-24.8.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:2b59b250fdba5f9a9cd9d0ece6e6d993d91ce877d121d161e4698af3eb9c1018"},
+    {file = "black-24.8.0-cp312-cp312-win_amd64.whl", hash = "sha256:6e55d30d44bed36593c3163b9bc63bf58b3b30e4611e4d88a0c3c239930ed5b2"},
+    {file = "black-24.8.0-py3-none-any.whl", hash = "sha256:972085c618ee94f402da1af548a4f218c754ea7e5dc70acb168bfaca4c2542ed"},
+    {file = "black-24.8.0.tar.gz", hash = "sha256:2500945420b6784c38b9ee885af039f5e7471ef284ab03fa35ecdde4688cd83f"},
 ]
 
 [[package]]
@@ -90,7 +102,7 @@ name = "blinker"
 version = "1.8.2"
 requires_python = ">=3.8"
 summary = "Fast, simple object-to-object and broadcast signaling"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 files = [
     {file = "blinker-1.8.2-py3-none-any.whl", hash = "sha256:1779309f71bf239144b9399d06ae925637cf6634cf6bd131104184531bf67c01"},
     {file = "blinker-1.8.2.tar.gz", hash = "sha256:8f77b09d3bf7c795e969e9486f39c2c5e9c39d4ee07424be2bc594ece9642d83"},
@@ -117,7 +129,7 @@ name = "certifi"
 version = "2024.7.4"
 requires_python = ">=3.6"
 summary = "Python package for providing Mozilla's CA Bundle."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"},
     {file = "certifi-2024.7.4.tar.gz", hash = "sha256:5a1e7645bc0ec61a09e26c36f6106dd4cf40c6db3a1fb6352b0244e7fb057c7b"},
@@ -127,7 +139,7 @@ files = [
 name = "cfgraph"
 version = "0.2.1"
 summary = "rdflib collections flattening graph"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "rdflib>=0.4.2",
 ]
@@ -140,7 +152,7 @@ name = "chardet"
 version = "5.2.0"
 requires_python = ">=3.7"
 summary = "Universal encoding detector for Python 3"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
     {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
@@ -151,7 +163,7 @@ name = "charset-normalizer"
 version = "3.3.2"
 requires_python = ">=3.7.0"
 summary = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"},
     {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:25baf083bf6f6b341f4121c2f3c548875ee6f5339300e08be3f2b2ba1721cdd3"},
@@ -207,9 +219,10 @@ name = "click"
 version = "8.1.7"
 requires_python = ">=3.7"
 summary = "Composable command line interface toolkit"
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 dependencies = [
     "colorama; platform_system == \"Windows\"",
+    "importlib-metadata; python_version < \"3.8\"",
 ]
 files = [
     {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
@@ -221,7 +234,7 @@ name = "cloudpickle"
 version = "3.0.0"
 requires_python = ">=3.8"
 summary = "Pickler class to extend the standard pickle.Pickler functionality"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "cloudpickle-3.0.0-py3-none-any.whl", hash = "sha256:246ee7d0c295602a036e86369c77fecda4ab17b506496730f2f576d9016fd9c7"},
     {file = "cloudpickle-3.0.0.tar.gz", hash = "sha256:996d9a482c6fb4f33c1a35335cf8afd065d2a56e973270364840712d9131a882"},
@@ -232,7 +245,7 @@ name = "colorama"
 version = "0.4.6"
 requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 summary = "Cross-platform colored terminal text."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
@@ -264,7 +277,6 @@ files = [
     {file = "coverage-6.5.0-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:cca4435eebea7962a52bdb216dec27215d0df64cf27fc1dd538415f5d2b9da6b"},
     {file = "coverage-6.5.0-cp311-cp311-win32.whl", hash = "sha256:98e8a10b7a314f454d9eff4216a9a94d143a7ee65018dd12442e898ee2310578"},
     {file = "coverage-6.5.0-cp311-cp311-win_amd64.whl", hash = "sha256:bc8ef5e043a2af066fa8cbfc6e708d58017024dc4345a1f9757b329a249f041b"},
-    {file = "coverage-6.5.0-pp36.pp37.pp38-none-any.whl", hash = "sha256:1431986dac3923c5945271f169f59c45b8802a114c8f548d611f2015133df77a"},
     {file = "coverage-6.5.0.tar.gz", hash = "sha256:f642e90754ee3e06b0e7e51bce3379590e76b7f76b708e1a71ff043f87025c84"},
 ]
 
@@ -299,7 +311,6 @@ files = [
     {file = "coverage-6.5.0-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:cca4435eebea7962a52bdb216dec27215d0df64cf27fc1dd538415f5d2b9da6b"},
     {file = "coverage-6.5.0-cp311-cp311-win32.whl", hash = "sha256:98e8a10b7a314f454d9eff4216a9a94d143a7ee65018dd12442e898ee2310578"},
     {file = "coverage-6.5.0-cp311-cp311-win_amd64.whl", hash = "sha256:bc8ef5e043a2af066fa8cbfc6e708d58017024dc4345a1f9757b329a249f041b"},
-    {file = "coverage-6.5.0-pp36.pp37.pp38-none-any.whl", hash = "sha256:1431986dac3923c5945271f169f59c45b8802a114c8f548d611f2015133df77a"},
     {file = "coverage-6.5.0.tar.gz", hash = "sha256:f642e90754ee3e06b0e7e51bce3379590e76b7f76b708e1a71ff043f87025c84"},
 ]
 
@@ -324,7 +335,7 @@ name = "curies"
 version = "0.7.10"
 requires_python = ">=3.8"
 summary = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "pydantic",
     "pytrie",
@@ -340,7 +351,7 @@ name = "dash"
 version = "2.17.1"
 requires_python = ">=3.8"
 summary = "A Python framework for building reactive web-apps. Developed by Plotly."
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 dependencies = [
     "Flask<3.1,>=1.0.4",
     "Werkzeug<3.1",
@@ -364,7 +375,7 @@ files = [
 name = "dash-core-components"
 version = "2.0.0"
 summary = "Core component suite for Dash"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 files = [
     {file = "dash_core_components-2.0.0-py3-none-any.whl", hash = "sha256:52b8e8cce13b18d0802ee3acbc5e888cb1248a04968f962d63d070400af2e346"},
     {file = "dash_core_components-2.0.0.tar.gz", hash = "sha256:c6733874af975e552f95a1398a16c2ee7df14ce43fa60bb3718a3c6e0b63ffee"},
@@ -374,7 +385,7 @@ files = [
 name = "dash-cytoscape"
 version = "0.3.0"
 summary = "A Component Library for Dash aimed at facilitating network visualization in Python, wrapped around Cytoscape.js"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 dependencies = [
     "dash",
 ]
@@ -387,7 +398,7 @@ files = [
 name = "dash-html-components"
 version = "2.0.0"
 summary = "Vanilla HTML components for Dash"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 files = [
     {file = "dash_html_components-2.0.0-py3-none-any.whl", hash = "sha256:b42cc903713c9706af03b3f2548bda4be7307a7cf89b7d6eae3da872717d1b63"},
     {file = "dash_html_components-2.0.0.tar.gz", hash = "sha256:8703a601080f02619a6390998e0b3da4a5daabe97a1fd7a9cebc09d015f26e50"},
@@ -397,7 +408,7 @@ files = [
 name = "dash-table"
 version = "5.0.0"
 summary = "Dash table"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 files = [
     {file = "dash_table-5.0.0-py3-none-any.whl", hash = "sha256:19036fa352bb1c11baf38068ec62d172f0515f73ca3276c79dee49b95ddc16c9"},
     {file = "dash_table-5.0.0.tar.gz", hash = "sha256:18624d693d4c8ef2ddec99a6f167593437a7ea0bf153aa20f318c170c5bc7308"},
@@ -408,7 +419,7 @@ name = "dask"
 version = "2024.7.1"
 requires_python = ">=3.9"
 summary = "Parallel PyData with Task Scheduling"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "click>=8.1",
     "cloudpickle>=1.5.0",
@@ -429,7 +440,7 @@ name = "deprecated"
 version = "1.2.14"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 summary = "Python @deprecated decorator to deprecate old python classes, functions or methods."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "wrapt<2,>=1.10",
 ]
@@ -452,7 +463,7 @@ name = "et-xmlfile"
 version = "1.1.0"
 requires_python = ">=3.6"
 summary = "An implementation of lxml.xmlfile for the standard library"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "et_xmlfile-1.1.0-py3-none-any.whl", hash = "sha256:a2ba85d1d6a74ef63837eed693bcb89c3f752169b0e3e7ae5b16ca5e1b3deada"},
     {file = "et_xmlfile-1.1.0.tar.gz", hash = "sha256:8eb9e2bc2f8c97e37a2dc85a09ecdcdec9d8a396530a6d5a33b30b9a92da0c5c"},
@@ -475,12 +486,13 @@ name = "flask"
 version = "3.0.3"
 requires_python = ">=3.8"
 summary = "A simple framework for building complex web applications."
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 dependencies = [
     "Jinja2>=3.1.2",
     "Werkzeug>=3.0.0",
     "blinker>=1.6.2",
     "click>=8.1.3",
+    "importlib-metadata>=3.6.0; python_version < \"3.10\"",
     "itsdangerous>=2.1.2",
 ]
 files = [
@@ -493,7 +505,10 @@ name = "fqdn"
 version = "1.5.1"
 requires_python = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 summary = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
+dependencies = [
+    "cached-property>=1.3.0; python_version < \"3.8\"",
+]
 files = [
     {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"},
     {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"},
@@ -504,7 +519,7 @@ name = "fsspec"
 version = "2024.6.1"
 requires_python = ">=3.8"
 summary = "File-system specification"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "fsspec-2024.6.1-py3-none-any.whl", hash = "sha256:3cb443f8bcd2efb31295a5b9fdb02aee81d8452c80d28f97a6d0959e6cee101e"},
     {file = "fsspec-2024.6.1.tar.gz", hash = "sha256:fad7d7e209dd4c1208e3bbfda706620e0da5142bebbd9c384afb95b07e798e49"},
@@ -516,6 +531,9 @@ version = "1.2.0"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 summary = "A backport of fstrings to python<3.6"
 groups = ["dev", "tests"]
+dependencies = [
+    "tokenize-rt>=3; python_version < \"3.6\"",
+]
 files = [
     {file = "future_fstrings-1.2.0-py2.py3-none-any.whl", hash = "sha256:90e49598b553d8746c4dc7d9442e0359d038c3039d802c91c0a55505da318c63"},
     {file = "future_fstrings-1.2.0.tar.gz", hash = "sha256:6cf41cbe97c398ab5a81168ce0dbb8ad95862d3caf23c21e4430627b90844089"},
@@ -537,7 +555,7 @@ name = "graphviz"
 version = "0.20.3"
 requires_python = ">=3.8"
 summary = "Simple Python interface for Graphviz"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "graphviz-0.20.3-py3-none-any.whl", hash = "sha256:81f848f2904515d8cd359cc611faba817598d2feaac4027b266aa3eda7b3dde5"},
     {file = "graphviz-0.20.3.zip", hash = "sha256:09d6bc81e6a9fa392e7ba52135a9d49f1ed62526f96499325930e87ca1b5925d"},
@@ -548,7 +566,7 @@ name = "greenlet"
 version = "3.0.3"
 requires_python = ">=3.7"
 summary = "Lightweight in-process concurrent programming"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 marker = "(platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\") and python_version < \"3.13\""
 files = [
     {file = "greenlet-3.0.3-cp310-cp310-macosx_11_0_universal2.whl", hash = "sha256:9da2bd29ed9e4f15955dd1595ad7bc9320308a3b766ef7f837e23ad4b4aac31a"},
@@ -586,7 +604,7 @@ name = "h5py"
 version = "3.11.0"
 requires_python = ">=3.8"
 summary = "Read and write HDF5 files from Python"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "numpy>=1.17.3",
 ]
@@ -611,7 +629,7 @@ name = "hbreader"
 version = "0.9.1"
 requires_python = ">=3.7"
 summary = "Honey Badger reader - a generic file/url/string open and read tool"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "hbreader-0.9.1-py3-none-any.whl", hash = "sha256:9a6e76c9d1afc1b977374a5dc430a1ebb0ea0488205546d4678d6e31cc5f6801"},
     {file = "hbreader-0.9.1.tar.gz", hash = "sha256:d2c132f8ba6276d794c66224c3297cec25c8079d0a4cf019c061611e0a3b94fa"},
@@ -622,7 +640,7 @@ name = "idna"
 version = "3.7"
 requires_python = ">=3.5"
 summary = "Internationalized Domain Names in Applications (IDNA)"
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"},
     {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"},
@@ -633,8 +651,9 @@ name = "importlib-metadata"
 version = "8.2.0"
 requires_python = ">=3.8"
 summary = "Read metadata from Python packages"
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 dependencies = [
+    "typing-extensions>=3.6.4; python_version < \"3.8\"",
     "zipp>=0.5",
 ]
 files = [
@@ -657,7 +676,7 @@ files = [
 name = "isodate"
 version = "0.6.1"
 summary = "An ISO 8601 date/time/duration parser and formatter"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "six",
 ]
@@ -671,7 +690,7 @@ name = "isoduration"
 version = "20.11.0"
 requires_python = ">=3.7"
 summary = "Operations with ISO 8601 durations"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "arrow>=0.15.0",
 ]
@@ -685,7 +704,7 @@ name = "itsdangerous"
 version = "2.2.0"
 requires_python = ">=3.8"
 summary = "Safely pass data to untrusted environments and back."
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 files = [
     {file = "itsdangerous-2.2.0-py3-none-any.whl", hash = "sha256:c6242fc49e35958c8b15141343aa660db5fc54d4f13a1db01a3f5891b98700ef"},
     {file = "itsdangerous-2.2.0.tar.gz", hash = "sha256:e0050c0b7da1eea53ffaf149c0cfbb5c6e2e2b69c4bef22c81fa6eb73e5f6173"},
@@ -696,7 +715,7 @@ name = "jinja2"
 version = "3.1.4"
 requires_python = ">=3.7"
 summary = "A very fast and expressive template engine."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 dependencies = [
     "MarkupSafe>=2.0",
 ]
@@ -710,7 +729,7 @@ name = "json-flattener"
 version = "0.1.9"
 requires_python = ">=3.7.0"
 summary = "Python library for denormalizing nested dicts or json objects to tables and back"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "click",
     "pyyaml",
@@ -724,7 +743,7 @@ files = [
 name = "jsonasobj"
 version = "1.3.1"
 summary = "JSON as python objects"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "jsonasobj-1.3.1-py3-none-any.whl", hash = "sha256:b9e329dc1ceaae7cf5d5b214684a0b100e0dad0be6d5bbabac281ec35ddeca65"},
     {file = "jsonasobj-1.3.1.tar.gz", hash = "sha256:d52e0544a54a08f6ea3f77fa3387271e3648655e0eace2f21e825c26370e44a2"},
@@ -735,7 +754,7 @@ name = "jsonasobj2"
 version = "1.0.4"
 requires_python = ">=3.6"
 summary = "JSON as python objects - version 2"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "hbreader",
 ]
@@ -749,7 +768,7 @@ name = "jsonpatch"
 version = "1.33"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
 summary = "Apply JSON-Patches (RFC 6902) "
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "jsonpointer>=1.9",
 ]
@@ -762,7 +781,7 @@ files = [
 name = "jsonpath-ng"
 version = "1.6.1"
 summary = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "ply",
 ]
@@ -776,7 +795,7 @@ name = "jsonpointer"
 version = "3.0.0"
 requires_python = ">=3.7"
 summary = "Identify specific nodes in a JSON document (RFC 6901) "
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"},
     {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"},
@@ -787,10 +806,12 @@ name = "jsonschema"
 version = "4.23.0"
 requires_python = ">=3.8"
 summary = "An implementation of JSON Schema validation for Python"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "attrs>=22.2.0",
+    "importlib-resources>=1.4.0; python_version < \"3.9\"",
     "jsonschema-specifications>=2023.03.6",
+    "pkgutil-resolve-name>=1.3.10; python_version < \"3.9\"",
     "referencing>=0.28.4",
     "rpds-py>=0.7.1",
 ]
@@ -804,8 +825,9 @@ name = "jsonschema-specifications"
 version = "2023.12.1"
 requires_python = ">=3.8"
 summary = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
+    "importlib-resources>=1.4.0; python_version < \"3.9\"",
     "referencing>=0.31.0",
 ]
 files = [
@@ -819,7 +841,7 @@ version = "4.23.0"
 extras = ["format"]
 requires_python = ">=3.8"
 summary = "An implementation of JSON Schema validation for Python"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "fqdn",
     "idna",
@@ -844,7 +866,7 @@ git = "https://github.com/sneakers-the-rat/linkml"
 ref = "nwb-linkml"
 revision = "0a6578bff4713688260f64b3076b197bd6decce9"
 summary = "Linked Open Data Modeling Language"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "antlr4-python3-runtime<4.10,==4.*,>=4.9.0",
     "click>=7.0",
@@ -869,6 +891,7 @@ dependencies = [
     "rdflib>=6.0.0",
     "requests>=2.22",
     "sqlalchemy>=1.4.31",
+    "typing-extensions>=4.4.0; python_version < \"3.9\"",
     "watchdog>=0.9.0",
 ]
 
@@ -877,7 +900,7 @@ name = "linkml-dataops"
 version = "0.1.0"
 requires_python = ">=3.7"
 summary = "LinkML Data Operations API"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "jinja2",
     "jsonpatch",
@@ -895,7 +918,7 @@ name = "linkml-runtime"
 version = "1.8.0"
 requires_python = "<4.0,>=3.8"
 summary = "Runtime environment for LinkML, the Linked open data modeling language"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "click",
     "curies>=0.5.4",
@@ -921,7 +944,7 @@ name = "locket"
 version = "1.0.0"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 summary = "File-based locks for Python on Linux and Windows"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "locket-1.0.0-py2.py3-none-any.whl", hash = "sha256:b6c819a722f7b6bd955b80781788e4a66a55628b858d347536b7e81325a3a5e3"},
     {file = "locket-1.0.0.tar.gz", hash = "sha256:5c0d4c052a8bbbf750e056a8e65ccd309086f4f0f18a2eac306a8dfa4112a632"},
@@ -932,7 +955,7 @@ name = "markdown-it-py"
 version = "3.0.0"
 requires_python = ">=3.8"
 summary = "Python port of markdown-it. Markdown parsing, done right!"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "mdurl~=0.1",
 ]
@@ -946,7 +969,7 @@ name = "markupsafe"
 version = "2.1.5"
 requires_python = ">=3.7"
 summary = "Safely add untrusted strings to HTML/XML markup."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a17a92de5231666cfbe003f0e4b9b3a7ae3afb1ec2845aadc2bacc93ff85febc"},
     {file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:72b6be590cc35924b02c78ef34b467da4ba07e4e0f0454a2c5907f473fc50ce5"},
@@ -986,7 +1009,7 @@ name = "mdurl"
 version = "0.1.2"
 requires_python = ">=3.7"
 summary = "Markdown URL utilities"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
@@ -997,7 +1020,7 @@ name = "mypy-extensions"
 version = "1.0.0"
 requires_python = ">=3.5"
 summary = "Type system extensions for programs checked with the mypy type checker."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev"]
 files = [
     {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
     {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
@@ -1008,7 +1031,7 @@ name = "nest-asyncio"
 version = "1.6.0"
 requires_python = ">=3.5"
 summary = "Patch asyncio to allow nested event loops"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 files = [
     {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"},
     {file = "nest_asyncio-1.6.0.tar.gz", hash = "sha256:6f172d5449aca15afd6c646851f4e31e02c598d553a667e38cafa997cfec55fe"},
@@ -1030,9 +1053,11 @@ name = "nptyping"
 version = "2.5.0"
 requires_python = ">=3.7"
 summary = "Type hints for NumPy."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "numpy<2.0.0,>=1.20.0; python_version >= \"3.8\"",
+    "numpy==1.21.5; python_version < \"3.8\"",
+    "typing-extensions<5.0.0,>=4.0.0; python_version < \"3.10\"",
 ]
 files = [
     {file = "nptyping-2.5.0-py3-none-any.whl", hash = "sha256:764e51836faae33a7ae2e928af574cfb701355647accadcc89f2ad793630b7c8"},
@@ -1044,7 +1069,7 @@ name = "numpy"
 version = "1.26.4"
 requires_python = ">=3.9"
 summary = "Fundamental package for array computing in Python"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "numpy-1.26.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9ff0f4f29c51e2803569d7a51c2304de5554655a60c5d776e35b4a41413830d0"},
     {file = "numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e4ee3380d6de9c9ec04745830fd9e2eccb3e6cf790d39d7b98ffd19b0dd754a"},
@@ -1070,26 +1095,23 @@ files = [
     {file = "numpy-1.26.4-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:1dda2e7b4ec9dd512f84935c5f126c8bd8b9f2fc001e9f54af255e8c5f16b0e0"},
     {file = "numpy-1.26.4-cp312-cp312-win32.whl", hash = "sha256:50193e430acfc1346175fcbdaa28ffec49947a06918b7b92130744e81e640110"},
     {file = "numpy-1.26.4-cp312-cp312-win_amd64.whl", hash = "sha256:08beddf13648eb95f8d867350f6a018a4be2e5ad54c8d8caed89ebca558b2818"},
-    {file = "numpy-1.26.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:afedb719a9dcfc7eaf2287b839d8198e06dcd4cb5d276a3df279231138e83d30"},
-    {file = "numpy-1.26.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:95a7476c59002f2f6c590b9b7b998306fba6a5aa646b1e22ddfeaf8f78c3a29c"},
-    {file = "numpy-1.26.4-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:7e50d0a0cc3189f9cb0aeb3a6a6af18c16f59f004b866cd2be1c14b36134a4a0"},
     {file = "numpy-1.26.4.tar.gz", hash = "sha256:2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010"},
 ]
 
 [[package]]
 name = "numpydantic"
-version = "1.2.2"
+version = "1.3.0"
 requires_python = "<4.0,>=3.9"
 summary = "Type and shape validation and serialization for numpy arrays in pydantic models"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
-    "nptyping>=2.5.0",
     "numpy>=1.24.0",
     "pydantic>=2.3.0",
+    "typing-extensions>=4.11.0; python_version < \"3.11\"",
 ]
 files = [
-    {file = "numpydantic-1.2.2-py3-none-any.whl", hash = "sha256:05481d7dbb202b6e31a97d77fa9d650b57766f996981076844572c7ddeff1a0b"},
-    {file = "numpydantic-1.2.2.tar.gz", hash = "sha256:4e81c1d162b7a8bbec52c69011e745488bd452b017375d7df8f1de8ce96705a1"},
+    {file = "numpydantic-1.3.0-py3-none-any.whl", hash = "sha256:bda3aa2cd858e9211006be8b8e589e1905b2c6a2db17cec0c28563ba1ad66b68"},
+    {file = "numpydantic-1.3.0.tar.gz", hash = "sha256:b3931d51ba7e22d48bdd2ae56cad368f63db99ef74e8570021a7fd176b2ffc1f"},
 ]
 
 [[package]]
@@ -1097,7 +1119,7 @@ name = "nwb-schema-language"
 version = "0.1.3"
 requires_python = ">=3.9,<4.0"
 summary = "Translation of the nwb-schema-language to LinkML"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "linkml-runtime<2.0.0,>=1.1.24",
     "pydantic<3.0.0,>=2.3.0",
@@ -1112,7 +1134,7 @@ name = "openpyxl"
 version = "3.1.5"
 requires_python = ">=3.8"
 summary = "A Python library to read/write Excel 2010 xlsx/xlsm files"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "et-xmlfile",
 ]
@@ -1126,7 +1148,7 @@ name = "packaging"
 version = "24.1"
 requires_python = ">=3.8"
 summary = "Core utilities for Python packages"
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
     {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
@@ -1137,7 +1159,7 @@ name = "pandas"
 version = "2.2.2"
 requires_python = ">=3.9"
 summary = "Powerful data structures for data analysis, time series, and statistics"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "numpy>=1.22.4; python_version < \"3.11\"",
     "numpy>=1.23.2; python_version == \"3.11\"",
@@ -1175,7 +1197,7 @@ files = [
 name = "parse"
 version = "1.20.2"
 summary = "parse() is the opposite of format()"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "parse-1.20.2-py2.py3-none-any.whl", hash = "sha256:967095588cb802add9177d0c0b6133b5ba33b1ea9007ca800e526f42a85af558"},
     {file = "parse-1.20.2.tar.gz", hash = "sha256:b41d604d16503c79d81af5165155c0b20f6c8d6c559efa66b4b695c3e5a0a0ce"},
@@ -1186,7 +1208,7 @@ name = "partd"
 version = "1.4.2"
 requires_python = ">=3.9"
 summary = "Appendable key-value storage"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "locket",
     "toolz",
@@ -1201,7 +1223,7 @@ name = "pathspec"
 version = "0.12.1"
 requires_python = ">=3.8"
 summary = "Utility library for gitignore style pattern matching of file paths."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev"]
 files = [
     {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"},
     {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
@@ -1223,7 +1245,7 @@ name = "plotly"
 version = "5.23.0"
 requires_python = ">=3.8"
 summary = "An open-source, interactive data visualization library for Python"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 dependencies = [
     "packaging",
     "tenacity>=6.2.0",
@@ -1248,7 +1270,7 @@ files = [
 name = "ply"
 version = "3.11"
 summary = "Python Lex & Yacc"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "ply-3.11-py2.py3-none-any.whl", hash = "sha256:096f9b8350b65ebd2fd1346b12452efe5b9607f7482813ffca50c22722a807ce"},
     {file = "ply-3.11.tar.gz", hash = "sha256:00c7c1aaa88358b9c765b6d3000c6eec0ba42abca5351b095321aef446081da3"},
@@ -1259,7 +1281,7 @@ name = "prefixcommons"
 version = "0.1.12"
 requires_python = ">=3.7,<4.0"
 summary = "A python API for working with ID prefixes"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "PyYAML<7.0,>=6.0",
     "click<9.0.0,>=8.1.3",
@@ -1276,7 +1298,7 @@ name = "prefixmaps"
 version = "0.2.5"
 requires_python = "<4.0,>=3.8"
 summary = "A python library for retrieving semantic prefix maps"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "curies>=0.5.3",
     "pyyaml>=5.3.1",
@@ -1291,10 +1313,11 @@ name = "pydantic"
 version = "2.8.2"
 requires_python = ">=3.8"
 summary = "Data validation using Python type hints"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "annotated-types>=0.4.0",
     "pydantic-core==2.20.1",
+    "typing-extensions>=4.12.2; python_version >= \"3.13\"",
     "typing-extensions>=4.6.1; python_version < \"3.13\"",
 ]
 files = [
@@ -1307,7 +1330,7 @@ name = "pydantic-core"
 version = "2.20.1"
 requires_python = ">=3.8"
 summary = "Core functionality for Pydantic validation and serialization"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "typing-extensions!=4.7.0,>=4.6.0",
 ]
@@ -1356,14 +1379,6 @@ files = [
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     {file = "pydantic_core-2.20.1.tar.gz", hash = "sha256:26ca695eeee5f9f1aeeb211ffc12f10bcb6f71e2989988fda61dabd65db878d4"},
 ]
 
@@ -1372,7 +1387,7 @@ name = "pydantic-settings"
 version = "2.4.0"
 requires_python = ">=3.8"
 summary = "Settings management using Pydantic"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "pydantic>=2.7.0",
     "python-dotenv>=0.21.0",
@@ -1387,7 +1402,7 @@ name = "pygments"
 version = "2.18.0"
 requires_python = ">=3.8"
 summary = "Pygments is a syntax highlighting package written in Python."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "pygments-2.18.0-py3-none-any.whl", hash = "sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a"},
     {file = "pygments-2.18.0.tar.gz", hash = "sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199"},
@@ -1397,7 +1412,7 @@ files = [
 name = "pyjsg"
 version = "0.11.10"
 summary = "Python JSON Schema Grammar interpreter"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "antlr4-python3-runtime~=4.9.3",
     "jsonasobj>=1.2.1",
@@ -1412,7 +1427,7 @@ name = "pyparsing"
 version = "3.1.2"
 requires_python = ">=3.6.8"
 summary = "pyparsing module - Classes and methods to define and execute parsing grammars"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "pyparsing-3.1.2-py3-none-any.whl", hash = "sha256:f9db75911801ed778fe61bb643079ff86601aca99fcae6345aa67292038fb742"},
     {file = "pyparsing-3.1.2.tar.gz", hash = "sha256:a1bac0ce561155ecc3ed78ca94d3c9378656ad4c94c1270de543f621420f94ad"},
@@ -1423,7 +1438,7 @@ name = "pyshex"
 version = "0.8.1"
 requires_python = ">=3.6"
 summary = "Python ShEx Implementation"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "cfgraph>=0.2.1",
     "chardet",
@@ -1445,7 +1460,7 @@ name = "pyshexc"
 version = "0.9.1"
 requires_python = ">=3.7"
 summary = "PyShExC - Python ShEx compiler"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "antlr4-python3-runtime~=4.9.3",
     "chardet",
@@ -1468,6 +1483,7 @@ groups = ["default", "dev", "tests"]
 dependencies = [
     "colorama; sys_platform == \"win32\"",
     "exceptiongroup>=1.0.0rc8; python_version < \"3.11\"",
+    "importlib-metadata>=0.12; python_version < \"3.8\"",
     "iniconfig",
     "packaging",
     "pluggy<2.0,>=0.12",
@@ -1513,7 +1529,7 @@ files = [
 name = "pytest-logging"
 version = "2015.11.4"
 summary = "Configures logging and allows tweaking the log level with a py.test flag"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "pytest>=2.8.1",
 ]
@@ -1555,7 +1571,7 @@ name = "python-dateutil"
 version = "2.9.0.post0"
 requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 summary = "Extensions to the standard Python datetime module"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "six>=1.5",
 ]
@@ -1569,7 +1585,7 @@ name = "python-dotenv"
 version = "1.0.1"
 requires_python = ">=3.8"
 summary = "Read key-value pairs from a .env file and set them as environment variables"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "python-dotenv-1.0.1.tar.gz", hash = "sha256:e324ee90a023d808f1959c46bcbc04446a10ced277783dc6ee09987c37ec10ca"},
     {file = "python_dotenv-1.0.1-py3-none-any.whl", hash = "sha256:f7b63ef50f1b690dddf550d03497b66d609393b40b564ed0d674909a68ebf16a"},
@@ -1579,7 +1595,7 @@ files = [
 name = "pytrie"
 version = "0.4.0"
 summary = "A pure Python implementation of the trie data structure."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "sortedcontainers",
 ]
@@ -1592,7 +1608,7 @@ files = [
 name = "pytz"
 version = "2024.1"
 summary = "World timezone definitions, modern and historical"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "pytz-2024.1-py2.py3-none-any.whl", hash = "sha256:328171f4e3623139da4983451950b28e95ac706e13f3f2630a879749e7a8b319"},
     {file = "pytz-2024.1.tar.gz", hash = "sha256:2a29735ea9c18baf14b448846bde5a48030ed267578472d8955cd0e7443a9812"},
@@ -1603,7 +1619,7 @@ name = "pyyaml"
 version = "6.0.1"
 requires_python = ">=3.6"
 summary = "YAML parser and emitter for Python"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "PyYAML-6.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d858aa552c999bc8a8d57426ed01e40bef403cd8ccdd0fc5f6f04a00414cac2a"},
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@@ -1636,7 +1652,7 @@ name = "rdflib"
 version = "7.0.0"
 requires_python = ">=3.8.1,<4.0.0"
 summary = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "isodate<0.7.0,>=0.6.0",
     "pyparsing<4,>=2.1.0",
@@ -1650,7 +1666,7 @@ files = [
 name = "rdflib-jsonld"
 version = "0.6.1"
 summary = "rdflib extension adding JSON-LD parser and serializer"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "rdflib>=5.0.0",
 ]
@@ -1664,7 +1680,7 @@ name = "rdflib-shim"
 version = "1.0.3"
 requires_python = ">=3.7"
 summary = "Shim for rdflib 5 and 6 incompatibilities"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "rdflib-jsonld==0.6.1",
     "rdflib>=5.0.0",
@@ -1679,7 +1695,7 @@ name = "referencing"
 version = "0.35.1"
 requires_python = ">=3.8"
 summary = "JSON Referencing + Python"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "attrs>=22.2.0",
     "rpds-py>=0.7.0",
@@ -1694,7 +1710,7 @@ name = "requests"
 version = "2.32.3"
 requires_python = ">=3.8"
 summary = "Python HTTP for Humans."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 dependencies = [
     "certifi>=2017.4.17",
     "charset-normalizer<4,>=2",
@@ -1729,7 +1745,7 @@ files = [
 name = "retrying"
 version = "1.3.4"
 summary = "Retrying"
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 dependencies = [
     "six>=1.7.0",
 ]
@@ -1743,7 +1759,7 @@ name = "rfc3339-validator"
 version = "0.1.4"
 requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 summary = "A pure python RFC3339 validator"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "six",
 ]
@@ -1756,7 +1772,7 @@ files = [
 name = "rfc3987"
 version = "1.3.8"
 summary = "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
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@@ -1767,10 +1783,11 @@ name = "rich"
 version = "13.7.1"
 requires_python = ">=3.7.0"
 summary = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "markdown-it-py>=2.2.0",
     "pygments<3.0.0,>=2.13.0",
+    "typing-extensions<5.0,>=4.0.0; python_version < \"3.9\"",
 ]
 files = [
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@@ -1782,7 +1799,7 @@ name = "rpds-py"
 version = "0.19.1"
 requires_python = ">=3.8"
 summary = "Python bindings to Rust's persistent data structures (rpds)"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "rpds_py-0.19.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:aaf71f95b21f9dc708123335df22e5a2fef6307e3e6f9ed773b2e0938cc4d491"},
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@@ -1835,18 +1852,6 @@ files = [
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 ]
 
@@ -1855,7 +1860,7 @@ name = "ruamel-yaml"
 version = "0.18.6"
 requires_python = ">=3.7"
 summary = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "ruamel-yaml-clib>=0.2.7; platform_python_implementation == \"CPython\" and python_version < \"3.13\"",
 ]
@@ -1869,7 +1874,7 @@ name = "ruamel-yaml-clib"
 version = "0.2.8"
 requires_python = ">=3.6"
 summary = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 marker = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""
 files = [
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@@ -1901,29 +1906,29 @@ files = [
 
 [[package]]
 name = "ruff"
-version = "0.5.5"
+version = "0.5.6"
 requires_python = ">=3.7"
 summary = "An extremely fast Python linter and code formatter, written in Rust."
 groups = ["dev"]
 files = [
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 [[package]]
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 version = "9.0.0"
 requires_python = ">=3.8"
 summary = "Retry code until it succeeds"
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+groups = ["dev", "plot", "tests"]
 files = [
     {file = "tenacity-9.0.0-py3-none-any.whl", hash = "sha256:93de0c98785b27fcf659856aa9f54bfbd399e29969b0621bc7f762bd441b4539"},
     {file = "tenacity-9.0.0.tar.gz", hash = "sha256:807f37ca97d62aa361264d497b0e31e92b8027044942bfa756160d908320d73b"},
@@ -2079,7 +2085,7 @@ name = "toolz"
 version = "0.12.1"
 requires_python = ">=3.7"
 summary = "List processing tools and functional utilities"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "toolz-0.12.1-py3-none-any.whl", hash = "sha256:d22731364c07d72eea0a0ad45bafb2c2937ab6fd38a3507bf55eae8744aa7d85"},
     {file = "toolz-0.12.1.tar.gz", hash = "sha256:ecca342664893f177a13dac0e6b41cbd8ac25a358e5f215316d43e2100224f4d"},
@@ -2087,16 +2093,16 @@ files = [
 
 [[package]]
 name = "tqdm"
-version = "4.66.4"
+version = "4.66.5"
 requires_python = ">=3.7"
 summary = "Fast, Extensible Progress Meter"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 dependencies = [
     "colorama; platform_system == \"Windows\"",
 ]
 files = [
-    {file = "tqdm-4.66.4-py3-none-any.whl", hash = "sha256:b75ca56b413b030bc3f00af51fd2c1a1a5eac6a0c1cca83cbb37a5c52abce644"},
-    {file = "tqdm-4.66.4.tar.gz", hash = "sha256:e4d936c9de8727928f3be6079590e97d9abfe8d39a590be678eb5919ffc186bb"},
+    {file = "tqdm-4.66.5-py3-none-any.whl", hash = "sha256:90279a3770753eafc9194a0364852159802111925aa30eb3f9d85b0e805ac7cd"},
+    {file = "tqdm-4.66.5.tar.gz", hash = "sha256:e1020aef2e5096702d8a025ac7d16b1577279c9d63f8375b63083e9a5f0fcbad"},
 ]
 
 [[package]]
@@ -2104,7 +2110,7 @@ name = "types-python-dateutil"
 version = "2.9.0.20240316"
 requires_python = ">=3.8"
 summary = "Typing stubs for python-dateutil"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"},
     {file = "types_python_dateutil-2.9.0.20240316-py3-none-any.whl", hash = "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"},
@@ -2115,7 +2121,7 @@ name = "typing-extensions"
 version = "4.12.2"
 requires_python = ">=3.8"
 summary = "Backported and Experimental Type Hints for Python 3.8+"
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
     {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
@@ -2126,7 +2132,7 @@ name = "tzdata"
 version = "2024.1"
 requires_python = ">=2"
 summary = "Provider of IANA time zone data"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "tzdata-2024.1-py2.py3-none-any.whl", hash = "sha256:9068bc196136463f5245e51efda838afa15aaeca9903f49050dfa2679db4d252"},
     {file = "tzdata-2024.1.tar.gz", hash = "sha256:2674120f8d891909751c38abcdfd386ac0a5a1127954fbc332af6b5ceae07efd"},
@@ -2137,7 +2143,7 @@ name = "uri-template"
 version = "1.3.0"
 requires_python = ">=3.7"
 summary = "RFC 6570 URI Template Processor"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"},
     {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"},
@@ -2162,7 +2168,7 @@ name = "urllib3"
 version = "2.2.2"
 requires_python = ">=3.8"
 summary = "HTTP library with thread-safe connection pooling, file post, and more."
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "urllib3-2.2.2-py3-none-any.whl", hash = "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472"},
     {file = "urllib3-2.2.2.tar.gz", hash = "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"},
@@ -2173,7 +2179,7 @@ name = "watchdog"
 version = "4.0.1"
 requires_python = ">=3.8"
 summary = "Filesystem events monitoring"
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "watchdog-4.0.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:da2dfdaa8006eb6a71051795856bedd97e5b03e57da96f98e375682c48850645"},
     {file = "watchdog-4.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e93f451f2dfa433d97765ca2634628b789b49ba8b504fdde5837cdcf25fdb53b"},
@@ -2186,10 +2192,6 @@ files = [
     {file = "watchdog-4.0.1-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:62c613ad689ddcb11707f030e722fa929f322ef7e4f18f5335d2b73c61a85c28"},
     {file = "watchdog-4.0.1-pp310-pypy310_pp73-macosx_10_9_x86_64.whl", hash = "sha256:0144c0ea9997b92615af1d94afc0c217e07ce2c14912c7b1a5731776329fcfc7"},
     {file = "watchdog-4.0.1-pp310-pypy310_pp73-macosx_11_0_arm64.whl", hash = "sha256:998d2be6976a0ee3a81fb8e2777900c28641fb5bfbd0c84717d89bca0addcdc5"},
-    {file = "watchdog-4.0.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl", hash = "sha256:e7921319fe4430b11278d924ef66d4daa469fafb1da679a2e48c935fa27af193"},
-    {file = "watchdog-4.0.1-pp38-pypy38_pp73-macosx_11_0_arm64.whl", hash = "sha256:f0de0f284248ab40188f23380b03b59126d1479cd59940f2a34f8852db710625"},
-    {file = "watchdog-4.0.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:bca36be5707e81b9e6ce3208d92d95540d4ca244c006b61511753583c81c70dd"},
-    {file = "watchdog-4.0.1-pp39-pypy39_pp73-macosx_11_0_arm64.whl", hash = "sha256:ab998f567ebdf6b1da7dc1e5accfaa7c6992244629c0fdaef062f43249bd8dee"},
     {file = "watchdog-4.0.1-py3-none-manylinux2014_aarch64.whl", hash = "sha256:dddba7ca1c807045323b6af4ff80f5ddc4d654c8bce8317dde1bd96b128ed253"},
     {file = "watchdog-4.0.1-py3-none-manylinux2014_armv7l.whl", hash = "sha256:4513ec234c68b14d4161440e07f995f231be21a09329051e67a2118a7a612d2d"},
     {file = "watchdog-4.0.1-py3-none-manylinux2014_i686.whl", hash = "sha256:4107ac5ab936a63952dea2a46a734a23230aa2f6f9db1291bf171dac3ebd53c6"},
@@ -2208,7 +2210,7 @@ name = "webcolors"
 version = "24.6.0"
 requires_python = ">=3.8"
 summary = "A library for working with the color formats defined by HTML and CSS."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "webcolors-24.6.0-py3-none-any.whl", hash = "sha256:8cf5bc7e28defd1d48b9e83d5fc30741328305a8195c29a8e668fa45586568a1"},
     {file = "webcolors-24.6.0.tar.gz", hash = "sha256:1d160d1de46b3e81e58d0a280d0c78b467dc80f47294b91b1ad8029d2cedb55b"},
@@ -2219,7 +2221,7 @@ name = "werkzeug"
 version = "3.0.3"
 requires_python = ">=3.8"
 summary = "The comprehensive WSGI web application library."
-groups = ["dev", "tests"]
+groups = ["dev", "plot", "tests"]
 dependencies = [
     "MarkupSafe>=2.1.1",
 ]
@@ -2233,7 +2235,7 @@ name = "wrapt"
 version = "1.16.0"
 requires_python = ">=3.6"
 summary = "Module for decorators, wrappers and monkey patching."
-groups = ["default", "dev", "tests"]
+groups = ["default"]
 files = [
     {file = "wrapt-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ffa565331890b90056c01db69c0fe634a776f8019c143a5ae265f9c6bc4bd6d4"},
     {file = "wrapt-1.16.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e4fdb9275308292e880dcbeb12546df7f3e0f96c6b41197e0cf37d2826359020"},
@@ -2274,7 +2276,7 @@ name = "zipp"
 version = "3.19.2"
 requires_python = ">=3.8"
 summary = "Backport of pathlib-compatible object wrapper for zip files"
-groups = ["default", "dev", "tests"]
+groups = ["default", "dev", "plot", "tests"]
 files = [
     {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
     {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
diff --git a/nwb_linkml/pyproject.toml b/nwb_linkml/pyproject.toml
index b90d92c..8455bed 100644
--- a/nwb_linkml/pyproject.toml
+++ b/nwb_linkml/pyproject.toml
@@ -22,7 +22,7 @@ dependencies = [
     "dask>=2023.9.2",
     "tqdm>=4.66.1",
     'typing-extensions>=4.12.2;python_version<"3.11"',
-    "numpydantic>=1.2.2",
+    "numpydantic>=1.3.0",
     "black>=24.4.2",
     "pandas>=2.2.2",
 ]
diff --git a/nwb_linkml/src/nwb_linkml/includes/hdmf.py b/nwb_linkml/src/nwb_linkml/includes/hdmf.py
index acac675..6ba881d 100644
--- a/nwb_linkml/src/nwb_linkml/includes/hdmf.py
+++ b/nwb_linkml/src/nwb_linkml/includes/hdmf.py
@@ -6,7 +6,7 @@ from typing import TYPE_CHECKING, Any, ClassVar, Dict, List, Optional, Tuple, Un
 
 from linkml.generators.pydanticgen.template import Import, Imports, ObjectImport
 from numpydantic import NDArray
-from pandas import DataFrame
+from pandas import DataFrame, Series
 from pydantic import BaseModel, ConfigDict, Field, model_validator
 
 if TYPE_CHECKING:
@@ -98,6 +98,11 @@ class DynamicTableMixin(BaseModel):
             rows, cols = item
             if isinstance(cols, (int, slice)):
                 cols = self.colnames[cols]
+
+            if isinstance(rows, int) and isinstance(cols, str):
+                # single scalar value
+                return self._columns[cols][rows]
+
             data = self._slice_range(rows, cols)
             return DataFrame.from_dict(data)
         else:
@@ -110,7 +115,14 @@ class DynamicTableMixin(BaseModel):
             cols = self.colnames
         elif isinstance(cols, str):
             cols = [cols]
-
+        data = {}
+        for k in cols:
+            val = self._columns[k][rows]
+            if isinstance(val, BaseModel):
+                # special case where pandas will unpack a pydantic model
+                # into {n_fields} rows, rather than keeping it in a dict
+                val = Series([val])
+            data[k] = val
         data = {k: self._columns[k][rows] for k in cols}
         return data
 
@@ -244,7 +256,9 @@ class VectorIndexMixin(BaseModel):
 
 DYNAMIC_TABLE_IMPORTS = Imports(
     imports=[
-        Import(module="pandas", objects=[ObjectImport(name="DataFrame")]),
+        Import(
+            module="pandas", objects=[ObjectImport(name="DataFrame"), ObjectImport(name="Series")]
+        ),
         Import(
             module="typing",
             objects=[
diff --git a/nwb_linkml/src/nwb_linkml/models/pydantic/hdmf_common/v1_8_0/hdmf_common_table.py b/nwb_linkml/src/nwb_linkml/models/pydantic/hdmf_common/v1_8_0/hdmf_common_table.py
index 6fa0e8c..39b21f7 100644
--- a/nwb_linkml/src/nwb_linkml/models/pydantic/hdmf_common/v1_8_0/hdmf_common_table.py
+++ b/nwb_linkml/src/nwb_linkml/models/pydantic/hdmf_common/v1_8_0/hdmf_common_table.py
@@ -1,14 +1,9 @@
 from __future__ import annotations
-from datetime import datetime, date
-from decimal import Decimal
-from enum import Enum
-import re
-import sys
-import numpy as np
-from ...hdmf_common.v1_8_0.hdmf_common_base import Data, Container
-from pandas import DataFrame
-from typing import Any, ClassVar, List, Literal, Dict, Optional, Union, overload, Tuple
-from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator, model_validator
+
+from ...hdmf_common.v1_8_0.hdmf_common_base import Data
+from pandas import DataFrame, Series
+from typing import Any, ClassVar, List, Dict, Optional, Union, overload, Tuple
+from pydantic import BaseModel, ConfigDict, Field, RootModel, model_validator
 from numpydantic import NDArray, Shape
 
 metamodel_version = "None"
@@ -198,6 +193,11 @@ class DynamicTableMixin(BaseModel):
             rows, cols = item
             if isinstance(cols, (int, slice)):
                 cols = self.colnames[cols]
+
+            if isinstance(rows, int) and isinstance(cols, str):
+                # single scalar value
+                return self._columns[cols][rows]
+
             data = self._slice_range(rows, cols)
             return DataFrame.from_dict(data)
         else:
@@ -210,8 +210,14 @@ class DynamicTableMixin(BaseModel):
             cols = self.colnames
         elif isinstance(cols, str):
             cols = [cols]
-
-        data = {k: self._columns[k][rows] for k in cols}
+        data = {}
+        for k in cols:
+            val = self._columns[k][rows]
+            if isinstance(val, BaseModel):
+                # special case where pandas will unpack a pydantic model
+                # into {n_fields} rows, rather than keeping it in a dict
+                val = Series([val])
+            data[k] = val
         return data
 
     def __setitem__(self, key: str, value: Any) -> None:
diff --git a/nwb_linkml/tests/test_includes/test_hdmf.py b/nwb_linkml/tests/test_includes/test_hdmf.py
index 73f08ef..2a3b1d0 100644
--- a/nwb_linkml/tests/test_includes/test_hdmf.py
+++ b/nwb_linkml/tests/test_includes/test_hdmf.py
@@ -5,6 +5,8 @@ import pytest
 
 # FIXME: Make this just be the output of the provider by patching into import machinery
 from nwb_linkml.models.pydantic.core.v2_7_0.namespace import (
+    Device,
+    DynamicTableRegion,
     ElectricalSeries,
     ElectrodeGroup,
     ExtracellularEphysElectrodes,
@@ -18,18 +20,95 @@ def electrical_series() -> Tuple["ElectricalSeries", "ExtracellularEphysElectrod
     """
     n_electrodes = 5
     n_times = 100
-    data = np.arange(0, n_electrodes * n_times).reshape(n_times, n_electrodes)
+    data = np.arange(0, n_electrodes * n_times).reshape(n_times, n_electrodes).astype(float)
     timestamps = np.linspace(0, 1, n_times)
 
+    device = Device(name="my electrode")
+
     # electrode group is the physical description of the electrodes
     electrode_group = ElectrodeGroup(
         name="GroupA",
+        device=device,
+        description="an electrode group",
+        location="you know where it is",
     )
 
     # make electrodes tables
     electrodes = ExtracellularEphysElectrodes(
+        description="idk these are also electrodes",
         id=np.arange(0, n_electrodes),
-        x=np.arange(0, n_electrodes),
-        y=np.arange(n_electrodes, n_electrodes * 2),
+        x=np.arange(0, n_electrodes).astype(float),
+        y=np.arange(n_electrodes, n_electrodes * 2).astype(float),
         group=[electrode_group] * n_electrodes,
+        group_name=[electrode_group.name] * n_electrodes,
+        location=[str(i) for i in range(n_electrodes)],
+        extra_column=["sup"] * n_electrodes,
     )
+
+    electrical_series = ElectricalSeries(
+        name="my recording!",
+        electrodes=DynamicTableRegion(
+            table=electrodes, value=np.arange(0, n_electrodes), name="electrodes", description="hey"
+        ),
+        timestamps=timestamps,
+        data=data,
+    )
+    return electrical_series, electrodes
+
+
+def test_dynamictable_indexing(electrical_series):
+    """
+    Can index values from a dynamictable
+    """
+    series, electrodes = electrical_series
+
+    colnames = [
+        "id",
+        "x",
+        "y",
+        "group",
+        "group_name",
+        "location",
+        "extra_column",
+    ]
+    dtypes = [
+        np.dtype("int64"),
+        np.dtype("float64"),
+        np.dtype("float64"),
+    ] + ([np.dtype("O")] * 4)
+
+    row = electrodes[0]
+    # successfully get a single row :)
+    assert row.shape == (1, 7)
+    assert row.dtypes.values.tolist() == dtypes
+    assert row.columns.tolist() == colnames
+
+    # slice a range of rows
+    rows = electrodes[0:3]
+    assert rows.shape == (3, 7)
+    assert rows.dtypes.values.tolist() == dtypes
+    assert rows.columns.tolist() == colnames
+
+    # get a single column
+    col = electrodes["y"]
+    assert all(col == [5, 6, 7, 8, 9])
+
+    # get a single cell
+    val = electrodes[0, "y"]
+    assert val == 5
+    val = electrodes[0, 2]
+    assert val == 5
+
+    # get a slice of rows and columns
+    subsection = electrodes[0:3, 0:3]
+    assert subsection.shape == (3, 3)
+    assert subsection.columns.tolist() == colnames[0:3]
+    assert subsection.dtypes.values.tolist() == dtypes[0:3]
+
+
+def test_dynamictable_append_column():
+    pass
+
+
+def test_dynamictable_append_row():
+    pass