mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-11-12 17:54:29 +00:00
missed generated schema somehow...
This commit is contained in:
parent
19d97ad3af
commit
c9a2423a9d
GPG key ID:
6DCB96EF1E4D232D
147 changed files with 5670 additions and 7357 deletions
|
|
@ -1,4 +1,11 @@
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|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -39,32 +46,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
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||||
maximum_cardinality: 4
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||||
NWBContainer:
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||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
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||||
|
|
@ -130,7 +130,10 @@ classes:
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|||
name: timestamps
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||||
description: Timestamps for samples stored in data, in seconds, relative to
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||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
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||||
multivalued: true
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||||
multivalued: false
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||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
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||||
range: float64
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||||
required: false
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||||
control:
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||||
|
|
@ -138,7 +141,10 @@ classes:
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|||
description: Numerical labels that apply to each time point in data for the
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||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
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||||
range: uint8
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||||
required: false
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||||
control_description:
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||||
|
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@ -146,7 +152,10 @@ classes:
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|||
description: Description of each control value. Must be present if control
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||||
is present. If present, control_description[0] should describe time points
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||||
where control == 0.
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||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
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||||
sync:
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||||
|
|
@ -201,27 +210,26 @@ classes:
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|||
range: text
|
||||
array:
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||||
name: array
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||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
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||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
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||||
name: num_times
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||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
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||||
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|
@ -268,13 +276,14 @@ classes:
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|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
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||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
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||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
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||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -59,19 +66,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
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||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
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||||
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|
@ -88,12 +91,13 @@ classes:
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|||
events. BehavioralTimeSeries is for continuous data.
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||||
is_a: NWBDataInterface
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||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
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||||
tree_root: true
|
||||
BehavioralEvents:
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||||
name: BehavioralEvents
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||||
|
|
@ -101,12 +105,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
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||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
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||||
name: BehavioralTimeSeries
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||||
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|
@ -114,36 +119,39 @@ classes:
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|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -154,22 +162,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.device
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.device
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ecephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ecephys
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -25,8 +32,21 @@ classes:
|
|||
name: data
|
||||
description: Recorded voltage data.
|
||||
multivalued: false
|
||||
range: ElectricalSeries__data
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||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
electrodes:
|
||||
name: electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -45,47 +65,13 @@ classes:
|
|||
as native values generated by data acquisition systems. If this dataset
|
||||
is not present, then there is no channel-specific conversion factor, i.e.
|
||||
it is 1 for all channels.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_channels
|
||||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
ElectricalSeries__data:
|
||||
name: ElectricalSeries__data
|
||||
description: Recorded voltage data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. This value
|
||||
is fixed to 'volts'. Actual stored values are not necessarily stored in
|
||||
these units. To access the data in these units, multiply 'data' by 'conversion'
|
||||
and 'channel_conversion' (if present).
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ElectricalSeries__data__Array
|
||||
ElectricalSeries__data__Array:
|
||||
name: ElectricalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
ElectricalSeries__electrodes:
|
||||
name: ElectricalSeries__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -120,52 +106,31 @@ classes:
|
|||
name: data
|
||||
description: Spike waveforms.
|
||||
multivalued: false
|
||||
range: SpikeEventSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
timestamps:
|
||||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
Timestamps are required for the events. Unlike for TimeSeries, timestamps
|
||||
are required for SpikeEventSeries and are thus re-specified here.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
SpikeEventSeries__data:
|
||||
name: SpikeEventSeries__data
|
||||
description: Spike waveforms.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement for waveforms, which is fixed to 'volts'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpikeEventSeries__data__Array
|
||||
SpikeEventSeries__data__Array:
|
||||
name: SpikeEventSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: numeric
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
FeatureExtraction:
|
||||
name: FeatureExtraction
|
||||
description: Features, such as PC1 and PC2, that are extracted from signals stored
|
||||
|
|
@ -181,19 +146,30 @@ classes:
|
|||
name: description
|
||||
description: Description of features (eg, ''PC1'') for each of the extracted
|
||||
features.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
features:
|
||||
name: features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
multivalued: false
|
||||
range: FeatureExtraction__features
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_features
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of events that features correspond to (can be a link).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
electrodes:
|
||||
|
|
@ -204,36 +180,6 @@ classes:
|
|||
range: FeatureExtraction__electrodes
|
||||
required: true
|
||||
tree_root: true
|
||||
FeatureExtraction__features:
|
||||
name: FeatureExtraction__features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(features)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: features
|
||||
array:
|
||||
name: array
|
||||
range: FeatureExtraction__features__Array
|
||||
FeatureExtraction__features__Array:
|
||||
name: FeatureExtraction__features__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: float32
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: float32
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: float32
|
||||
required: true
|
||||
FeatureExtraction__electrodes:
|
||||
name: FeatureExtraction__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -270,13 +216,19 @@ classes:
|
|||
corresponding to time of event. ''description'' should define what is meant
|
||||
by time of event (e.g., .25 ms before action potential peak, zero-crossing
|
||||
time, etc). The index points to each event from the raw data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Timestamps of events, in seconds.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -287,12 +239,13 @@ classes:
|
|||
during experiment acquisition.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
tree_root: true
|
||||
FilteredEphys:
|
||||
name: FilteredEphys
|
||||
|
|
@ -309,12 +262,13 @@ classes:
|
|||
the ElectricalSeries.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
LFP:
|
||||
name: LFP
|
||||
|
|
@ -323,12 +277,13 @@ classes:
|
|||
properties should be noted in the ElectricalSeries description or comments field.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
ElectrodeGroup:
|
||||
name: ElectrodeGroup
|
||||
|
|
@ -385,72 +340,24 @@ classes:
|
|||
3 is in array slot [3]). Waveforms corresponding to gaps in cluster sequence
|
||||
should be empty (e.g., zero- filled)
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_mean
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as
|
||||
in mean
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_sd
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
tree_root: true
|
||||
ClusterWaveforms__waveform_mean:
|
||||
name: ClusterWaveforms__waveform_mean
|
||||
description: The mean waveform for each cluster, using the same indices for each
|
||||
wave as cluster numbers in the associated Clustering module (i.e, cluster 3
|
||||
is in array slot [3]). Waveforms corresponding to gaps in cluster sequence should
|
||||
be empty (e.g., zero- filled)
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_mean__Array
|
||||
ClusterWaveforms__waveform_mean__Array:
|
||||
name: ClusterWaveforms__waveform_mean__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
ClusterWaveforms__waveform_sd:
|
||||
name: ClusterWaveforms__waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as in
|
||||
mean
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_sd__Array
|
||||
ClusterWaveforms__waveform_sd__Array:
|
||||
name: ClusterWaveforms__waveform_sd__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
Clustering:
|
||||
name: Clustering
|
||||
description: DEPRECATED Clustered spike data, whether from automatic clustering
|
||||
|
|
@ -472,21 +379,30 @@ classes:
|
|||
num:
|
||||
name: num
|
||||
description: Cluster number of each event
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
peak_over_rms:
|
||||
name: peak_over_rms
|
||||
description: Maximum ratio of waveform peak to RMS on any channel in the cluster
|
||||
(provides a basic clustering metric).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of clustered events, in seconds. This may be a link to
|
||||
times field in associated FeatureExtraction module.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.epoch
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.epoch
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.file
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.file
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -41,7 +48,10 @@ classes:
|
|||
The file can be created after the experiment was run, so this may differ
|
||||
from the experiment start time. Each modification to the nwb file adds a
|
||||
new entry to the array.'
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_modifications
|
||||
range: isodatetime
|
||||
required: true
|
||||
identifier:
|
||||
|
|
@ -183,9 +193,14 @@ classes:
|
|||
having a particular scientific goal, trials (see trials subgroup) during
|
||||
an experiment, or epochs (see epochs subgroup) deriving from analysis of
|
||||
data.
|
||||
multivalued: false
|
||||
range: NWBFile__intervals
|
||||
required: false
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
units:
|
||||
name: units
|
||||
description: Data about sorted spike units.
|
||||
|
|
@ -274,7 +289,10 @@ classes:
|
|||
name: experimenter
|
||||
description: Name of person(s) who performed the experiment. Can also specify
|
||||
roles of different people involved.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_experimenters
|
||||
range: text
|
||||
required: false
|
||||
institution:
|
||||
|
|
@ -286,7 +304,10 @@ classes:
|
|||
keywords:
|
||||
name: keywords
|
||||
description: Terms to search over.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_keywords
|
||||
range: text
|
||||
required: false
|
||||
lab:
|
||||
|
|
@ -318,7 +339,10 @@ classes:
|
|||
related_publications:
|
||||
name: related_publications
|
||||
description: Publication information. PMID, DOI, URL, etc.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_publications
|
||||
range: text
|
||||
required: false
|
||||
session_id:
|
||||
|
|
@ -622,42 +646,3 @@ classes:
|
|||
multivalued: false
|
||||
range: SweepTable
|
||||
required: false
|
||||
NWBFile__intervals:
|
||||
name: NWBFile__intervals
|
||||
description: Experimental intervals, whether that be logically distinct sub-experiments
|
||||
having a particular scientific goal, trials (see trials subgroup) during an
|
||||
experiment, or epochs (see epochs subgroup) deriving from analysis of data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: intervals
|
||||
epochs:
|
||||
name: epochs
|
||||
description: Divisions in time marking experimental stages or sub-divisions
|
||||
of a single recording session.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
trials:
|
||||
name: trials
|
||||
description: Repeated experimental events that have a logical grouping.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
invalid_times:
|
||||
name: invalid_times
|
||||
description: Time intervals that should be removed from analysis.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
time_intervals:
|
||||
name: time_intervals
|
||||
description: Optional additional table(s) for describing other experimental
|
||||
time intervals.
|
||||
multivalued: true
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.icephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.icephys
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -30,8 +37,8 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Recorded voltage or current.
|
||||
multivalued: true
|
||||
range: numeric
|
||||
multivalued: false
|
||||
range: PatchClampSeries__data
|
||||
required: true
|
||||
gain:
|
||||
name: gain
|
||||
|
|
@ -41,6 +48,29 @@ classes:
|
|||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
PatchClampSeries__data:
|
||||
name: PatchClampSeries__data
|
||||
description: Recorded voltage or current.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. Actual stored
|
||||
values are not necessarily stored in these units. To access the data in
|
||||
these units, multiply 'data' by 'conversion'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
CurrentClampSeries:
|
||||
name: CurrentClampSeries
|
||||
description: Voltage data from an intracellular current-clamp recording. A corresponding
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.image
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.image
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -16,22 +23,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: GrayscaleImage__Array
|
||||
tree_root: true
|
||||
GrayscaleImage__Array:
|
||||
name: GrayscaleImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
RGBImage:
|
||||
name: RGBImage
|
||||
description: A color image.
|
||||
|
|
@ -42,28 +34,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBImage__Array
|
||||
tree_root: true
|
||||
RGBImage__Array:
|
||||
name: RGBImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RGBAImage:
|
||||
name: RGBAImage
|
||||
description: A color image with transparency.
|
||||
|
|
@ -74,28 +45,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBAImage__Array
|
||||
tree_root: true
|
||||
RGBAImage__Array:
|
||||
name: RGBAImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageSeries:
|
||||
name: ImageSeries
|
||||
description: General image data that is common between acquisition and stimulus
|
||||
|
|
@ -115,12 +65,27 @@ classes:
|
|||
name: data
|
||||
description: Binary data representing images across frames.
|
||||
multivalued: false
|
||||
range: ImageSeries__data
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: z
|
||||
dimension:
|
||||
name: dimension
|
||||
description: Number of pixels on x, y, (and z) axes.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: rank
|
||||
range: int32
|
||||
required: false
|
||||
external_file:
|
||||
|
|
@ -130,8 +95,8 @@ classes:
|
|||
in the file system as one or more image file(s). This field should NOT be
|
||||
used if the image is stored in another NWB file and that file is linked
|
||||
to this file.
|
||||
multivalued: true
|
||||
range: text
|
||||
multivalued: false
|
||||
range: ImageSeries__external_file
|
||||
required: false
|
||||
format:
|
||||
name: format
|
||||
|
|
@ -143,40 +108,41 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
ImageSeries__data:
|
||||
name: ImageSeries__data
|
||||
description: Binary data representing images across frames.
|
||||
ImageSeries__external_file:
|
||||
name: ImageSeries__external_file
|
||||
description: Paths to one or more external file(s). The field is only present
|
||||
if format='external'. This is only relevant if the image series is stored in
|
||||
the file system as one or more image file(s). This field should NOT be used
|
||||
if the image is stored in another NWB file and that file is linked to this file.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
ifabsent: string(external_file)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
equals_string: external_file
|
||||
starting_frame:
|
||||
name: starting_frame
|
||||
description: Each external image may contain one or more consecutive frames
|
||||
of the full ImageSeries. This attribute serves as an index to indicate which
|
||||
frames each file contains, to faciliate random access. The 'starting_frame'
|
||||
attribute, hence, contains a list of frame numbers within the full ImageSeries
|
||||
of the first frame of each file listed in the parent 'external_file' dataset.
|
||||
Zero-based indexing is used (hence, the first element will always be zero).
|
||||
For example, if the 'external_file' dataset has three paths to files and
|
||||
the first file has 5 frames, the second file has 10 frames, and the third
|
||||
file has 20 frames, then this attribute will have values [0, 5, 15]. If
|
||||
there is a single external file that holds all of the frames of the ImageSeries
|
||||
(and so there is a single element in the 'external_file' dataset), then
|
||||
this attribute should have value [0].
|
||||
range: int32
|
||||
array:
|
||||
name: array
|
||||
range: ImageSeries__data__Array
|
||||
ImageSeries__data__Array:
|
||||
name: ImageSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
z:
|
||||
name: z
|
||||
range: numeric
|
||||
required: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_files
|
||||
range: text
|
||||
ImageMaskSeries:
|
||||
name: ImageMaskSeries
|
||||
description: An alpha mask that is applied to a presented visual stimulus. The
|
||||
|
|
@ -216,8 +182,17 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: OpticalSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height, depth
|
||||
exact_cardinality: 3
|
||||
orientation:
|
||||
name: orientation
|
||||
description: Description of image relative to some reference frame (e.g.,
|
||||
|
|
@ -226,36 +201,6 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
OpticalSeries__field_of_view:
|
||||
name: OpticalSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__field_of_view__Array
|
||||
OpticalSeries__field_of_view__Array:
|
||||
name: OpticalSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width, height:
|
||||
name: width, height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width, height, depth:
|
||||
name: width, height, depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
IndexSeries:
|
||||
name: IndexSeries
|
||||
description: Stores indices to image frames stored in an ImageSeries. The purpose
|
||||
|
|
@ -274,7 +219,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Index of the frame in the referenced ImageSeries.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int32
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.language
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: 'False'
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
description: Adapter objects to mimic the behavior of elements in the nwb-schema-language
|
||||
id: nwb.language
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.misc
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.misc
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -35,13 +42,19 @@ classes:
|
|||
feature_units:
|
||||
name: feature_units
|
||||
description: Units of each feature.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: false
|
||||
features:
|
||||
name: features
|
||||
description: Description of the features represented in TimeSeries::data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -64,19 +77,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AbstractFeatureSeries__data__Array
|
||||
AbstractFeatureSeries__data__Array:
|
||||
name: AbstractFeatureSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
AnnotationSeries:
|
||||
name: AnnotationSeries
|
||||
description: Stores user annotations made during an experiment. The data[] field
|
||||
|
|
@ -93,7 +102,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Annotations made during an experiment.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -116,7 +128,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Use values >0 if interval started, <0 if interval ended.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int8
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -169,23 +184,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: DecompositionSeries__data__Array
|
||||
DecompositionSeries__data__Array:
|
||||
name: DecompositionSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: true
|
||||
num_bands:
|
||||
name: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
DecompositionSeries__bands:
|
||||
name: DecompositionSeries__bands
|
||||
description: Table for describing the bands that this series was generated from.
|
||||
|
|
@ -209,33 +213,31 @@ classes:
|
|||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
multivalued: false
|
||||
range: DecompositionSeries__bands__band_limits
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
- alias: low, high
|
||||
exact_cardinality: 2
|
||||
range: float32
|
||||
required: true
|
||||
band_mean:
|
||||
name: band_mean
|
||||
description: The mean Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
band_stdev:
|
||||
name: band_stdev
|
||||
description: The standard deviation of Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
DecompositionSeries__bands__band_limits:
|
||||
name: DecompositionSeries__bands__band_limits
|
||||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(band_limits)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: band_limits
|
||||
Units:
|
||||
name: Units
|
||||
description: Data about spiking units. Event times of observed units (e.g. cell,
|
||||
|
|
@ -269,7 +271,12 @@ classes:
|
|||
name: obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
multivalued: false
|
||||
range: Units__obs_intervals
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_intervals
|
||||
- alias: start|end
|
||||
exact_cardinality: 2
|
||||
range: float64
|
||||
required: false
|
||||
electrodes_index:
|
||||
name: electrodes_index
|
||||
|
|
@ -292,14 +299,34 @@ classes:
|
|||
name: waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_mean
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_sd
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
tree_root: true
|
||||
Units__spike_times_index:
|
||||
name: Units__spike_times_index
|
||||
|
|
@ -345,18 +372,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals_index
|
||||
Units__obs_intervals:
|
||||
name: Units__obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(obs_intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals
|
||||
Units__electrodes_index:
|
||||
name: Units__electrodes_index
|
||||
description: Index into electrodes.
|
||||
|
|
@ -381,43 +396,3 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: electrodes
|
||||
Units__waveform_mean:
|
||||
name: Units__waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveform_sd:
|
||||
name: Units__waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ogen
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ogen
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -20,7 +27,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Applied power for optogenetic stimulus, in watts.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ophys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ophys
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -33,39 +40,18 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: TwoPhotonSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 3
|
||||
tree_root: true
|
||||
TwoPhotonSeries__field_of_view:
|
||||
name: TwoPhotonSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: TwoPhotonSeries__field_of_view__Array
|
||||
TwoPhotonSeries__field_of_view__Array:
|
||||
name: TwoPhotonSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width|height:
|
||||
name: width|height
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width|height|depth:
|
||||
name: width|height|depth
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RoiResponseSeries:
|
||||
name: RoiResponseSeries
|
||||
description: ROI responses over an imaging plane. The first dimension represents
|
||||
|
|
@ -81,8 +67,16 @@ classes:
|
|||
name: data
|
||||
description: Signals from ROIs.
|
||||
multivalued: false
|
||||
range: RoiResponseSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_ROIs
|
||||
rois:
|
||||
name: rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -91,32 +85,6 @@ classes:
|
|||
range: RoiResponseSeries__rois
|
||||
required: true
|
||||
tree_root: true
|
||||
RoiResponseSeries__data:
|
||||
name: RoiResponseSeries__data
|
||||
description: Signals from ROIs.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: RoiResponseSeries__data__Array
|
||||
RoiResponseSeries__data__Array:
|
||||
name: RoiResponseSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_ROIs:
|
||||
name: num_ROIs
|
||||
range: numeric
|
||||
required: false
|
||||
RoiResponseSeries__rois:
|
||||
name: RoiResponseSeries__rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -137,12 +105,13 @@ classes:
|
|||
for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
Fluorescence:
|
||||
name: Fluorescence
|
||||
|
|
@ -151,12 +120,13 @@ classes:
|
|||
for ROIs and for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
ImageSegmentation:
|
||||
name: ImageSegmentation
|
||||
|
|
@ -169,12 +139,13 @@ classes:
|
|||
is required and ROI names should remain consistent between them.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
ImagingPlane:
|
||||
name: ImagingPlane
|
||||
|
|
@ -302,29 +273,21 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingPlane__manifold__Array
|
||||
ImagingPlane__manifold__Array:
|
||||
name: ImagingPlane__manifold__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
height:
|
||||
name: height
|
||||
range: float32
|
||||
required: true
|
||||
width:
|
||||
name: width
|
||||
range: float32
|
||||
required: true
|
||||
x, y, z:
|
||||
name: x, y, z
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
depth:
|
||||
name: depth
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: height
|
||||
- alias: width
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: height
|
||||
- alias: width
|
||||
- alias: depth
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
ImagingPlane__origin_coords:
|
||||
name: ImagingPlane__origin_coords
|
||||
description: Physical location of the first element of the imaging plane (0, 0)
|
||||
|
|
@ -344,23 +307,13 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingPlane__origin_coords__Array
|
||||
ImagingPlane__origin_coords__Array:
|
||||
name: ImagingPlane__origin_coords__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x, y:
|
||||
name: x, y
|
||||
array:
|
||||
dimensions:
|
||||
- alias: x, y
|
||||
exact_cardinality: 2
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
x, y, z:
|
||||
name: x, y, z
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
ImagingPlane__grid_spacing:
|
||||
name: ImagingPlane__grid_spacing
|
||||
description: Space between pixels in (x, y) or voxels in (x, y, z) directions,
|
||||
|
|
@ -380,23 +333,13 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingPlane__grid_spacing__Array
|
||||
ImagingPlane__grid_spacing__Array:
|
||||
name: ImagingPlane__grid_spacing__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x, y:
|
||||
name: x, y
|
||||
array:
|
||||
dimensions:
|
||||
- alias: x, y
|
||||
exact_cardinality: 2
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
x, y, z:
|
||||
name: x, y, z
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
OpticalChannel:
|
||||
name: OpticalChannel
|
||||
description: An optical channel used to record from an imaging plane.
|
||||
|
|
@ -426,10 +369,11 @@ classes:
|
|||
frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.retinotopy
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.retinotopy
|
||||
version: 2.2.0
|
||||
imports:
|
||||
|
|
@ -28,20 +35,12 @@ classes:
|
|||
range: float32
|
||||
array:
|
||||
name: array
|
||||
range: RetinotopyMap__Array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
tree_root: true
|
||||
RetinotopyMap__Array:
|
||||
name: RetinotopyMap__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
AxisMap:
|
||||
name: AxisMap
|
||||
description: Abstract two-dimensional map of responses to stimuli along a single
|
||||
|
|
@ -59,20 +58,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AxisMap__Array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
tree_root: true
|
||||
AxisMap__Array:
|
||||
name: AxisMap__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
RetinotopyImage:
|
||||
name: RetinotopyImage
|
||||
description: 'Gray-scale image related to retinotopic mapping. Array structure:
|
||||
|
|
@ -155,7 +146,11 @@ classes:
|
|||
description: Two-element array describing the contents of the two response
|
||||
axis fields. Description should be something like ['altitude', 'azimuth']
|
||||
or '['radius', 'theta'].
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_axes
|
||||
exact_cardinality: 2
|
||||
range: text
|
||||
required: true
|
||||
focal_depth_image:
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
name: core
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: true
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: 'True'
|
||||
value: core
|
||||
description: NWB namespace
|
||||
id: core
|
||||
version: 2.2.0
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -39,32 +46,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
NWBContainer:
|
||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
|
||||
|
|
@ -130,7 +130,10 @@ classes:
|
|||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: false
|
||||
control:
|
||||
|
|
@ -138,7 +141,10 @@ classes:
|
|||
description: Numerical labels that apply to each time point in data for the
|
||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: uint8
|
||||
required: false
|
||||
control_description:
|
||||
|
|
@ -146,7 +152,10 @@ classes:
|
|||
description: Description of each control value. Must be present if control
|
||||
is present. If present, control_description[0] should describe time points
|
||||
where control == 0.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
|
||||
sync:
|
||||
|
|
@ -201,27 +210,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
|
||||
|
|
@ -268,13 +276,14 @@ classes:
|
|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -59,19 +66,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
|
||||
|
|
@ -88,12 +91,13 @@ classes:
|
|||
events. BehavioralTimeSeries is for continuous data.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
tree_root: true
|
||||
BehavioralEvents:
|
||||
name: BehavioralEvents
|
||||
|
|
@ -101,12 +105,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
|
||||
name: BehavioralTimeSeries
|
||||
|
|
@ -114,36 +119,39 @@ classes:
|
|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -154,22 +162,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.device
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.device
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ecephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ecephys
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -25,8 +32,21 @@ classes:
|
|||
name: data
|
||||
description: Recorded voltage data.
|
||||
multivalued: false
|
||||
range: ElectricalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
electrodes:
|
||||
name: electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -45,47 +65,13 @@ classes:
|
|||
as native values generated by data acquisition systems. If this dataset
|
||||
is not present, then there is no channel-specific conversion factor, i.e.
|
||||
it is 1 for all channels.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_channels
|
||||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
ElectricalSeries__data:
|
||||
name: ElectricalSeries__data
|
||||
description: Recorded voltage data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. This value
|
||||
is fixed to 'volts'. Actual stored values are not necessarily stored in
|
||||
these units. To access the data in these units, multiply 'data' by 'conversion'
|
||||
and 'channel_conversion' (if present).
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ElectricalSeries__data__Array
|
||||
ElectricalSeries__data__Array:
|
||||
name: ElectricalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
ElectricalSeries__electrodes:
|
||||
name: ElectricalSeries__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -120,52 +106,31 @@ classes:
|
|||
name: data
|
||||
description: Spike waveforms.
|
||||
multivalued: false
|
||||
range: SpikeEventSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
timestamps:
|
||||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
Timestamps are required for the events. Unlike for TimeSeries, timestamps
|
||||
are required for SpikeEventSeries and are thus re-specified here.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
SpikeEventSeries__data:
|
||||
name: SpikeEventSeries__data
|
||||
description: Spike waveforms.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement for waveforms, which is fixed to 'volts'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpikeEventSeries__data__Array
|
||||
SpikeEventSeries__data__Array:
|
||||
name: SpikeEventSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: numeric
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
FeatureExtraction:
|
||||
name: FeatureExtraction
|
||||
description: Features, such as PC1 and PC2, that are extracted from signals stored
|
||||
|
|
@ -181,19 +146,30 @@ classes:
|
|||
name: description
|
||||
description: Description of features (eg, ''PC1'') for each of the extracted
|
||||
features.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
features:
|
||||
name: features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
multivalued: false
|
||||
range: FeatureExtraction__features
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_features
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of events that features correspond to (can be a link).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
electrodes:
|
||||
|
|
@ -204,36 +180,6 @@ classes:
|
|||
range: FeatureExtraction__electrodes
|
||||
required: true
|
||||
tree_root: true
|
||||
FeatureExtraction__features:
|
||||
name: FeatureExtraction__features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(features)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: features
|
||||
array:
|
||||
name: array
|
||||
range: FeatureExtraction__features__Array
|
||||
FeatureExtraction__features__Array:
|
||||
name: FeatureExtraction__features__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: float32
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: float32
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: float32
|
||||
required: true
|
||||
FeatureExtraction__electrodes:
|
||||
name: FeatureExtraction__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -270,13 +216,19 @@ classes:
|
|||
corresponding to time of event. ''description'' should define what is meant
|
||||
by time of event (e.g., .25 ms before action potential peak, zero-crossing
|
||||
time, etc). The index points to each event from the raw data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Timestamps of events, in seconds.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -287,12 +239,13 @@ classes:
|
|||
during experiment acquisition.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
tree_root: true
|
||||
FilteredEphys:
|
||||
name: FilteredEphys
|
||||
|
|
@ -309,12 +262,13 @@ classes:
|
|||
the ElectricalSeries.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
LFP:
|
||||
name: LFP
|
||||
|
|
@ -323,12 +277,13 @@ classes:
|
|||
properties should be noted in the ElectricalSeries description or comments field.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
ElectrodeGroup:
|
||||
name: ElectrodeGroup
|
||||
|
|
@ -385,72 +340,24 @@ classes:
|
|||
3 is in array slot [3]). Waveforms corresponding to gaps in cluster sequence
|
||||
should be empty (e.g., zero- filled)
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_mean
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as
|
||||
in mean
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_sd
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
tree_root: true
|
||||
ClusterWaveforms__waveform_mean:
|
||||
name: ClusterWaveforms__waveform_mean
|
||||
description: The mean waveform for each cluster, using the same indices for each
|
||||
wave as cluster numbers in the associated Clustering module (i.e, cluster 3
|
||||
is in array slot [3]). Waveforms corresponding to gaps in cluster sequence should
|
||||
be empty (e.g., zero- filled)
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_mean__Array
|
||||
ClusterWaveforms__waveform_mean__Array:
|
||||
name: ClusterWaveforms__waveform_mean__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
ClusterWaveforms__waveform_sd:
|
||||
name: ClusterWaveforms__waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as in
|
||||
mean
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_sd__Array
|
||||
ClusterWaveforms__waveform_sd__Array:
|
||||
name: ClusterWaveforms__waveform_sd__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
Clustering:
|
||||
name: Clustering
|
||||
description: DEPRECATED Clustered spike data, whether from automatic clustering
|
||||
|
|
@ -472,21 +379,30 @@ classes:
|
|||
num:
|
||||
name: num
|
||||
description: Cluster number of each event
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
peak_over_rms:
|
||||
name: peak_over_rms
|
||||
description: Maximum ratio of waveform peak to RMS on any channel in the cluster
|
||||
(provides a basic clustering metric).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of clustered events, in seconds. This may be a link to
|
||||
times field in associated FeatureExtraction module.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.epoch
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.epoch
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.file
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.file
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -41,7 +48,10 @@ classes:
|
|||
The file can be created after the experiment was run, so this may differ
|
||||
from the experiment start time. Each modification to the nwb file adds a
|
||||
new entry to the array.'
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_modifications
|
||||
range: isodatetime
|
||||
required: true
|
||||
identifier:
|
||||
|
|
@ -183,9 +193,14 @@ classes:
|
|||
having a particular scientific goal, trials (see trials subgroup) during
|
||||
an experiment, or epochs (see epochs subgroup) deriving from analysis of
|
||||
data.
|
||||
multivalued: false
|
||||
range: NWBFile__intervals
|
||||
required: false
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
units:
|
||||
name: units
|
||||
description: Data about sorted spike units.
|
||||
|
|
@ -274,7 +289,10 @@ classes:
|
|||
name: experimenter
|
||||
description: Name of person(s) who performed the experiment. Can also specify
|
||||
roles of different people involved.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_experimenters
|
||||
range: text
|
||||
required: false
|
||||
institution:
|
||||
|
|
@ -286,7 +304,10 @@ classes:
|
|||
keywords:
|
||||
name: keywords
|
||||
description: Terms to search over.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_keywords
|
||||
range: text
|
||||
required: false
|
||||
lab:
|
||||
|
|
@ -318,7 +339,10 @@ classes:
|
|||
related_publications:
|
||||
name: related_publications
|
||||
description: Publication information. PMID, DOI, URL, etc.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_publications
|
||||
range: text
|
||||
required: false
|
||||
session_id:
|
||||
|
|
@ -622,42 +646,3 @@ classes:
|
|||
multivalued: false
|
||||
range: SweepTable
|
||||
required: false
|
||||
NWBFile__intervals:
|
||||
name: NWBFile__intervals
|
||||
description: Experimental intervals, whether that be logically distinct sub-experiments
|
||||
having a particular scientific goal, trials (see trials subgroup) during an
|
||||
experiment, or epochs (see epochs subgroup) deriving from analysis of data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: intervals
|
||||
epochs:
|
||||
name: epochs
|
||||
description: Divisions in time marking experimental stages or sub-divisions
|
||||
of a single recording session.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
trials:
|
||||
name: trials
|
||||
description: Repeated experimental events that have a logical grouping.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
invalid_times:
|
||||
name: invalid_times
|
||||
description: Time intervals that should be removed from analysis.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
time_intervals:
|
||||
name: time_intervals
|
||||
description: Optional additional table(s) for describing other experimental
|
||||
time intervals.
|
||||
multivalued: true
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.icephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.icephys
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -30,8 +37,8 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Recorded voltage or current.
|
||||
multivalued: true
|
||||
range: numeric
|
||||
multivalued: false
|
||||
range: PatchClampSeries__data
|
||||
required: true
|
||||
gain:
|
||||
name: gain
|
||||
|
|
@ -41,6 +48,29 @@ classes:
|
|||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
PatchClampSeries__data:
|
||||
name: PatchClampSeries__data
|
||||
description: Recorded voltage or current.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. Actual stored
|
||||
values are not necessarily stored in these units. To access the data in
|
||||
these units, multiply 'data' by 'conversion'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
CurrentClampSeries:
|
||||
name: CurrentClampSeries
|
||||
description: Voltage data from an intracellular current-clamp recording. A corresponding
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.image
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.image
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -16,22 +23,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: GrayscaleImage__Array
|
||||
tree_root: true
|
||||
GrayscaleImage__Array:
|
||||
name: GrayscaleImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
RGBImage:
|
||||
name: RGBImage
|
||||
description: A color image.
|
||||
|
|
@ -42,28 +34,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBImage__Array
|
||||
tree_root: true
|
||||
RGBImage__Array:
|
||||
name: RGBImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RGBAImage:
|
||||
name: RGBAImage
|
||||
description: A color image with transparency.
|
||||
|
|
@ -74,28 +45,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBAImage__Array
|
||||
tree_root: true
|
||||
RGBAImage__Array:
|
||||
name: RGBAImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageSeries:
|
||||
name: ImageSeries
|
||||
description: General image data that is common between acquisition and stimulus
|
||||
|
|
@ -115,12 +65,27 @@ classes:
|
|||
name: data
|
||||
description: Binary data representing images across frames.
|
||||
multivalued: false
|
||||
range: ImageSeries__data
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: z
|
||||
dimension:
|
||||
name: dimension
|
||||
description: Number of pixels on x, y, (and z) axes.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: rank
|
||||
range: int32
|
||||
required: false
|
||||
external_file:
|
||||
|
|
@ -130,8 +95,8 @@ classes:
|
|||
in the file system as one or more image file(s). This field should NOT be
|
||||
used if the image is stored in another NWB file and that file is linked
|
||||
to this file.
|
||||
multivalued: true
|
||||
range: text
|
||||
multivalued: false
|
||||
range: ImageSeries__external_file
|
||||
required: false
|
||||
format:
|
||||
name: format
|
||||
|
|
@ -143,40 +108,41 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
ImageSeries__data:
|
||||
name: ImageSeries__data
|
||||
description: Binary data representing images across frames.
|
||||
ImageSeries__external_file:
|
||||
name: ImageSeries__external_file
|
||||
description: Paths to one or more external file(s). The field is only present
|
||||
if format='external'. This is only relevant if the image series is stored in
|
||||
the file system as one or more image file(s). This field should NOT be used
|
||||
if the image is stored in another NWB file and that file is linked to this file.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
ifabsent: string(external_file)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
equals_string: external_file
|
||||
starting_frame:
|
||||
name: starting_frame
|
||||
description: Each external image may contain one or more consecutive frames
|
||||
of the full ImageSeries. This attribute serves as an index to indicate which
|
||||
frames each file contains, to faciliate random access. The 'starting_frame'
|
||||
attribute, hence, contains a list of frame numbers within the full ImageSeries
|
||||
of the first frame of each file listed in the parent 'external_file' dataset.
|
||||
Zero-based indexing is used (hence, the first element will always be zero).
|
||||
For example, if the 'external_file' dataset has three paths to files and
|
||||
the first file has 5 frames, the second file has 10 frames, and the third
|
||||
file has 20 frames, then this attribute will have values [0, 5, 15]. If
|
||||
there is a single external file that holds all of the frames of the ImageSeries
|
||||
(and so there is a single element in the 'external_file' dataset), then
|
||||
this attribute should have value [0].
|
||||
range: int32
|
||||
array:
|
||||
name: array
|
||||
range: ImageSeries__data__Array
|
||||
ImageSeries__data__Array:
|
||||
name: ImageSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
z:
|
||||
name: z
|
||||
range: numeric
|
||||
required: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_files
|
||||
range: text
|
||||
ImageMaskSeries:
|
||||
name: ImageMaskSeries
|
||||
description: An alpha mask that is applied to a presented visual stimulus. The
|
||||
|
|
@ -216,8 +182,17 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: OpticalSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height, depth
|
||||
exact_cardinality: 3
|
||||
orientation:
|
||||
name: orientation
|
||||
description: Description of image relative to some reference frame (e.g.,
|
||||
|
|
@ -226,36 +201,6 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
OpticalSeries__field_of_view:
|
||||
name: OpticalSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__field_of_view__Array
|
||||
OpticalSeries__field_of_view__Array:
|
||||
name: OpticalSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width, height:
|
||||
name: width, height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width, height, depth:
|
||||
name: width, height, depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
IndexSeries:
|
||||
name: IndexSeries
|
||||
description: Stores indices to image frames stored in an ImageSeries. The purpose
|
||||
|
|
@ -274,7 +219,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Index of the frame in the referenced ImageSeries.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int32
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.language
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: 'False'
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
description: Adapter objects to mimic the behavior of elements in the nwb-schema-language
|
||||
id: nwb.language
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.misc
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.misc
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -35,13 +42,19 @@ classes:
|
|||
feature_units:
|
||||
name: feature_units
|
||||
description: Units of each feature.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: false
|
||||
features:
|
||||
name: features
|
||||
description: Description of the features represented in TimeSeries::data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -64,19 +77,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AbstractFeatureSeries__data__Array
|
||||
AbstractFeatureSeries__data__Array:
|
||||
name: AbstractFeatureSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
AnnotationSeries:
|
||||
name: AnnotationSeries
|
||||
description: Stores user annotations made during an experiment. The data[] field
|
||||
|
|
@ -93,7 +102,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Annotations made during an experiment.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -116,7 +128,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Use values >0 if interval started, <0 if interval ended.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int8
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -169,23 +184,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: DecompositionSeries__data__Array
|
||||
DecompositionSeries__data__Array:
|
||||
name: DecompositionSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: true
|
||||
num_bands:
|
||||
name: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
DecompositionSeries__bands:
|
||||
name: DecompositionSeries__bands
|
||||
description: Table for describing the bands that this series was generated from.
|
||||
|
|
@ -209,33 +213,31 @@ classes:
|
|||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
multivalued: false
|
||||
range: DecompositionSeries__bands__band_limits
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
- alias: low, high
|
||||
exact_cardinality: 2
|
||||
range: float32
|
||||
required: true
|
||||
band_mean:
|
||||
name: band_mean
|
||||
description: The mean Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
band_stdev:
|
||||
name: band_stdev
|
||||
description: The standard deviation of Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
DecompositionSeries__bands__band_limits:
|
||||
name: DecompositionSeries__bands__band_limits
|
||||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(band_limits)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: band_limits
|
||||
Units:
|
||||
name: Units
|
||||
description: Data about spiking units. Event times of observed units (e.g. cell,
|
||||
|
|
@ -269,7 +271,12 @@ classes:
|
|||
name: obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
multivalued: false
|
||||
range: Units__obs_intervals
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_intervals
|
||||
- alias: start|end
|
||||
exact_cardinality: 2
|
||||
range: float64
|
||||
required: false
|
||||
electrodes_index:
|
||||
name: electrodes_index
|
||||
|
|
@ -292,14 +299,34 @@ classes:
|
|||
name: waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_mean
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_sd
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
tree_root: true
|
||||
Units__spike_times_index:
|
||||
name: Units__spike_times_index
|
||||
|
|
@ -345,18 +372,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals_index
|
||||
Units__obs_intervals:
|
||||
name: Units__obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(obs_intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals
|
||||
Units__electrodes_index:
|
||||
name: Units__electrodes_index
|
||||
description: Index into electrodes.
|
||||
|
|
@ -381,43 +396,3 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: electrodes
|
||||
Units__waveform_mean:
|
||||
name: Units__waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveform_sd:
|
||||
name: Units__waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ogen
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ogen
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -20,7 +27,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Applied power for optogenetic stimulus, in watts.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ophys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ophys
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -33,39 +40,18 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: TwoPhotonSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 3
|
||||
tree_root: true
|
||||
TwoPhotonSeries__field_of_view:
|
||||
name: TwoPhotonSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: TwoPhotonSeries__field_of_view__Array
|
||||
TwoPhotonSeries__field_of_view__Array:
|
||||
name: TwoPhotonSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width|height:
|
||||
name: width|height
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width|height|depth:
|
||||
name: width|height|depth
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RoiResponseSeries:
|
||||
name: RoiResponseSeries
|
||||
description: ROI responses over an imaging plane. The first dimension represents
|
||||
|
|
@ -81,8 +67,16 @@ classes:
|
|||
name: data
|
||||
description: Signals from ROIs.
|
||||
multivalued: false
|
||||
range: RoiResponseSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_ROIs
|
||||
rois:
|
||||
name: rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -91,32 +85,6 @@ classes:
|
|||
range: RoiResponseSeries__rois
|
||||
required: true
|
||||
tree_root: true
|
||||
RoiResponseSeries__data:
|
||||
name: RoiResponseSeries__data
|
||||
description: Signals from ROIs.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: RoiResponseSeries__data__Array
|
||||
RoiResponseSeries__data__Array:
|
||||
name: RoiResponseSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_ROIs:
|
||||
name: num_ROIs
|
||||
range: numeric
|
||||
required: false
|
||||
RoiResponseSeries__rois:
|
||||
name: RoiResponseSeries__rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -137,12 +105,13 @@ classes:
|
|||
for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
Fluorescence:
|
||||
name: Fluorescence
|
||||
|
|
@ -151,12 +120,13 @@ classes:
|
|||
for ROIs and for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
ImageSegmentation:
|
||||
name: ImageSegmentation
|
||||
|
|
@ -169,12 +139,13 @@ classes:
|
|||
is required and ROI names should remain consistent between them.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
ImagingPlane:
|
||||
name: ImagingPlane
|
||||
|
|
@ -302,29 +273,21 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingPlane__manifold__Array
|
||||
ImagingPlane__manifold__Array:
|
||||
name: ImagingPlane__manifold__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
height:
|
||||
name: height
|
||||
range: float32
|
||||
required: true
|
||||
width:
|
||||
name: width
|
||||
range: float32
|
||||
required: true
|
||||
x, y, z:
|
||||
name: x, y, z
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
depth:
|
||||
name: depth
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: height
|
||||
- alias: width
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: height
|
||||
- alias: width
|
||||
- alias: depth
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
ImagingPlane__origin_coords:
|
||||
name: ImagingPlane__origin_coords
|
||||
description: Physical location of the first element of the imaging plane (0, 0)
|
||||
|
|
@ -344,23 +307,13 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingPlane__origin_coords__Array
|
||||
ImagingPlane__origin_coords__Array:
|
||||
name: ImagingPlane__origin_coords__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x, y:
|
||||
name: x, y
|
||||
array:
|
||||
dimensions:
|
||||
- alias: x, y
|
||||
exact_cardinality: 2
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
x, y, z:
|
||||
name: x, y, z
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
ImagingPlane__grid_spacing:
|
||||
name: ImagingPlane__grid_spacing
|
||||
description: Space between pixels in (x, y) or voxels in (x, y, z) directions,
|
||||
|
|
@ -380,23 +333,13 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingPlane__grid_spacing__Array
|
||||
ImagingPlane__grid_spacing__Array:
|
||||
name: ImagingPlane__grid_spacing__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x, y:
|
||||
name: x, y
|
||||
array:
|
||||
dimensions:
|
||||
- alias: x, y
|
||||
exact_cardinality: 2
|
||||
- alias: x, y, z
|
||||
exact_cardinality: 3
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
x, y, z:
|
||||
name: x, y, z
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
OpticalChannel:
|
||||
name: OpticalChannel
|
||||
description: An optical channel used to record from an imaging plane.
|
||||
|
|
@ -426,10 +369,11 @@ classes:
|
|||
frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.retinotopy
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.retinotopy
|
||||
version: 2.2.1
|
||||
imports:
|
||||
|
|
@ -28,20 +35,12 @@ classes:
|
|||
range: float32
|
||||
array:
|
||||
name: array
|
||||
range: RetinotopyMap__Array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
tree_root: true
|
||||
RetinotopyMap__Array:
|
||||
name: RetinotopyMap__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
AxisMap:
|
||||
name: AxisMap
|
||||
description: Abstract two-dimensional map of responses to stimuli along a single
|
||||
|
|
@ -59,20 +58,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AxisMap__Array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
tree_root: true
|
||||
AxisMap__Array:
|
||||
name: AxisMap__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
RetinotopyImage:
|
||||
name: RetinotopyImage
|
||||
description: 'Gray-scale image related to retinotopic mapping. Array structure:
|
||||
|
|
@ -155,7 +146,11 @@ classes:
|
|||
description: Two-element array describing the contents of the two response
|
||||
axis fields. Description should be something like ['altitude', 'azimuth']
|
||||
or '['radius', 'theta'].
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_axes
|
||||
exact_cardinality: 2
|
||||
range: text
|
||||
required: true
|
||||
focal_depth_image:
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
name: core
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: true
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: 'True'
|
||||
value: core
|
||||
description: NWB namespace
|
||||
id: core
|
||||
version: 2.2.1
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -39,32 +46,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
NWBContainer:
|
||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
|
||||
|
|
@ -130,7 +130,10 @@ classes:
|
|||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: false
|
||||
control:
|
||||
|
|
@ -138,7 +141,10 @@ classes:
|
|||
description: Numerical labels that apply to each time point in data for the
|
||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: uint8
|
||||
required: false
|
||||
control_description:
|
||||
|
|
@ -146,7 +152,10 @@ classes:
|
|||
description: Description of each control value. Must be present if control
|
||||
is present. If present, control_description[0] should describe time points
|
||||
where control == 0.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
|
||||
sync:
|
||||
|
|
@ -201,27 +210,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
|
||||
|
|
@ -268,13 +276,14 @@ classes:
|
|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -59,19 +66,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
|
||||
|
|
@ -88,12 +91,13 @@ classes:
|
|||
events. BehavioralTimeSeries is for continuous data.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
tree_root: true
|
||||
BehavioralEvents:
|
||||
name: BehavioralEvents
|
||||
|
|
@ -101,12 +105,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
|
||||
name: BehavioralTimeSeries
|
||||
|
|
@ -114,36 +119,39 @@ classes:
|
|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -154,22 +162,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.device
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.device
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ecephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ecephys
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -25,8 +32,21 @@ classes:
|
|||
name: data
|
||||
description: Recorded voltage data.
|
||||
multivalued: false
|
||||
range: ElectricalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
electrodes:
|
||||
name: electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -45,47 +65,13 @@ classes:
|
|||
as native values generated by data acquisition systems. If this dataset
|
||||
is not present, then there is no channel-specific conversion factor, i.e.
|
||||
it is 1 for all channels.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_channels
|
||||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
ElectricalSeries__data:
|
||||
name: ElectricalSeries__data
|
||||
description: Recorded voltage data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. This value
|
||||
is fixed to 'volts'. Actual stored values are not necessarily stored in
|
||||
these units. To access the data in these units, multiply 'data' by 'conversion'
|
||||
and 'channel_conversion' (if present).
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ElectricalSeries__data__Array
|
||||
ElectricalSeries__data__Array:
|
||||
name: ElectricalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
ElectricalSeries__electrodes:
|
||||
name: ElectricalSeries__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -120,52 +106,31 @@ classes:
|
|||
name: data
|
||||
description: Spike waveforms.
|
||||
multivalued: false
|
||||
range: SpikeEventSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
timestamps:
|
||||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
Timestamps are required for the events. Unlike for TimeSeries, timestamps
|
||||
are required for SpikeEventSeries and are thus re-specified here.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
SpikeEventSeries__data:
|
||||
name: SpikeEventSeries__data
|
||||
description: Spike waveforms.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement for waveforms, which is fixed to 'volts'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpikeEventSeries__data__Array
|
||||
SpikeEventSeries__data__Array:
|
||||
name: SpikeEventSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: numeric
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
FeatureExtraction:
|
||||
name: FeatureExtraction
|
||||
description: Features, such as PC1 and PC2, that are extracted from signals stored
|
||||
|
|
@ -181,19 +146,30 @@ classes:
|
|||
name: description
|
||||
description: Description of features (eg, ''PC1'') for each of the extracted
|
||||
features.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
features:
|
||||
name: features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
multivalued: false
|
||||
range: FeatureExtraction__features
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_features
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of events that features correspond to (can be a link).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
electrodes:
|
||||
|
|
@ -204,36 +180,6 @@ classes:
|
|||
range: FeatureExtraction__electrodes
|
||||
required: true
|
||||
tree_root: true
|
||||
FeatureExtraction__features:
|
||||
name: FeatureExtraction__features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(features)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: features
|
||||
array:
|
||||
name: array
|
||||
range: FeatureExtraction__features__Array
|
||||
FeatureExtraction__features__Array:
|
||||
name: FeatureExtraction__features__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: float32
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: float32
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: float32
|
||||
required: true
|
||||
FeatureExtraction__electrodes:
|
||||
name: FeatureExtraction__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -270,13 +216,19 @@ classes:
|
|||
corresponding to time of event. ''description'' should define what is meant
|
||||
by time of event (e.g., .25 ms before action potential peak, zero-crossing
|
||||
time, etc). The index points to each event from the raw data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Timestamps of events, in seconds.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -287,12 +239,13 @@ classes:
|
|||
during experiment acquisition.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
tree_root: true
|
||||
FilteredEphys:
|
||||
name: FilteredEphys
|
||||
|
|
@ -309,12 +262,13 @@ classes:
|
|||
the ElectricalSeries.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
LFP:
|
||||
name: LFP
|
||||
|
|
@ -323,12 +277,13 @@ classes:
|
|||
properties should be noted in the ElectricalSeries description or comments field.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
ElectrodeGroup:
|
||||
name: ElectrodeGroup
|
||||
|
|
@ -385,72 +340,24 @@ classes:
|
|||
3 is in array slot [3]). Waveforms corresponding to gaps in cluster sequence
|
||||
should be empty (e.g., zero- filled)
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_mean
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as
|
||||
in mean
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_sd
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
tree_root: true
|
||||
ClusterWaveforms__waveform_mean:
|
||||
name: ClusterWaveforms__waveform_mean
|
||||
description: The mean waveform for each cluster, using the same indices for each
|
||||
wave as cluster numbers in the associated Clustering module (i.e, cluster 3
|
||||
is in array slot [3]). Waveforms corresponding to gaps in cluster sequence should
|
||||
be empty (e.g., zero- filled)
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_mean__Array
|
||||
ClusterWaveforms__waveform_mean__Array:
|
||||
name: ClusterWaveforms__waveform_mean__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
ClusterWaveforms__waveform_sd:
|
||||
name: ClusterWaveforms__waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as in
|
||||
mean
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_sd__Array
|
||||
ClusterWaveforms__waveform_sd__Array:
|
||||
name: ClusterWaveforms__waveform_sd__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
Clustering:
|
||||
name: Clustering
|
||||
description: DEPRECATED Clustered spike data, whether from automatic clustering
|
||||
|
|
@ -472,21 +379,30 @@ classes:
|
|||
num:
|
||||
name: num
|
||||
description: Cluster number of each event
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
peak_over_rms:
|
||||
name: peak_over_rms
|
||||
description: Maximum ratio of waveform peak to RMS on any channel in the cluster
|
||||
(provides a basic clustering metric).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of clustered events, in seconds. This may be a link to
|
||||
times field in associated FeatureExtraction module.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.epoch
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.epoch
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.file
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.file
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -41,7 +48,10 @@ classes:
|
|||
The file can be created after the experiment was run, so this may differ
|
||||
from the experiment start time. Each modification to the nwb file adds a
|
||||
new entry to the array.'
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_modifications
|
||||
range: isodatetime
|
||||
required: true
|
||||
identifier:
|
||||
|
|
@ -183,9 +193,14 @@ classes:
|
|||
having a particular scientific goal, trials (see trials subgroup) during
|
||||
an experiment, or epochs (see epochs subgroup) deriving from analysis of
|
||||
data.
|
||||
multivalued: false
|
||||
range: NWBFile__intervals
|
||||
required: false
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
units:
|
||||
name: units
|
||||
description: Data about sorted spike units.
|
||||
|
|
@ -274,7 +289,10 @@ classes:
|
|||
name: experimenter
|
||||
description: Name of person(s) who performed the experiment. Can also specify
|
||||
roles of different people involved.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_experimenters
|
||||
range: text
|
||||
required: false
|
||||
institution:
|
||||
|
|
@ -286,7 +304,10 @@ classes:
|
|||
keywords:
|
||||
name: keywords
|
||||
description: Terms to search over.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_keywords
|
||||
range: text
|
||||
required: false
|
||||
lab:
|
||||
|
|
@ -318,7 +339,10 @@ classes:
|
|||
related_publications:
|
||||
name: related_publications
|
||||
description: Publication information. PMID, DOI, URL, etc.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_publications
|
||||
range: text
|
||||
required: false
|
||||
session_id:
|
||||
|
|
@ -622,42 +646,3 @@ classes:
|
|||
multivalued: false
|
||||
range: SweepTable
|
||||
required: false
|
||||
NWBFile__intervals:
|
||||
name: NWBFile__intervals
|
||||
description: Experimental intervals, whether that be logically distinct sub-experiments
|
||||
having a particular scientific goal, trials (see trials subgroup) during an
|
||||
experiment, or epochs (see epochs subgroup) deriving from analysis of data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: intervals
|
||||
epochs:
|
||||
name: epochs
|
||||
description: Divisions in time marking experimental stages or sub-divisions
|
||||
of a single recording session.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
trials:
|
||||
name: trials
|
||||
description: Repeated experimental events that have a logical grouping.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
invalid_times:
|
||||
name: invalid_times
|
||||
description: Time intervals that should be removed from analysis.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
time_intervals:
|
||||
name: time_intervals
|
||||
description: Optional additional table(s) for describing other experimental
|
||||
time intervals.
|
||||
multivalued: true
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.icephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.icephys
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -30,8 +37,8 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Recorded voltage or current.
|
||||
multivalued: true
|
||||
range: numeric
|
||||
multivalued: false
|
||||
range: PatchClampSeries__data
|
||||
required: true
|
||||
gain:
|
||||
name: gain
|
||||
|
|
@ -41,6 +48,29 @@ classes:
|
|||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
PatchClampSeries__data:
|
||||
name: PatchClampSeries__data
|
||||
description: Recorded voltage or current.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. Actual stored
|
||||
values are not necessarily stored in these units. To access the data in
|
||||
these units, multiply 'data' by 'conversion'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
CurrentClampSeries:
|
||||
name: CurrentClampSeries
|
||||
description: Voltage data from an intracellular current-clamp recording. A corresponding
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.image
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.image
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -16,22 +23,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: GrayscaleImage__Array
|
||||
tree_root: true
|
||||
GrayscaleImage__Array:
|
||||
name: GrayscaleImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
RGBImage:
|
||||
name: RGBImage
|
||||
description: A color image.
|
||||
|
|
@ -42,28 +34,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBImage__Array
|
||||
tree_root: true
|
||||
RGBImage__Array:
|
||||
name: RGBImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RGBAImage:
|
||||
name: RGBAImage
|
||||
description: A color image with transparency.
|
||||
|
|
@ -74,28 +45,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBAImage__Array
|
||||
tree_root: true
|
||||
RGBAImage__Array:
|
||||
name: RGBAImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageSeries:
|
||||
name: ImageSeries
|
||||
description: General image data that is common between acquisition and stimulus
|
||||
|
|
@ -115,12 +65,27 @@ classes:
|
|||
name: data
|
||||
description: Binary data representing images across frames.
|
||||
multivalued: false
|
||||
range: ImageSeries__data
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: z
|
||||
dimension:
|
||||
name: dimension
|
||||
description: Number of pixels on x, y, (and z) axes.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: rank
|
||||
range: int32
|
||||
required: false
|
||||
external_file:
|
||||
|
|
@ -130,8 +95,8 @@ classes:
|
|||
in the file system as one or more image file(s). This field should NOT be
|
||||
used if the image is stored in another NWB file and that file is linked
|
||||
to this file.
|
||||
multivalued: true
|
||||
range: text
|
||||
multivalued: false
|
||||
range: ImageSeries__external_file
|
||||
required: false
|
||||
format:
|
||||
name: format
|
||||
|
|
@ -143,40 +108,41 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
ImageSeries__data:
|
||||
name: ImageSeries__data
|
||||
description: Binary data representing images across frames.
|
||||
ImageSeries__external_file:
|
||||
name: ImageSeries__external_file
|
||||
description: Paths to one or more external file(s). The field is only present
|
||||
if format='external'. This is only relevant if the image series is stored in
|
||||
the file system as one or more image file(s). This field should NOT be used
|
||||
if the image is stored in another NWB file and that file is linked to this file.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
ifabsent: string(external_file)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
equals_string: external_file
|
||||
starting_frame:
|
||||
name: starting_frame
|
||||
description: Each external image may contain one or more consecutive frames
|
||||
of the full ImageSeries. This attribute serves as an index to indicate which
|
||||
frames each file contains, to faciliate random access. The 'starting_frame'
|
||||
attribute, hence, contains a list of frame numbers within the full ImageSeries
|
||||
of the first frame of each file listed in the parent 'external_file' dataset.
|
||||
Zero-based indexing is used (hence, the first element will always be zero).
|
||||
For example, if the 'external_file' dataset has three paths to files and
|
||||
the first file has 5 frames, the second file has 10 frames, and the third
|
||||
file has 20 frames, then this attribute will have values [0, 5, 15]. If
|
||||
there is a single external file that holds all of the frames of the ImageSeries
|
||||
(and so there is a single element in the 'external_file' dataset), then
|
||||
this attribute should have value [0].
|
||||
range: int32
|
||||
array:
|
||||
name: array
|
||||
range: ImageSeries__data__Array
|
||||
ImageSeries__data__Array:
|
||||
name: ImageSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
z:
|
||||
name: z
|
||||
range: numeric
|
||||
required: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_files
|
||||
range: text
|
||||
ImageMaskSeries:
|
||||
name: ImageMaskSeries
|
||||
description: An alpha mask that is applied to a presented visual stimulus. The
|
||||
|
|
@ -216,14 +182,36 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: OpticalSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height, depth
|
||||
exact_cardinality: 3
|
||||
data:
|
||||
name: data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
multivalued: false
|
||||
range: OpticalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
orientation:
|
||||
name: orientation
|
||||
description: Description of image relative to some reference frame (e.g.,
|
||||
|
|
@ -232,72 +220,6 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
OpticalSeries__field_of_view:
|
||||
name: OpticalSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__field_of_view__Array
|
||||
OpticalSeries__field_of_view__Array:
|
||||
name: OpticalSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width, height:
|
||||
name: width, height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width, height, depth:
|
||||
name: width, height, depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
OpticalSeries__data:
|
||||
name: OpticalSeries__data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__data__Array
|
||||
OpticalSeries__data__Array:
|
||||
name: OpticalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
IndexSeries:
|
||||
name: IndexSeries
|
||||
description: Stores indices to image frames stored in an ImageSeries. The purpose
|
||||
|
|
@ -316,7 +238,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Index of the frame in the referenced ImageSeries.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int32
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.language
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: 'False'
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
description: Adapter objects to mimic the behavior of elements in the nwb-schema-language
|
||||
id: nwb.language
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.misc
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.misc
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -35,13 +42,19 @@ classes:
|
|||
feature_units:
|
||||
name: feature_units
|
||||
description: Units of each feature.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: false
|
||||
features:
|
||||
name: features
|
||||
description: Description of the features represented in TimeSeries::data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -64,19 +77,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AbstractFeatureSeries__data__Array
|
||||
AbstractFeatureSeries__data__Array:
|
||||
name: AbstractFeatureSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
AnnotationSeries:
|
||||
name: AnnotationSeries
|
||||
description: Stores user annotations made during an experiment. The data[] field
|
||||
|
|
@ -93,7 +102,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Annotations made during an experiment.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -116,7 +128,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Use values >0 if interval started, <0 if interval ended.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int8
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -169,23 +184,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: DecompositionSeries__data__Array
|
||||
DecompositionSeries__data__Array:
|
||||
name: DecompositionSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: true
|
||||
num_bands:
|
||||
name: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
DecompositionSeries__bands:
|
||||
name: DecompositionSeries__bands
|
||||
description: Table for describing the bands that this series was generated from.
|
||||
|
|
@ -209,33 +213,31 @@ classes:
|
|||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
multivalued: false
|
||||
range: DecompositionSeries__bands__band_limits
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
- alias: low, high
|
||||
exact_cardinality: 2
|
||||
range: float32
|
||||
required: true
|
||||
band_mean:
|
||||
name: band_mean
|
||||
description: The mean Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
band_stdev:
|
||||
name: band_stdev
|
||||
description: The standard deviation of Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
DecompositionSeries__bands__band_limits:
|
||||
name: DecompositionSeries__bands__band_limits
|
||||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(band_limits)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: band_limits
|
||||
Units:
|
||||
name: Units
|
||||
description: Data about spiking units. Event times of observed units (e.g. cell,
|
||||
|
|
@ -269,7 +271,12 @@ classes:
|
|||
name: obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
multivalued: false
|
||||
range: Units__obs_intervals
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_intervals
|
||||
- alias: start|end
|
||||
exact_cardinality: 2
|
||||
range: float64
|
||||
required: false
|
||||
electrodes_index:
|
||||
name: electrodes_index
|
||||
|
|
@ -292,14 +299,34 @@ classes:
|
|||
name: waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_mean
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_sd
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
tree_root: true
|
||||
Units__spike_times_index:
|
||||
name: Units__spike_times_index
|
||||
|
|
@ -345,18 +372,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals_index
|
||||
Units__obs_intervals:
|
||||
name: Units__obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(obs_intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals
|
||||
Units__electrodes_index:
|
||||
name: Units__electrodes_index
|
||||
description: Index into electrodes.
|
||||
|
|
@ -381,43 +396,3 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: electrodes
|
||||
Units__waveform_mean:
|
||||
name: Units__waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveform_sd:
|
||||
name: Units__waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ogen
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ogen
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -20,7 +27,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Applied power for optogenetic stimulus, in watts.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ophys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ophys
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -33,39 +40,18 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: TwoPhotonSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 3
|
||||
tree_root: true
|
||||
TwoPhotonSeries__field_of_view:
|
||||
name: TwoPhotonSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: TwoPhotonSeries__field_of_view__Array
|
||||
TwoPhotonSeries__field_of_view__Array:
|
||||
name: TwoPhotonSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width|height:
|
||||
name: width|height
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width|height|depth:
|
||||
name: width|height|depth
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RoiResponseSeries:
|
||||
name: RoiResponseSeries
|
||||
description: ROI responses over an imaging plane. The first dimension represents
|
||||
|
|
@ -81,8 +67,16 @@ classes:
|
|||
name: data
|
||||
description: Signals from ROIs.
|
||||
multivalued: false
|
||||
range: RoiResponseSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_ROIs
|
||||
rois:
|
||||
name: rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -91,32 +85,6 @@ classes:
|
|||
range: RoiResponseSeries__rois
|
||||
required: true
|
||||
tree_root: true
|
||||
RoiResponseSeries__data:
|
||||
name: RoiResponseSeries__data
|
||||
description: Signals from ROIs.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: RoiResponseSeries__data__Array
|
||||
RoiResponseSeries__data__Array:
|
||||
name: RoiResponseSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_ROIs:
|
||||
name: num_ROIs
|
||||
range: numeric
|
||||
required: false
|
||||
RoiResponseSeries__rois:
|
||||
name: RoiResponseSeries__rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -137,12 +105,13 @@ classes:
|
|||
for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
Fluorescence:
|
||||
name: Fluorescence
|
||||
|
|
@ -151,12 +120,13 @@ classes:
|
|||
for ROIs and for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
ImageSegmentation:
|
||||
name: ImageSegmentation
|
||||
|
|
@ -169,24 +139,26 @@ classes:
|
|||
is required and ROI names should remain consistent between them.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
ImagingPlane:
|
||||
name: ImagingPlane
|
||||
description: An imaging plane and its metadata.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBContainer
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBContainer
|
||||
tree_root: true
|
||||
MotionCorrection:
|
||||
name: MotionCorrection
|
||||
|
|
@ -195,10 +167,11 @@ classes:
|
|||
frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.retinotopy
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.retinotopy
|
||||
version: 2.2.2
|
||||
imports:
|
||||
|
|
@ -55,7 +62,11 @@ classes:
|
|||
description: Two-element array describing the contents of the two response
|
||||
axis fields. Description should be something like ['altitude', 'azimuth']
|
||||
or '['radius', 'theta'].
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: axis_1, axis_2
|
||||
exact_cardinality: 2
|
||||
range: text
|
||||
required: true
|
||||
focal_depth_image:
|
||||
|
|
@ -106,19 +117,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
ImagingRetinotopy__axis_1_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_1_power_map:
|
||||
name: ImagingRetinotopy__axis_1_power_map
|
||||
description: Power response on the first measured axis. Response is scaled so
|
||||
|
|
@ -146,19 +149,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_power_map__Array
|
||||
ImagingRetinotopy__axis_1_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_phase_map:
|
||||
name: ImagingRetinotopy__axis_2_phase_map
|
||||
description: Phase response to stimulus on the second measured axis.
|
||||
|
|
@ -185,19 +180,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
ImagingRetinotopy__axis_2_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_power_map:
|
||||
name: ImagingRetinotopy__axis_2_power_map
|
||||
description: Power response on the second measured axis. Response is scaled so
|
||||
|
|
@ -225,19 +212,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_power_map__Array
|
||||
ImagingRetinotopy__axis_2_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__focal_depth_image:
|
||||
name: ImagingRetinotopy__focal_depth_image
|
||||
description: 'Gray-scale image taken with same settings/parameters (e.g., focal
|
||||
|
|
@ -274,19 +253,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__focal_depth_image__Array
|
||||
ImagingRetinotopy__focal_depth_image__Array:
|
||||
name: ImagingRetinotopy__focal_depth_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
ImagingRetinotopy__sign_map:
|
||||
name: ImagingRetinotopy__sign_map
|
||||
description: Sine of the angle between the direction of the gradient in axis_1
|
||||
|
|
@ -310,19 +281,11 @@ classes:
|
|||
range: float32
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__sign_map__Array
|
||||
ImagingRetinotopy__sign_map__Array:
|
||||
name: ImagingRetinotopy__sign_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__vasculature_image:
|
||||
name: ImagingRetinotopy__vasculature_image
|
||||
description: 'Gray-scale anatomical image of cortical surface. Array structure:
|
||||
|
|
@ -355,16 +318,8 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__vasculature_image__Array
|
||||
ImagingRetinotopy__vasculature_image__Array:
|
||||
name: ImagingRetinotopy__vasculature_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
name: core
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: true
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: 'True'
|
||||
value: core
|
||||
description: NWB namespace
|
||||
id: core
|
||||
version: 2.2.2
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -39,32 +46,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
NWBContainer:
|
||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
|
||||
|
|
@ -130,7 +130,10 @@ classes:
|
|||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: false
|
||||
control:
|
||||
|
|
@ -138,7 +141,10 @@ classes:
|
|||
description: Numerical labels that apply to each time point in data for the
|
||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: uint8
|
||||
required: false
|
||||
control_description:
|
||||
|
|
@ -146,7 +152,10 @@ classes:
|
|||
description: Description of each control value. Must be present if control
|
||||
is present. If present, control_description[0] should describe time points
|
||||
where control == 0.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
|
||||
sync:
|
||||
|
|
@ -201,27 +210,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
|
||||
|
|
@ -268,13 +276,14 @@ classes:
|
|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -59,19 +66,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
|
||||
|
|
@ -88,12 +91,13 @@ classes:
|
|||
events. BehavioralTimeSeries is for continuous data.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
tree_root: true
|
||||
BehavioralEvents:
|
||||
name: BehavioralEvents
|
||||
|
|
@ -101,12 +105,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
|
||||
name: BehavioralTimeSeries
|
||||
|
|
@ -114,36 +119,39 @@ classes:
|
|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -154,22 +162,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.device
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.device
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ecephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ecephys
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -25,8 +32,21 @@ classes:
|
|||
name: data
|
||||
description: Recorded voltage data.
|
||||
multivalued: false
|
||||
range: ElectricalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
electrodes:
|
||||
name: electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -45,47 +65,13 @@ classes:
|
|||
as native values generated by data acquisition systems. If this dataset
|
||||
is not present, then there is no channel-specific conversion factor, i.e.
|
||||
it is 1 for all channels.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_channels
|
||||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
ElectricalSeries__data:
|
||||
name: ElectricalSeries__data
|
||||
description: Recorded voltage data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. This value
|
||||
is fixed to 'volts'. Actual stored values are not necessarily stored in
|
||||
these units. To access the data in these units, multiply 'data' by 'conversion'
|
||||
and 'channel_conversion' (if present).
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ElectricalSeries__data__Array
|
||||
ElectricalSeries__data__Array:
|
||||
name: ElectricalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
ElectricalSeries__electrodes:
|
||||
name: ElectricalSeries__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -120,52 +106,31 @@ classes:
|
|||
name: data
|
||||
description: Spike waveforms.
|
||||
multivalued: false
|
||||
range: SpikeEventSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
timestamps:
|
||||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
Timestamps are required for the events. Unlike for TimeSeries, timestamps
|
||||
are required for SpikeEventSeries and are thus re-specified here.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
SpikeEventSeries__data:
|
||||
name: SpikeEventSeries__data
|
||||
description: Spike waveforms.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement for waveforms, which is fixed to 'volts'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpikeEventSeries__data__Array
|
||||
SpikeEventSeries__data__Array:
|
||||
name: SpikeEventSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: numeric
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
FeatureExtraction:
|
||||
name: FeatureExtraction
|
||||
description: Features, such as PC1 and PC2, that are extracted from signals stored
|
||||
|
|
@ -181,19 +146,30 @@ classes:
|
|||
name: description
|
||||
description: Description of features (eg, ''PC1'') for each of the extracted
|
||||
features.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
features:
|
||||
name: features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
multivalued: false
|
||||
range: FeatureExtraction__features
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_features
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of events that features correspond to (can be a link).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
electrodes:
|
||||
|
|
@ -204,36 +180,6 @@ classes:
|
|||
range: FeatureExtraction__electrodes
|
||||
required: true
|
||||
tree_root: true
|
||||
FeatureExtraction__features:
|
||||
name: FeatureExtraction__features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(features)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: features
|
||||
array:
|
||||
name: array
|
||||
range: FeatureExtraction__features__Array
|
||||
FeatureExtraction__features__Array:
|
||||
name: FeatureExtraction__features__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: float32
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: float32
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: float32
|
||||
required: true
|
||||
FeatureExtraction__electrodes:
|
||||
name: FeatureExtraction__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -270,13 +216,19 @@ classes:
|
|||
corresponding to time of event. ''description'' should define what is meant
|
||||
by time of event (e.g., .25 ms before action potential peak, zero-crossing
|
||||
time, etc). The index points to each event from the raw data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Timestamps of events, in seconds.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -287,12 +239,13 @@ classes:
|
|||
during experiment acquisition.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
tree_root: true
|
||||
FilteredEphys:
|
||||
name: FilteredEphys
|
||||
|
|
@ -309,12 +262,13 @@ classes:
|
|||
the ElectricalSeries.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
LFP:
|
||||
name: LFP
|
||||
|
|
@ -323,12 +277,13 @@ classes:
|
|||
properties should be noted in the ElectricalSeries description or comments field.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
ElectrodeGroup:
|
||||
name: ElectrodeGroup
|
||||
|
|
@ -385,72 +340,24 @@ classes:
|
|||
3 is in array slot [3]). Waveforms corresponding to gaps in cluster sequence
|
||||
should be empty (e.g., zero- filled)
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_mean
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as
|
||||
in mean
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_sd
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
tree_root: true
|
||||
ClusterWaveforms__waveform_mean:
|
||||
name: ClusterWaveforms__waveform_mean
|
||||
description: The mean waveform for each cluster, using the same indices for each
|
||||
wave as cluster numbers in the associated Clustering module (i.e, cluster 3
|
||||
is in array slot [3]). Waveforms corresponding to gaps in cluster sequence should
|
||||
be empty (e.g., zero- filled)
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_mean__Array
|
||||
ClusterWaveforms__waveform_mean__Array:
|
||||
name: ClusterWaveforms__waveform_mean__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
ClusterWaveforms__waveform_sd:
|
||||
name: ClusterWaveforms__waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as in
|
||||
mean
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_sd__Array
|
||||
ClusterWaveforms__waveform_sd__Array:
|
||||
name: ClusterWaveforms__waveform_sd__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
Clustering:
|
||||
name: Clustering
|
||||
description: DEPRECATED Clustered spike data, whether from automatic clustering
|
||||
|
|
@ -472,21 +379,30 @@ classes:
|
|||
num:
|
||||
name: num
|
||||
description: Cluster number of each event
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
peak_over_rms:
|
||||
name: peak_over_rms
|
||||
description: Maximum ratio of waveform peak to RMS on any channel in the cluster
|
||||
(provides a basic clustering metric).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of clustered events, in seconds. This may be a link to
|
||||
times field in associated FeatureExtraction module.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.epoch
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.epoch
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.file
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.file
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -56,7 +63,10 @@ classes:
|
|||
The file can be created after the experiment was run, so this may differ
|
||||
from the experiment start time. Each modification to the nwb file adds a
|
||||
new entry to the array.'
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_modifications
|
||||
range: isodatetime
|
||||
required: true
|
||||
identifier:
|
||||
|
|
@ -198,9 +208,14 @@ classes:
|
|||
having a particular scientific goal, trials (see trials subgroup) during
|
||||
an experiment, or epochs (see epochs subgroup) deriving from analysis of
|
||||
data.
|
||||
multivalued: false
|
||||
range: NWBFile__intervals
|
||||
required: false
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
units:
|
||||
name: units
|
||||
description: Data about sorted spike units.
|
||||
|
|
@ -289,7 +304,10 @@ classes:
|
|||
name: experimenter
|
||||
description: Name of person(s) who performed the experiment. Can also specify
|
||||
roles of different people involved.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_experimenters
|
||||
range: text
|
||||
required: false
|
||||
institution:
|
||||
|
|
@ -301,7 +319,10 @@ classes:
|
|||
keywords:
|
||||
name: keywords
|
||||
description: Terms to search over.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_keywords
|
||||
range: text
|
||||
required: false
|
||||
lab:
|
||||
|
|
@ -333,7 +354,10 @@ classes:
|
|||
related_publications:
|
||||
name: related_publications
|
||||
description: Publication information. PMID, DOI, URL, etc.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_publications
|
||||
range: text
|
||||
required: false
|
||||
session_id:
|
||||
|
|
@ -575,45 +599,6 @@ classes:
|
|||
multivalued: false
|
||||
range: SweepTable
|
||||
required: false
|
||||
NWBFile__intervals:
|
||||
name: NWBFile__intervals
|
||||
description: Experimental intervals, whether that be logically distinct sub-experiments
|
||||
having a particular scientific goal, trials (see trials subgroup) during an
|
||||
experiment, or epochs (see epochs subgroup) deriving from analysis of data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: intervals
|
||||
epochs:
|
||||
name: epochs
|
||||
description: Divisions in time marking experimental stages or sub-divisions
|
||||
of a single recording session.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
trials:
|
||||
name: trials
|
||||
description: Repeated experimental events that have a logical grouping.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
invalid_times:
|
||||
name: invalid_times
|
||||
description: Time intervals that should be removed from analysis.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
time_intervals:
|
||||
name: time_intervals
|
||||
description: Optional additional table(s) for describing other experimental
|
||||
time intervals.
|
||||
multivalued: true
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
LabMetaData:
|
||||
name: LabMetaData
|
||||
description: Lab-specific meta-data.
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.icephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.icephys
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -30,8 +37,8 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Recorded voltage or current.
|
||||
multivalued: true
|
||||
range: numeric
|
||||
multivalued: false
|
||||
range: PatchClampSeries__data
|
||||
required: true
|
||||
gain:
|
||||
name: gain
|
||||
|
|
@ -41,6 +48,29 @@ classes:
|
|||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
PatchClampSeries__data:
|
||||
name: PatchClampSeries__data
|
||||
description: Recorded voltage or current.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. Actual stored
|
||||
values are not necessarily stored in these units. To access the data in
|
||||
these units, multiply 'data' by 'conversion'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
CurrentClampSeries:
|
||||
name: CurrentClampSeries
|
||||
description: Voltage data from an intracellular current-clamp recording. A corresponding
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.image
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.image
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -16,22 +23,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: GrayscaleImage__Array
|
||||
tree_root: true
|
||||
GrayscaleImage__Array:
|
||||
name: GrayscaleImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
RGBImage:
|
||||
name: RGBImage
|
||||
description: A color image.
|
||||
|
|
@ -42,28 +34,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBImage__Array
|
||||
tree_root: true
|
||||
RGBImage__Array:
|
||||
name: RGBImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RGBAImage:
|
||||
name: RGBAImage
|
||||
description: A color image with transparency.
|
||||
|
|
@ -74,28 +45,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBAImage__Array
|
||||
tree_root: true
|
||||
RGBAImage__Array:
|
||||
name: RGBAImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageSeries:
|
||||
name: ImageSeries
|
||||
description: General image data that is common between acquisition and stimulus
|
||||
|
|
@ -115,12 +65,27 @@ classes:
|
|||
name: data
|
||||
description: Binary data representing images across frames.
|
||||
multivalued: false
|
||||
range: ImageSeries__data
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: z
|
||||
dimension:
|
||||
name: dimension
|
||||
description: Number of pixels on x, y, (and z) axes.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: rank
|
||||
range: int32
|
||||
required: false
|
||||
external_file:
|
||||
|
|
@ -130,8 +95,8 @@ classes:
|
|||
in the file system as one or more image file(s). This field should NOT be
|
||||
used if the image is stored in another NWB file and that file is linked
|
||||
to this file.
|
||||
multivalued: true
|
||||
range: text
|
||||
multivalued: false
|
||||
range: ImageSeries__external_file
|
||||
required: false
|
||||
format:
|
||||
name: format
|
||||
|
|
@ -143,40 +108,41 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
ImageSeries__data:
|
||||
name: ImageSeries__data
|
||||
description: Binary data representing images across frames.
|
||||
ImageSeries__external_file:
|
||||
name: ImageSeries__external_file
|
||||
description: Paths to one or more external file(s). The field is only present
|
||||
if format='external'. This is only relevant if the image series is stored in
|
||||
the file system as one or more image file(s). This field should NOT be used
|
||||
if the image is stored in another NWB file and that file is linked to this file.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
ifabsent: string(external_file)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
equals_string: external_file
|
||||
starting_frame:
|
||||
name: starting_frame
|
||||
description: Each external image may contain one or more consecutive frames
|
||||
of the full ImageSeries. This attribute serves as an index to indicate which
|
||||
frames each file contains, to faciliate random access. The 'starting_frame'
|
||||
attribute, hence, contains a list of frame numbers within the full ImageSeries
|
||||
of the first frame of each file listed in the parent 'external_file' dataset.
|
||||
Zero-based indexing is used (hence, the first element will always be zero).
|
||||
For example, if the 'external_file' dataset has three paths to files and
|
||||
the first file has 5 frames, the second file has 10 frames, and the third
|
||||
file has 20 frames, then this attribute will have values [0, 5, 15]. If
|
||||
there is a single external file that holds all of the frames of the ImageSeries
|
||||
(and so there is a single element in the 'external_file' dataset), then
|
||||
this attribute should have value [0].
|
||||
range: int32
|
||||
array:
|
||||
name: array
|
||||
range: ImageSeries__data__Array
|
||||
ImageSeries__data__Array:
|
||||
name: ImageSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
z:
|
||||
name: z
|
||||
range: numeric
|
||||
required: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_files
|
||||
range: text
|
||||
ImageMaskSeries:
|
||||
name: ImageMaskSeries
|
||||
description: An alpha mask that is applied to a presented visual stimulus. The
|
||||
|
|
@ -216,14 +182,36 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: OpticalSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height, depth
|
||||
exact_cardinality: 3
|
||||
data:
|
||||
name: data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
multivalued: false
|
||||
range: OpticalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
orientation:
|
||||
name: orientation
|
||||
description: Description of image relative to some reference frame (e.g.,
|
||||
|
|
@ -232,72 +220,6 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
OpticalSeries__field_of_view:
|
||||
name: OpticalSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__field_of_view__Array
|
||||
OpticalSeries__field_of_view__Array:
|
||||
name: OpticalSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width, height:
|
||||
name: width, height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width, height, depth:
|
||||
name: width, height, depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
OpticalSeries__data:
|
||||
name: OpticalSeries__data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__data__Array
|
||||
OpticalSeries__data__Array:
|
||||
name: OpticalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
IndexSeries:
|
||||
name: IndexSeries
|
||||
description: Stores indices to image frames stored in an ImageSeries. The purpose
|
||||
|
|
@ -316,7 +238,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Index of the frame in the referenced ImageSeries.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int32
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.language
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: 'False'
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
description: Adapter objects to mimic the behavior of elements in the nwb-schema-language
|
||||
id: nwb.language
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.misc
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.misc
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -35,13 +42,19 @@ classes:
|
|||
feature_units:
|
||||
name: feature_units
|
||||
description: Units of each feature.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: false
|
||||
features:
|
||||
name: features
|
||||
description: Description of the features represented in TimeSeries::data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -64,19 +77,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AbstractFeatureSeries__data__Array
|
||||
AbstractFeatureSeries__data__Array:
|
||||
name: AbstractFeatureSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
AnnotationSeries:
|
||||
name: AnnotationSeries
|
||||
description: Stores user annotations made during an experiment. The data[] field
|
||||
|
|
@ -93,7 +102,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Annotations made during an experiment.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -116,7 +128,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Use values >0 if interval started, <0 if interval ended.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int8
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -169,23 +184,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: DecompositionSeries__data__Array
|
||||
DecompositionSeries__data__Array:
|
||||
name: DecompositionSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: true
|
||||
num_bands:
|
||||
name: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
DecompositionSeries__bands:
|
||||
name: DecompositionSeries__bands
|
||||
description: Table for describing the bands that this series was generated from.
|
||||
|
|
@ -209,33 +213,31 @@ classes:
|
|||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
multivalued: false
|
||||
range: DecompositionSeries__bands__band_limits
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
- alias: low, high
|
||||
exact_cardinality: 2
|
||||
range: float32
|
||||
required: true
|
||||
band_mean:
|
||||
name: band_mean
|
||||
description: The mean Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
band_stdev:
|
||||
name: band_stdev
|
||||
description: The standard deviation of Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
DecompositionSeries__bands__band_limits:
|
||||
name: DecompositionSeries__bands__band_limits
|
||||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(band_limits)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: band_limits
|
||||
Units:
|
||||
name: Units
|
||||
description: Data about spiking units. Event times of observed units (e.g. cell,
|
||||
|
|
@ -269,7 +271,12 @@ classes:
|
|||
name: obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
multivalued: false
|
||||
range: Units__obs_intervals
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_intervals
|
||||
- alias: start|end
|
||||
exact_cardinality: 2
|
||||
range: float64
|
||||
required: false
|
||||
electrodes_index:
|
||||
name: electrodes_index
|
||||
|
|
@ -292,14 +299,34 @@ classes:
|
|||
name: waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_mean
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_sd
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
tree_root: true
|
||||
Units__spike_times_index:
|
||||
name: Units__spike_times_index
|
||||
|
|
@ -345,18 +372,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals_index
|
||||
Units__obs_intervals:
|
||||
name: Units__obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(obs_intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals
|
||||
Units__electrodes_index:
|
||||
name: Units__electrodes_index
|
||||
description: Index into electrodes.
|
||||
|
|
@ -381,43 +396,3 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: electrodes
|
||||
Units__waveform_mean:
|
||||
name: Units__waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveform_sd:
|
||||
name: Units__waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ogen
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ogen
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -20,7 +27,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Applied power for optogenetic stimulus, in watts.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ophys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ophys
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -33,39 +40,18 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: TwoPhotonSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 3
|
||||
tree_root: true
|
||||
TwoPhotonSeries__field_of_view:
|
||||
name: TwoPhotonSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: TwoPhotonSeries__field_of_view__Array
|
||||
TwoPhotonSeries__field_of_view__Array:
|
||||
name: TwoPhotonSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width|height:
|
||||
name: width|height
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width|height|depth:
|
||||
name: width|height|depth
|
||||
range: float32
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RoiResponseSeries:
|
||||
name: RoiResponseSeries
|
||||
description: ROI responses over an imaging plane. The first dimension represents
|
||||
|
|
@ -81,8 +67,16 @@ classes:
|
|||
name: data
|
||||
description: Signals from ROIs.
|
||||
multivalued: false
|
||||
range: RoiResponseSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_ROIs
|
||||
rois:
|
||||
name: rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -91,32 +85,6 @@ classes:
|
|||
range: RoiResponseSeries__rois
|
||||
required: true
|
||||
tree_root: true
|
||||
RoiResponseSeries__data:
|
||||
name: RoiResponseSeries__data
|
||||
description: Signals from ROIs.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: RoiResponseSeries__data__Array
|
||||
RoiResponseSeries__data__Array:
|
||||
name: RoiResponseSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_ROIs:
|
||||
name: num_ROIs
|
||||
range: numeric
|
||||
required: false
|
||||
RoiResponseSeries__rois:
|
||||
name: RoiResponseSeries__rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -137,12 +105,13 @@ classes:
|
|||
for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
Fluorescence:
|
||||
name: Fluorescence
|
||||
|
|
@ -151,12 +120,13 @@ classes:
|
|||
for ROIs and for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
ImageSegmentation:
|
||||
name: ImageSegmentation
|
||||
|
|
@ -169,12 +139,13 @@ classes:
|
|||
is required and ROI names should remain consistent between them.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
tree_root: true
|
||||
PlaneSegmentation:
|
||||
name: PlaneSegmentation
|
||||
|
|
@ -191,8 +162,20 @@ classes:
|
|||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
multivalued: false
|
||||
range: PlaneSegmentation__image_mask
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- alias: num_z
|
||||
pixel_mask_index:
|
||||
name: pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -228,19 +211,6 @@ classes:
|
|||
any_of:
|
||||
- range: ImageSeries
|
||||
tree_root: true
|
||||
PlaneSegmentation__image_mask:
|
||||
name: PlaneSegmentation__image_mask
|
||||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(image_mask)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: image_mask
|
||||
PlaneSegmentation__pixel_mask_index:
|
||||
name: PlaneSegmentation__pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -270,12 +240,13 @@ classes:
|
|||
description: An imaging plane and its metadata.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
tree_root: true
|
||||
OpticalChannel:
|
||||
name: OpticalChannel
|
||||
|
|
@ -307,12 +278,13 @@ classes:
|
|||
frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
tree_root: true
|
||||
CorrectedImageStack:
|
||||
name: CorrectedImageStack
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.retinotopy
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.retinotopy
|
||||
version: 2.2.4
|
||||
imports:
|
||||
|
|
@ -55,7 +62,11 @@ classes:
|
|||
description: Two-element array describing the contents of the two response
|
||||
axis fields. Description should be something like ['altitude', 'azimuth']
|
||||
or '['radius', 'theta'].
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: axis_1, axis_2
|
||||
exact_cardinality: 2
|
||||
range: text
|
||||
required: true
|
||||
focal_depth_image:
|
||||
|
|
@ -106,19 +117,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
ImagingRetinotopy__axis_1_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_1_power_map:
|
||||
name: ImagingRetinotopy__axis_1_power_map
|
||||
description: Power response on the first measured axis. Response is scaled so
|
||||
|
|
@ -146,19 +149,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_power_map__Array
|
||||
ImagingRetinotopy__axis_1_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_phase_map:
|
||||
name: ImagingRetinotopy__axis_2_phase_map
|
||||
description: Phase response to stimulus on the second measured axis.
|
||||
|
|
@ -185,19 +180,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
ImagingRetinotopy__axis_2_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_power_map:
|
||||
name: ImagingRetinotopy__axis_2_power_map
|
||||
description: Power response on the second measured axis. Response is scaled so
|
||||
|
|
@ -225,19 +212,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_power_map__Array
|
||||
ImagingRetinotopy__axis_2_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__focal_depth_image:
|
||||
name: ImagingRetinotopy__focal_depth_image
|
||||
description: 'Gray-scale image taken with same settings/parameters (e.g., focal
|
||||
|
|
@ -274,19 +253,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__focal_depth_image__Array
|
||||
ImagingRetinotopy__focal_depth_image__Array:
|
||||
name: ImagingRetinotopy__focal_depth_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
ImagingRetinotopy__sign_map:
|
||||
name: ImagingRetinotopy__sign_map
|
||||
description: Sine of the angle between the direction of the gradient in axis_1
|
||||
|
|
@ -310,19 +281,11 @@ classes:
|
|||
range: float32
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__sign_map__Array
|
||||
ImagingRetinotopy__sign_map__Array:
|
||||
name: ImagingRetinotopy__sign_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__vasculature_image:
|
||||
name: ImagingRetinotopy__vasculature_image
|
||||
description: 'Gray-scale anatomical image of cortical surface. Array structure:
|
||||
|
|
@ -355,16 +318,8 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__vasculature_image__Array
|
||||
ImagingRetinotopy__vasculature_image__Array:
|
||||
name: ImagingRetinotopy__vasculature_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
name: core
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: true
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: 'True'
|
||||
value: core
|
||||
description: NWB namespace
|
||||
id: core
|
||||
version: 2.2.4
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -39,32 +46,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
NWBContainer:
|
||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
|
||||
|
|
@ -130,7 +130,10 @@ classes:
|
|||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: false
|
||||
control:
|
||||
|
|
@ -138,7 +141,10 @@ classes:
|
|||
description: Numerical labels that apply to each time point in data for the
|
||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: uint8
|
||||
required: false
|
||||
control_description:
|
||||
|
|
@ -146,7 +152,10 @@ classes:
|
|||
description: Description of each control value. Must be present if control
|
||||
is present. If present, control_description[0] should describe time points
|
||||
where control == 0.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
|
||||
sync:
|
||||
|
|
@ -201,27 +210,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
|
||||
|
|
@ -268,13 +276,14 @@ classes:
|
|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -59,19 +66,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
|
||||
|
|
@ -88,12 +91,13 @@ classes:
|
|||
events. BehavioralTimeSeries is for continuous data.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
tree_root: true
|
||||
BehavioralEvents:
|
||||
name: BehavioralEvents
|
||||
|
|
@ -101,12 +105,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
|
||||
name: BehavioralTimeSeries
|
||||
|
|
@ -114,36 +119,39 @@ classes:
|
|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -154,22 +162,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.device
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.device
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ecephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ecephys
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -25,8 +32,21 @@ classes:
|
|||
name: data
|
||||
description: Recorded voltage data.
|
||||
multivalued: false
|
||||
range: ElectricalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
electrodes:
|
||||
name: electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -45,47 +65,13 @@ classes:
|
|||
as native values generated by data acquisition systems. If this dataset
|
||||
is not present, then there is no channel-specific conversion factor, i.e.
|
||||
it is 1 for all channels.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_channels
|
||||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
ElectricalSeries__data:
|
||||
name: ElectricalSeries__data
|
||||
description: Recorded voltage data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. This value
|
||||
is fixed to 'volts'. Actual stored values are not necessarily stored in
|
||||
these units. To access the data in these units, multiply 'data' by 'conversion'
|
||||
and 'channel_conversion' (if present).
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ElectricalSeries__data__Array
|
||||
ElectricalSeries__data__Array:
|
||||
name: ElectricalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
ElectricalSeries__electrodes:
|
||||
name: ElectricalSeries__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -120,52 +106,31 @@ classes:
|
|||
name: data
|
||||
description: Spike waveforms.
|
||||
multivalued: false
|
||||
range: SpikeEventSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
timestamps:
|
||||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
Timestamps are required for the events. Unlike for TimeSeries, timestamps
|
||||
are required for SpikeEventSeries and are thus re-specified here.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
SpikeEventSeries__data:
|
||||
name: SpikeEventSeries__data
|
||||
description: Spike waveforms.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement for waveforms, which is fixed to 'volts'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpikeEventSeries__data__Array
|
||||
SpikeEventSeries__data__Array:
|
||||
name: SpikeEventSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: numeric
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
FeatureExtraction:
|
||||
name: FeatureExtraction
|
||||
description: Features, such as PC1 and PC2, that are extracted from signals stored
|
||||
|
|
@ -181,19 +146,30 @@ classes:
|
|||
name: description
|
||||
description: Description of features (eg, ''PC1'') for each of the extracted
|
||||
features.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
features:
|
||||
name: features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
multivalued: false
|
||||
range: FeatureExtraction__features
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_features
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of events that features correspond to (can be a link).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
electrodes:
|
||||
|
|
@ -204,36 +180,6 @@ classes:
|
|||
range: FeatureExtraction__electrodes
|
||||
required: true
|
||||
tree_root: true
|
||||
FeatureExtraction__features:
|
||||
name: FeatureExtraction__features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(features)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: features
|
||||
array:
|
||||
name: array
|
||||
range: FeatureExtraction__features__Array
|
||||
FeatureExtraction__features__Array:
|
||||
name: FeatureExtraction__features__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: float32
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: float32
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: float32
|
||||
required: true
|
||||
FeatureExtraction__electrodes:
|
||||
name: FeatureExtraction__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -270,13 +216,19 @@ classes:
|
|||
corresponding to time of event. ''description'' should define what is meant
|
||||
by time of event (e.g., .25 ms before action potential peak, zero-crossing
|
||||
time, etc). The index points to each event from the raw data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Timestamps of events, in seconds.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -287,12 +239,13 @@ classes:
|
|||
during experiment acquisition.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
tree_root: true
|
||||
FilteredEphys:
|
||||
name: FilteredEphys
|
||||
|
|
@ -309,12 +262,13 @@ classes:
|
|||
the ElectricalSeries.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
LFP:
|
||||
name: LFP
|
||||
|
|
@ -323,12 +277,13 @@ classes:
|
|||
properties should be noted in the ElectricalSeries description or comments field.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
ElectrodeGroup:
|
||||
name: ElectrodeGroup
|
||||
|
|
@ -385,72 +340,24 @@ classes:
|
|||
3 is in array slot [3]). Waveforms corresponding to gaps in cluster sequence
|
||||
should be empty (e.g., zero- filled)
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_mean
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as
|
||||
in mean
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_sd
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
tree_root: true
|
||||
ClusterWaveforms__waveform_mean:
|
||||
name: ClusterWaveforms__waveform_mean
|
||||
description: The mean waveform for each cluster, using the same indices for each
|
||||
wave as cluster numbers in the associated Clustering module (i.e, cluster 3
|
||||
is in array slot [3]). Waveforms corresponding to gaps in cluster sequence should
|
||||
be empty (e.g., zero- filled)
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_mean__Array
|
||||
ClusterWaveforms__waveform_mean__Array:
|
||||
name: ClusterWaveforms__waveform_mean__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
ClusterWaveforms__waveform_sd:
|
||||
name: ClusterWaveforms__waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as in
|
||||
mean
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_sd__Array
|
||||
ClusterWaveforms__waveform_sd__Array:
|
||||
name: ClusterWaveforms__waveform_sd__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
Clustering:
|
||||
name: Clustering
|
||||
description: DEPRECATED Clustered spike data, whether from automatic clustering
|
||||
|
|
@ -472,21 +379,30 @@ classes:
|
|||
num:
|
||||
name: num
|
||||
description: Cluster number of each event
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
peak_over_rms:
|
||||
name: peak_over_rms
|
||||
description: Maximum ratio of waveform peak to RMS on any channel in the cluster
|
||||
(provides a basic clustering metric).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of clustered events, in seconds. This may be a link to
|
||||
times field in associated FeatureExtraction module.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.epoch
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.epoch
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.file
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.file
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -56,7 +63,10 @@ classes:
|
|||
The file can be created after the experiment was run, so this may differ
|
||||
from the experiment start time. Each modification to the nwb file adds a
|
||||
new entry to the array.'
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_modifications
|
||||
range: isodatetime
|
||||
required: true
|
||||
identifier:
|
||||
|
|
@ -198,9 +208,14 @@ classes:
|
|||
having a particular scientific goal, trials (see trials subgroup) during
|
||||
an experiment, or epochs (see epochs subgroup) deriving from analysis of
|
||||
data.
|
||||
multivalued: false
|
||||
range: NWBFile__intervals
|
||||
required: false
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
units:
|
||||
name: units
|
||||
description: Data about sorted spike units.
|
||||
|
|
@ -289,7 +304,10 @@ classes:
|
|||
name: experimenter
|
||||
description: Name of person(s) who performed the experiment. Can also specify
|
||||
roles of different people involved.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_experimenters
|
||||
range: text
|
||||
required: false
|
||||
institution:
|
||||
|
|
@ -301,7 +319,10 @@ classes:
|
|||
keywords:
|
||||
name: keywords
|
||||
description: Terms to search over.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_keywords
|
||||
range: text
|
||||
required: false
|
||||
lab:
|
||||
|
|
@ -333,7 +354,10 @@ classes:
|
|||
related_publications:
|
||||
name: related_publications
|
||||
description: Publication information. PMID, DOI, URL, etc.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_publications
|
||||
range: text
|
||||
required: false
|
||||
session_id:
|
||||
|
|
@ -575,45 +599,6 @@ classes:
|
|||
multivalued: false
|
||||
range: SweepTable
|
||||
required: false
|
||||
NWBFile__intervals:
|
||||
name: NWBFile__intervals
|
||||
description: Experimental intervals, whether that be logically distinct sub-experiments
|
||||
having a particular scientific goal, trials (see trials subgroup) during an
|
||||
experiment, or epochs (see epochs subgroup) deriving from analysis of data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: intervals
|
||||
epochs:
|
||||
name: epochs
|
||||
description: Divisions in time marking experimental stages or sub-divisions
|
||||
of a single recording session.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
trials:
|
||||
name: trials
|
||||
description: Repeated experimental events that have a logical grouping.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
invalid_times:
|
||||
name: invalid_times
|
||||
description: Time intervals that should be removed from analysis.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
time_intervals:
|
||||
name: time_intervals
|
||||
description: Optional additional table(s) for describing other experimental
|
||||
time intervals.
|
||||
multivalued: true
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
LabMetaData:
|
||||
name: LabMetaData
|
||||
description: Lab-specific meta-data.
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.icephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.icephys
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -30,8 +37,8 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Recorded voltage or current.
|
||||
multivalued: true
|
||||
range: numeric
|
||||
multivalued: false
|
||||
range: PatchClampSeries__data
|
||||
required: true
|
||||
gain:
|
||||
name: gain
|
||||
|
|
@ -41,6 +48,29 @@ classes:
|
|||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
PatchClampSeries__data:
|
||||
name: PatchClampSeries__data
|
||||
description: Recorded voltage or current.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. Actual stored
|
||||
values are not necessarily stored in these units. To access the data in
|
||||
these units, multiply 'data' by 'conversion'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
CurrentClampSeries:
|
||||
name: CurrentClampSeries
|
||||
description: Voltage data from an intracellular current-clamp recording. A corresponding
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.image
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.image
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -16,22 +23,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: GrayscaleImage__Array
|
||||
tree_root: true
|
||||
GrayscaleImage__Array:
|
||||
name: GrayscaleImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
RGBImage:
|
||||
name: RGBImage
|
||||
description: A color image.
|
||||
|
|
@ -42,28 +34,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBImage__Array
|
||||
tree_root: true
|
||||
RGBImage__Array:
|
||||
name: RGBImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RGBAImage:
|
||||
name: RGBAImage
|
||||
description: A color image with transparency.
|
||||
|
|
@ -74,28 +45,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBAImage__Array
|
||||
tree_root: true
|
||||
RGBAImage__Array:
|
||||
name: RGBAImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageSeries:
|
||||
name: ImageSeries
|
||||
description: General image data that is common between acquisition and stimulus
|
||||
|
|
@ -115,12 +65,27 @@ classes:
|
|||
name: data
|
||||
description: Binary data representing images across frames.
|
||||
multivalued: false
|
||||
range: ImageSeries__data
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: z
|
||||
dimension:
|
||||
name: dimension
|
||||
description: Number of pixels on x, y, (and z) axes.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: rank
|
||||
range: int32
|
||||
required: false
|
||||
external_file:
|
||||
|
|
@ -130,8 +95,8 @@ classes:
|
|||
in the file system as one or more image file(s). This field should NOT be
|
||||
used if the image is stored in another NWB file and that file is linked
|
||||
to this file.
|
||||
multivalued: true
|
||||
range: text
|
||||
multivalued: false
|
||||
range: ImageSeries__external_file
|
||||
required: false
|
||||
format:
|
||||
name: format
|
||||
|
|
@ -143,40 +108,41 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
ImageSeries__data:
|
||||
name: ImageSeries__data
|
||||
description: Binary data representing images across frames.
|
||||
ImageSeries__external_file:
|
||||
name: ImageSeries__external_file
|
||||
description: Paths to one or more external file(s). The field is only present
|
||||
if format='external'. This is only relevant if the image series is stored in
|
||||
the file system as one or more image file(s). This field should NOT be used
|
||||
if the image is stored in another NWB file and that file is linked to this file.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
ifabsent: string(external_file)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
equals_string: external_file
|
||||
starting_frame:
|
||||
name: starting_frame
|
||||
description: Each external image may contain one or more consecutive frames
|
||||
of the full ImageSeries. This attribute serves as an index to indicate which
|
||||
frames each file contains, to faciliate random access. The 'starting_frame'
|
||||
attribute, hence, contains a list of frame numbers within the full ImageSeries
|
||||
of the first frame of each file listed in the parent 'external_file' dataset.
|
||||
Zero-based indexing is used (hence, the first element will always be zero).
|
||||
For example, if the 'external_file' dataset has three paths to files and
|
||||
the first file has 5 frames, the second file has 10 frames, and the third
|
||||
file has 20 frames, then this attribute will have values [0, 5, 15]. If
|
||||
there is a single external file that holds all of the frames of the ImageSeries
|
||||
(and so there is a single element in the 'external_file' dataset), then
|
||||
this attribute should have value [0].
|
||||
range: int32
|
||||
array:
|
||||
name: array
|
||||
range: ImageSeries__data__Array
|
||||
ImageSeries__data__Array:
|
||||
name: ImageSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
z:
|
||||
name: z
|
||||
range: numeric
|
||||
required: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_files
|
||||
range: text
|
||||
ImageMaskSeries:
|
||||
name: ImageMaskSeries
|
||||
description: An alpha mask that is applied to a presented visual stimulus. The
|
||||
|
|
@ -216,14 +182,36 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: OpticalSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height, depth
|
||||
exact_cardinality: 3
|
||||
data:
|
||||
name: data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
multivalued: false
|
||||
range: OpticalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
orientation:
|
||||
name: orientation
|
||||
description: Description of image relative to some reference frame (e.g.,
|
||||
|
|
@ -232,72 +220,6 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
OpticalSeries__field_of_view:
|
||||
name: OpticalSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__field_of_view__Array
|
||||
OpticalSeries__field_of_view__Array:
|
||||
name: OpticalSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width, height:
|
||||
name: width, height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width, height, depth:
|
||||
name: width, height, depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
OpticalSeries__data:
|
||||
name: OpticalSeries__data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__data__Array
|
||||
OpticalSeries__data__Array:
|
||||
name: OpticalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
IndexSeries:
|
||||
name: IndexSeries
|
||||
description: Stores indices to image frames stored in an ImageSeries. The purpose
|
||||
|
|
@ -316,7 +238,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Index of the frame in the referenced ImageSeries.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int32
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.language
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: 'False'
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
description: Adapter objects to mimic the behavior of elements in the nwb-schema-language
|
||||
id: nwb.language
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.misc
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.misc
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -35,13 +42,19 @@ classes:
|
|||
feature_units:
|
||||
name: feature_units
|
||||
description: Units of each feature.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: false
|
||||
features:
|
||||
name: features
|
||||
description: Description of the features represented in TimeSeries::data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -64,19 +77,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AbstractFeatureSeries__data__Array
|
||||
AbstractFeatureSeries__data__Array:
|
||||
name: AbstractFeatureSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
AnnotationSeries:
|
||||
name: AnnotationSeries
|
||||
description: Stores user annotations made during an experiment. The data[] field
|
||||
|
|
@ -93,7 +102,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Annotations made during an experiment.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -116,7 +128,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Use values >0 if interval started, <0 if interval ended.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int8
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -169,23 +184,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: DecompositionSeries__data__Array
|
||||
DecompositionSeries__data__Array:
|
||||
name: DecompositionSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: true
|
||||
num_bands:
|
||||
name: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
DecompositionSeries__bands:
|
||||
name: DecompositionSeries__bands
|
||||
description: Table for describing the bands that this series was generated from.
|
||||
|
|
@ -209,33 +213,31 @@ classes:
|
|||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
multivalued: false
|
||||
range: DecompositionSeries__bands__band_limits
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
- alias: low, high
|
||||
exact_cardinality: 2
|
||||
range: float32
|
||||
required: true
|
||||
band_mean:
|
||||
name: band_mean
|
||||
description: The mean Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
band_stdev:
|
||||
name: band_stdev
|
||||
description: The standard deviation of Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
DecompositionSeries__bands__band_limits:
|
||||
name: DecompositionSeries__bands__band_limits
|
||||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(band_limits)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: band_limits
|
||||
Units:
|
||||
name: Units
|
||||
description: Data about spiking units. Event times of observed units (e.g. cell,
|
||||
|
|
@ -269,7 +271,12 @@ classes:
|
|||
name: obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
multivalued: false
|
||||
range: Units__obs_intervals
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_intervals
|
||||
- alias: start|end
|
||||
exact_cardinality: 2
|
||||
range: float64
|
||||
required: false
|
||||
electrodes_index:
|
||||
name: electrodes_index
|
||||
|
|
@ -292,14 +299,34 @@ classes:
|
|||
name: waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_mean
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_sd
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
tree_root: true
|
||||
Units__spike_times_index:
|
||||
name: Units__spike_times_index
|
||||
|
|
@ -345,18 +372,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals_index
|
||||
Units__obs_intervals:
|
||||
name: Units__obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(obs_intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals
|
||||
Units__electrodes_index:
|
||||
name: Units__electrodes_index
|
||||
description: Index into electrodes.
|
||||
|
|
@ -381,43 +396,3 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: electrodes
|
||||
Units__waveform_mean:
|
||||
name: Units__waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveform_sd:
|
||||
name: Units__waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ogen
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ogen
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -20,7 +27,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Applied power for optogenetic stimulus, in watts.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ophys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ophys
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -33,39 +40,18 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: TwoPhotonSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height|depth
|
||||
exact_cardinality: 3
|
||||
tree_root: true
|
||||
TwoPhotonSeries__field_of_view:
|
||||
name: TwoPhotonSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: TwoPhotonSeries__field_of_view__Array
|
||||
TwoPhotonSeries__field_of_view__Array:
|
||||
name: TwoPhotonSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width|height:
|
||||
name: width|height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width|height|depth:
|
||||
name: width|height|depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RoiResponseSeries:
|
||||
name: RoiResponseSeries
|
||||
description: ROI responses over an imaging plane. The first dimension represents
|
||||
|
|
@ -81,8 +67,16 @@ classes:
|
|||
name: data
|
||||
description: Signals from ROIs.
|
||||
multivalued: false
|
||||
range: RoiResponseSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_ROIs
|
||||
rois:
|
||||
name: rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -91,32 +85,6 @@ classes:
|
|||
range: RoiResponseSeries__rois
|
||||
required: true
|
||||
tree_root: true
|
||||
RoiResponseSeries__data:
|
||||
name: RoiResponseSeries__data
|
||||
description: Signals from ROIs.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: RoiResponseSeries__data__Array
|
||||
RoiResponseSeries__data__Array:
|
||||
name: RoiResponseSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_ROIs:
|
||||
name: num_ROIs
|
||||
range: numeric
|
||||
required: false
|
||||
RoiResponseSeries__rois:
|
||||
name: RoiResponseSeries__rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -137,12 +105,13 @@ classes:
|
|||
for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
Fluorescence:
|
||||
name: Fluorescence
|
||||
|
|
@ -151,12 +120,13 @@ classes:
|
|||
for ROIs and for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
ImageSegmentation:
|
||||
name: ImageSegmentation
|
||||
|
|
@ -169,12 +139,13 @@ classes:
|
|||
is required and ROI names should remain consistent between them.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
tree_root: true
|
||||
PlaneSegmentation:
|
||||
name: PlaneSegmentation
|
||||
|
|
@ -191,8 +162,20 @@ classes:
|
|||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
multivalued: false
|
||||
range: PlaneSegmentation__image_mask
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- alias: num_z
|
||||
pixel_mask_index:
|
||||
name: pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -228,19 +211,6 @@ classes:
|
|||
any_of:
|
||||
- range: ImageSeries
|
||||
tree_root: true
|
||||
PlaneSegmentation__image_mask:
|
||||
name: PlaneSegmentation__image_mask
|
||||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(image_mask)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: image_mask
|
||||
PlaneSegmentation__pixel_mask_index:
|
||||
name: PlaneSegmentation__pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -270,12 +240,13 @@ classes:
|
|||
description: An imaging plane and its metadata.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
tree_root: true
|
||||
OpticalChannel:
|
||||
name: OpticalChannel
|
||||
|
|
@ -307,12 +278,13 @@ classes:
|
|||
frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
tree_root: true
|
||||
CorrectedImageStack:
|
||||
name: CorrectedImageStack
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.retinotopy
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.retinotopy
|
||||
version: 2.2.5
|
||||
imports:
|
||||
|
|
@ -55,7 +62,11 @@ classes:
|
|||
description: Two-element array describing the contents of the two response
|
||||
axis fields. Description should be something like ['altitude', 'azimuth']
|
||||
or '['radius', 'theta'].
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: axis_1, axis_2
|
||||
exact_cardinality: 2
|
||||
range: text
|
||||
required: true
|
||||
focal_depth_image:
|
||||
|
|
@ -106,19 +117,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
ImagingRetinotopy__axis_1_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_1_power_map:
|
||||
name: ImagingRetinotopy__axis_1_power_map
|
||||
description: Power response on the first measured axis. Response is scaled so
|
||||
|
|
@ -146,19 +149,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_power_map__Array
|
||||
ImagingRetinotopy__axis_1_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_phase_map:
|
||||
name: ImagingRetinotopy__axis_2_phase_map
|
||||
description: Phase response to stimulus on the second measured axis.
|
||||
|
|
@ -185,19 +180,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
ImagingRetinotopy__axis_2_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_power_map:
|
||||
name: ImagingRetinotopy__axis_2_power_map
|
||||
description: Power response on the second measured axis. Response is scaled so
|
||||
|
|
@ -225,19 +212,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_power_map__Array
|
||||
ImagingRetinotopy__axis_2_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__focal_depth_image:
|
||||
name: ImagingRetinotopy__focal_depth_image
|
||||
description: 'Gray-scale image taken with same settings/parameters (e.g., focal
|
||||
|
|
@ -274,19 +253,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__focal_depth_image__Array
|
||||
ImagingRetinotopy__focal_depth_image__Array:
|
||||
name: ImagingRetinotopy__focal_depth_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
ImagingRetinotopy__sign_map:
|
||||
name: ImagingRetinotopy__sign_map
|
||||
description: Sine of the angle between the direction of the gradient in axis_1
|
||||
|
|
@ -310,19 +281,11 @@ classes:
|
|||
range: float32
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__sign_map__Array
|
||||
ImagingRetinotopy__sign_map__Array:
|
||||
name: ImagingRetinotopy__sign_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__vasculature_image:
|
||||
name: ImagingRetinotopy__vasculature_image
|
||||
description: 'Gray-scale anatomical image of cortical surface. Array structure:
|
||||
|
|
@ -355,16 +318,8 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__vasculature_image__Array
|
||||
ImagingRetinotopy__vasculature_image__Array:
|
||||
name: ImagingRetinotopy__vasculature_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
name: core
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: true
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: 'True'
|
||||
value: core
|
||||
description: NWB namespace
|
||||
id: core
|
||||
version: 2.2.5
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -40,32 +47,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
NWBContainer:
|
||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
|
||||
|
|
@ -131,7 +131,10 @@ classes:
|
|||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: false
|
||||
control:
|
||||
|
|
@ -139,7 +142,10 @@ classes:
|
|||
description: Numerical labels that apply to each time point in data for the
|
||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: uint8
|
||||
required: false
|
||||
control_description:
|
||||
|
|
@ -147,7 +153,10 @@ classes:
|
|||
description: Description of each control value. Must be present if control
|
||||
is present. If present, control_description[0] should describe time points
|
||||
where control == 0.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
|
||||
sync:
|
||||
|
|
@ -214,27 +223,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
|
||||
|
|
@ -281,13 +289,14 @@ classes:
|
|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -59,19 +66,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
|
||||
|
|
@ -88,12 +91,13 @@ classes:
|
|||
events. BehavioralTimeSeries is for continuous data.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
tree_root: true
|
||||
BehavioralEvents:
|
||||
name: BehavioralEvents
|
||||
|
|
@ -101,12 +105,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
|
||||
name: BehavioralTimeSeries
|
||||
|
|
@ -114,36 +119,39 @@ classes:
|
|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -154,22 +162,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.device
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.device
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ecephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ecephys
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -35,8 +42,21 @@ classes:
|
|||
name: data
|
||||
description: Recorded voltage data.
|
||||
multivalued: false
|
||||
range: ElectricalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
electrodes:
|
||||
name: electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -55,47 +75,13 @@ classes:
|
|||
as native values generated by data acquisition systems. If this dataset
|
||||
is not present, then there is no channel-specific conversion factor, i.e.
|
||||
it is 1 for all channels.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_channels
|
||||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
ElectricalSeries__data:
|
||||
name: ElectricalSeries__data
|
||||
description: Recorded voltage data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. This value
|
||||
is fixed to 'volts'. Actual stored values are not necessarily stored in
|
||||
these units. To access the data in these units, multiply 'data' by 'conversion'
|
||||
and 'channel_conversion' (if present).
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ElectricalSeries__data__Array
|
||||
ElectricalSeries__data__Array:
|
||||
name: ElectricalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
ElectricalSeries__electrodes:
|
||||
name: ElectricalSeries__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -130,52 +116,31 @@ classes:
|
|||
name: data
|
||||
description: Spike waveforms.
|
||||
multivalued: false
|
||||
range: SpikeEventSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
timestamps:
|
||||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
Timestamps are required for the events. Unlike for TimeSeries, timestamps
|
||||
are required for SpikeEventSeries and are thus re-specified here.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
SpikeEventSeries__data:
|
||||
name: SpikeEventSeries__data
|
||||
description: Spike waveforms.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement for waveforms, which is fixed to 'volts'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpikeEventSeries__data__Array
|
||||
SpikeEventSeries__data__Array:
|
||||
name: SpikeEventSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: numeric
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
FeatureExtraction:
|
||||
name: FeatureExtraction
|
||||
description: Features, such as PC1 and PC2, that are extracted from signals stored
|
||||
|
|
@ -191,19 +156,30 @@ classes:
|
|||
name: description
|
||||
description: Description of features (eg, ''PC1'') for each of the extracted
|
||||
features.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
features:
|
||||
name: features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
multivalued: false
|
||||
range: FeatureExtraction__features
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_features
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of events that features correspond to (can be a link).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
electrodes:
|
||||
|
|
@ -214,36 +190,6 @@ classes:
|
|||
range: FeatureExtraction__electrodes
|
||||
required: true
|
||||
tree_root: true
|
||||
FeatureExtraction__features:
|
||||
name: FeatureExtraction__features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(features)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: features
|
||||
array:
|
||||
name: array
|
||||
range: FeatureExtraction__features__Array
|
||||
FeatureExtraction__features__Array:
|
||||
name: FeatureExtraction__features__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: float32
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: float32
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: float32
|
||||
required: true
|
||||
FeatureExtraction__electrodes:
|
||||
name: FeatureExtraction__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -280,13 +226,19 @@ classes:
|
|||
corresponding to time of event. ''description'' should define what is meant
|
||||
by time of event (e.g., .25 ms before action potential peak, zero-crossing
|
||||
time, etc). The index points to each event from the raw data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Timestamps of events, in seconds.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -297,12 +249,13 @@ classes:
|
|||
during experiment acquisition.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
tree_root: true
|
||||
FilteredEphys:
|
||||
name: FilteredEphys
|
||||
|
|
@ -319,12 +272,13 @@ classes:
|
|||
the ElectricalSeries 'filtering' attribute.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
LFP:
|
||||
name: LFP
|
||||
|
|
@ -333,12 +287,13 @@ classes:
|
|||
properties should be noted in the ElectricalSeries 'filtering' attribute.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
ElectrodeGroup:
|
||||
name: ElectrodeGroup
|
||||
|
|
@ -395,72 +350,24 @@ classes:
|
|||
3 is in array slot [3]). Waveforms corresponding to gaps in cluster sequence
|
||||
should be empty (e.g., zero- filled)
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_mean
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as
|
||||
in mean
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_sd
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
tree_root: true
|
||||
ClusterWaveforms__waveform_mean:
|
||||
name: ClusterWaveforms__waveform_mean
|
||||
description: The mean waveform for each cluster, using the same indices for each
|
||||
wave as cluster numbers in the associated Clustering module (i.e, cluster 3
|
||||
is in array slot [3]). Waveforms corresponding to gaps in cluster sequence should
|
||||
be empty (e.g., zero- filled)
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_mean__Array
|
||||
ClusterWaveforms__waveform_mean__Array:
|
||||
name: ClusterWaveforms__waveform_mean__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
ClusterWaveforms__waveform_sd:
|
||||
name: ClusterWaveforms__waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as in
|
||||
mean
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_sd__Array
|
||||
ClusterWaveforms__waveform_sd__Array:
|
||||
name: ClusterWaveforms__waveform_sd__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
Clustering:
|
||||
name: Clustering
|
||||
description: DEPRECATED Clustered spike data, whether from automatic clustering
|
||||
|
|
@ -482,21 +389,30 @@ classes:
|
|||
num:
|
||||
name: num
|
||||
description: Cluster number of each event
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
peak_over_rms:
|
||||
name: peak_over_rms
|
||||
description: Maximum ratio of waveform peak to RMS on any channel in the cluster
|
||||
(provides a basic clustering metric).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of clustered events, in seconds. This may be a link to
|
||||
times field in associated FeatureExtraction module.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.epoch
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.epoch
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.file
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.file
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -56,7 +63,10 @@ classes:
|
|||
The file can be created after the experiment was run, so this may differ
|
||||
from the experiment start time. Each modification to the nwb file adds a
|
||||
new entry to the array.'
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_modifications
|
||||
range: isodatetime
|
||||
required: true
|
||||
identifier:
|
||||
|
|
@ -198,9 +208,14 @@ classes:
|
|||
having a particular scientific goal, trials (see trials subgroup) during
|
||||
an experiment, or epochs (see epochs subgroup) deriving from analysis of
|
||||
data.
|
||||
multivalued: false
|
||||
range: NWBFile__intervals
|
||||
required: false
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
units:
|
||||
name: units
|
||||
description: Data about sorted spike units.
|
||||
|
|
@ -289,7 +304,10 @@ classes:
|
|||
name: experimenter
|
||||
description: Name of person(s) who performed the experiment. Can also specify
|
||||
roles of different people involved.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_experimenters
|
||||
range: text
|
||||
required: false
|
||||
institution:
|
||||
|
|
@ -301,7 +319,10 @@ classes:
|
|||
keywords:
|
||||
name: keywords
|
||||
description: Terms to search over.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_keywords
|
||||
range: text
|
||||
required: false
|
||||
lab:
|
||||
|
|
@ -333,7 +354,10 @@ classes:
|
|||
related_publications:
|
||||
name: related_publications
|
||||
description: Publication information. PMID, DOI, URL, etc.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_publications
|
||||
range: text
|
||||
required: false
|
||||
session_id:
|
||||
|
|
@ -576,45 +600,6 @@ classes:
|
|||
multivalued: false
|
||||
range: SweepTable
|
||||
required: false
|
||||
NWBFile__intervals:
|
||||
name: NWBFile__intervals
|
||||
description: Experimental intervals, whether that be logically distinct sub-experiments
|
||||
having a particular scientific goal, trials (see trials subgroup) during an
|
||||
experiment, or epochs (see epochs subgroup) deriving from analysis of data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: intervals
|
||||
epochs:
|
||||
name: epochs
|
||||
description: Divisions in time marking experimental stages or sub-divisions
|
||||
of a single recording session.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
trials:
|
||||
name: trials
|
||||
description: Repeated experimental events that have a logical grouping.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
invalid_times:
|
||||
name: invalid_times
|
||||
description: Time intervals that should be removed from analysis.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
time_intervals:
|
||||
name: time_intervals
|
||||
description: Optional additional table(s) for describing other experimental
|
||||
time intervals.
|
||||
multivalued: true
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
LabMetaData:
|
||||
name: LabMetaData
|
||||
description: Lab-specific meta-data.
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.icephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.icephys
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -30,8 +37,8 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Recorded voltage or current.
|
||||
multivalued: true
|
||||
range: numeric
|
||||
multivalued: false
|
||||
range: PatchClampSeries__data
|
||||
required: true
|
||||
gain:
|
||||
name: gain
|
||||
|
|
@ -41,6 +48,29 @@ classes:
|
|||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
PatchClampSeries__data:
|
||||
name: PatchClampSeries__data
|
||||
description: Recorded voltage or current.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. Actual stored
|
||||
values are not necessarily stored in these units. To access the data in
|
||||
these units, multiply 'data' by 'conversion'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
CurrentClampSeries:
|
||||
name: CurrentClampSeries
|
||||
description: Voltage data from an intracellular current-clamp recording. A corresponding
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.image
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.image
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -17,22 +24,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: GrayscaleImage__Array
|
||||
tree_root: true
|
||||
GrayscaleImage__Array:
|
||||
name: GrayscaleImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
RGBImage:
|
||||
name: RGBImage
|
||||
description: A color image.
|
||||
|
|
@ -43,28 +35,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBImage__Array
|
||||
tree_root: true
|
||||
RGBImage__Array:
|
||||
name: RGBImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RGBAImage:
|
||||
name: RGBAImage
|
||||
description: A color image with transparency.
|
||||
|
|
@ -75,28 +46,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBAImage__Array
|
||||
tree_root: true
|
||||
RGBAImage__Array:
|
||||
name: RGBAImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageSeries:
|
||||
name: ImageSeries
|
||||
description: General image data that is common between acquisition and stimulus
|
||||
|
|
@ -116,12 +66,27 @@ classes:
|
|||
name: data
|
||||
description: Binary data representing images across frames.
|
||||
multivalued: false
|
||||
range: ImageSeries__data
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: z
|
||||
dimension:
|
||||
name: dimension
|
||||
description: Number of pixels on x, y, (and z) axes.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: rank
|
||||
range: int32
|
||||
required: false
|
||||
external_file:
|
||||
|
|
@ -131,8 +96,8 @@ classes:
|
|||
in the file system as one or more image file(s). This field should NOT be
|
||||
used if the image is stored in another NWB file and that file is linked
|
||||
to this file.
|
||||
multivalued: true
|
||||
range: text
|
||||
multivalued: false
|
||||
range: ImageSeries__external_file
|
||||
required: false
|
||||
format:
|
||||
name: format
|
||||
|
|
@ -144,40 +109,41 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
ImageSeries__data:
|
||||
name: ImageSeries__data
|
||||
description: Binary data representing images across frames.
|
||||
ImageSeries__external_file:
|
||||
name: ImageSeries__external_file
|
||||
description: Paths to one or more external file(s). The field is only present
|
||||
if format='external'. This is only relevant if the image series is stored in
|
||||
the file system as one or more image file(s). This field should NOT be used
|
||||
if the image is stored in another NWB file and that file is linked to this file.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
ifabsent: string(external_file)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
equals_string: external_file
|
||||
starting_frame:
|
||||
name: starting_frame
|
||||
description: Each external image may contain one or more consecutive frames
|
||||
of the full ImageSeries. This attribute serves as an index to indicate which
|
||||
frames each file contains, to faciliate random access. The 'starting_frame'
|
||||
attribute, hence, contains a list of frame numbers within the full ImageSeries
|
||||
of the first frame of each file listed in the parent 'external_file' dataset.
|
||||
Zero-based indexing is used (hence, the first element will always be zero).
|
||||
For example, if the 'external_file' dataset has three paths to files and
|
||||
the first file has 5 frames, the second file has 10 frames, and the third
|
||||
file has 20 frames, then this attribute will have values [0, 5, 15]. If
|
||||
there is a single external file that holds all of the frames of the ImageSeries
|
||||
(and so there is a single element in the 'external_file' dataset), then
|
||||
this attribute should have value [0].
|
||||
range: int32
|
||||
array:
|
||||
name: array
|
||||
range: ImageSeries__data__Array
|
||||
ImageSeries__data__Array:
|
||||
name: ImageSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
z:
|
||||
name: z
|
||||
range: numeric
|
||||
required: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_files
|
||||
range: text
|
||||
ImageMaskSeries:
|
||||
name: ImageMaskSeries
|
||||
description: An alpha mask that is applied to a presented visual stimulus. The
|
||||
|
|
@ -217,14 +183,36 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: OpticalSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height, depth
|
||||
exact_cardinality: 3
|
||||
data:
|
||||
name: data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
multivalued: false
|
||||
range: OpticalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
orientation:
|
||||
name: orientation
|
||||
description: Description of image relative to some reference frame (e.g.,
|
||||
|
|
@ -233,72 +221,6 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
OpticalSeries__field_of_view:
|
||||
name: OpticalSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__field_of_view__Array
|
||||
OpticalSeries__field_of_view__Array:
|
||||
name: OpticalSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width, height:
|
||||
name: width, height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width, height, depth:
|
||||
name: width, height, depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
OpticalSeries__data:
|
||||
name: OpticalSeries__data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__data__Array
|
||||
OpticalSeries__data__Array:
|
||||
name: OpticalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
IndexSeries:
|
||||
name: IndexSeries
|
||||
description: Stores indices to image frames stored in an ImageSeries. The purpose
|
||||
|
|
@ -317,7 +239,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Index of the frame in the referenced ImageSeries.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int32
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.language
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: 'False'
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
description: Adapter objects to mimic the behavior of elements in the nwb-schema-language
|
||||
id: nwb.language
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.misc
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.misc
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -35,13 +42,19 @@ classes:
|
|||
feature_units:
|
||||
name: feature_units
|
||||
description: Units of each feature.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: false
|
||||
features:
|
||||
name: features
|
||||
description: Description of the features represented in TimeSeries::data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -64,19 +77,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AbstractFeatureSeries__data__Array
|
||||
AbstractFeatureSeries__data__Array:
|
||||
name: AbstractFeatureSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
AnnotationSeries:
|
||||
name: AnnotationSeries
|
||||
description: Stores user annotations made during an experiment. The data[] field
|
||||
|
|
@ -93,7 +102,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Annotations made during an experiment.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -116,7 +128,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Use values >0 if interval started, <0 if interval ended.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int8
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -176,23 +191,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: DecompositionSeries__data__Array
|
||||
DecompositionSeries__data__Array:
|
||||
name: DecompositionSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: true
|
||||
num_bands:
|
||||
name: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
DecompositionSeries__source_channels:
|
||||
name: DecompositionSeries__source_channels
|
||||
description: DynamicTableRegion pointer to the channels that this decomposition
|
||||
|
|
@ -229,33 +233,31 @@ classes:
|
|||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
multivalued: false
|
||||
range: DecompositionSeries__bands__band_limits
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
- alias: low, high
|
||||
exact_cardinality: 2
|
||||
range: float32
|
||||
required: true
|
||||
band_mean:
|
||||
name: band_mean
|
||||
description: The mean Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
band_stdev:
|
||||
name: band_stdev
|
||||
description: The standard deviation of Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
DecompositionSeries__bands__band_limits:
|
||||
name: DecompositionSeries__bands__band_limits
|
||||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(band_limits)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: band_limits
|
||||
Units:
|
||||
name: Units
|
||||
description: Data about spiking units. Event times of observed units (e.g. cell,
|
||||
|
|
@ -289,7 +291,12 @@ classes:
|
|||
name: obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
multivalued: false
|
||||
range: Units__obs_intervals
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_intervals
|
||||
- alias: start|end
|
||||
exact_cardinality: 2
|
||||
range: float64
|
||||
required: false
|
||||
electrodes_index:
|
||||
name: electrodes_index
|
||||
|
|
@ -312,14 +319,34 @@ classes:
|
|||
name: waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_mean
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_sd
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveforms:
|
||||
name: waveforms
|
||||
description: Individual waveforms for each spike on each electrode. This is
|
||||
|
|
@ -346,7 +373,11 @@ classes:
|
|||
same order as the electrodes referenced in the 'electrodes' column of this
|
||||
table. The number of samples for each waveform must be the same.
|
||||
multivalued: false
|
||||
range: Units__waveforms
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_waveforms
|
||||
- alias: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
waveforms_index:
|
||||
name: waveforms_index
|
||||
|
|
@ -407,18 +438,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals_index
|
||||
Units__obs_intervals:
|
||||
name: Units__obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(obs_intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals
|
||||
Units__electrodes_index:
|
||||
name: Units__electrodes_index
|
||||
description: Index into electrodes.
|
||||
|
|
@ -443,88 +462,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: electrodes
|
||||
Units__waveform_mean:
|
||||
name: Units__waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveform_sd:
|
||||
name: Units__waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveforms:
|
||||
name: Units__waveforms
|
||||
description: Individual waveforms for each spike on each electrode. This is a
|
||||
doubly indexed column. The 'waveforms_index' column indexes which waveforms
|
||||
in this column belong to the same spike event for a given unit, where each waveform
|
||||
was recorded from a different electrode. The 'waveforms_index_index' column
|
||||
indexes the 'waveforms_index' column to indicate which spike events belong to
|
||||
a given unit. For example, if the 'waveforms_index_index' column has values
|
||||
[2, 5, 6], then the first 2 elements of the 'waveforms_index' column correspond
|
||||
to the 2 spike events of the first unit, the next 3 elements of the 'waveforms_index'
|
||||
column correspond to the 3 spike events of the second unit, and the next 1 element
|
||||
of the 'waveforms_index' column corresponds to the 1 spike event of the third
|
||||
unit. If the 'waveforms_index' column has values [3, 6, 8, 10, 12, 13], then
|
||||
the first 3 elements of the 'waveforms' column contain the 3 spike waveforms
|
||||
that were recorded from 3 different electrodes for the first spike time of the
|
||||
first unit. See https://nwb-schema.readthedocs.io/en/stable/format_description.html#doubly-ragged-arrays
|
||||
for a graphical representation of this example. When there is only one electrode
|
||||
for each unit (i.e., each spike time is associated with a single waveform),
|
||||
then the 'waveforms_index' column will have values 1, 2, ..., N, where N is
|
||||
the number of spike events. The number of electrodes for each spike event should
|
||||
be the same within a given unit. The 'electrodes' column should be used to indicate
|
||||
which electrodes are associated with each unit, and the order of the waveforms
|
||||
within a given unit x spike event should be in the same order as the electrodes
|
||||
referenced in the 'electrodes' column of this table. The number of samples for
|
||||
each waveform must be the same.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveforms)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveforms
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveforms_index:
|
||||
name: Units__waveforms_index
|
||||
description: Index into the waveforms dataset. One value for every spike event.
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ogen
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ogen
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -20,7 +27,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Applied power for optogenetic stimulus, in watts.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ophys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ophys
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -33,39 +40,18 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: TwoPhotonSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height|depth
|
||||
exact_cardinality: 3
|
||||
tree_root: true
|
||||
TwoPhotonSeries__field_of_view:
|
||||
name: TwoPhotonSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: TwoPhotonSeries__field_of_view__Array
|
||||
TwoPhotonSeries__field_of_view__Array:
|
||||
name: TwoPhotonSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width|height:
|
||||
name: width|height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width|height|depth:
|
||||
name: width|height|depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RoiResponseSeries:
|
||||
name: RoiResponseSeries
|
||||
description: ROI responses over an imaging plane. The first dimension represents
|
||||
|
|
@ -81,8 +67,16 @@ classes:
|
|||
name: data
|
||||
description: Signals from ROIs.
|
||||
multivalued: false
|
||||
range: RoiResponseSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_ROIs
|
||||
rois:
|
||||
name: rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -91,32 +85,6 @@ classes:
|
|||
range: RoiResponseSeries__rois
|
||||
required: true
|
||||
tree_root: true
|
||||
RoiResponseSeries__data:
|
||||
name: RoiResponseSeries__data
|
||||
description: Signals from ROIs.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: RoiResponseSeries__data__Array
|
||||
RoiResponseSeries__data__Array:
|
||||
name: RoiResponseSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_ROIs:
|
||||
name: num_ROIs
|
||||
range: numeric
|
||||
required: false
|
||||
RoiResponseSeries__rois:
|
||||
name: RoiResponseSeries__rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -137,12 +105,13 @@ classes:
|
|||
for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
Fluorescence:
|
||||
name: Fluorescence
|
||||
|
|
@ -151,12 +120,13 @@ classes:
|
|||
for ROIs and for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
ImageSegmentation:
|
||||
name: ImageSegmentation
|
||||
|
|
@ -169,12 +139,13 @@ classes:
|
|||
is required and ROI names should remain consistent between them.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
tree_root: true
|
||||
PlaneSegmentation:
|
||||
name: PlaneSegmentation
|
||||
|
|
@ -191,8 +162,20 @@ classes:
|
|||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
multivalued: false
|
||||
range: PlaneSegmentation__image_mask
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- alias: num_z
|
||||
pixel_mask_index:
|
||||
name: pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -228,19 +211,6 @@ classes:
|
|||
any_of:
|
||||
- range: ImageSeries
|
||||
tree_root: true
|
||||
PlaneSegmentation__image_mask:
|
||||
name: PlaneSegmentation__image_mask
|
||||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(image_mask)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: image_mask
|
||||
PlaneSegmentation__pixel_mask_index:
|
||||
name: PlaneSegmentation__pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -270,12 +240,13 @@ classes:
|
|||
description: An imaging plane and its metadata.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
tree_root: true
|
||||
OpticalChannel:
|
||||
name: OpticalChannel
|
||||
|
|
@ -307,12 +278,13 @@ classes:
|
|||
frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
tree_root: true
|
||||
CorrectedImageStack:
|
||||
name: CorrectedImageStack
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.retinotopy
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.retinotopy
|
||||
version: 2.3.0
|
||||
imports:
|
||||
|
|
@ -55,7 +62,11 @@ classes:
|
|||
description: Two-element array describing the contents of the two response
|
||||
axis fields. Description should be something like ['altitude', 'azimuth']
|
||||
or '['radius', 'theta'].
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: axis_1, axis_2
|
||||
exact_cardinality: 2
|
||||
range: text
|
||||
required: true
|
||||
focal_depth_image:
|
||||
|
|
@ -106,19 +117,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
ImagingRetinotopy__axis_1_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_1_power_map:
|
||||
name: ImagingRetinotopy__axis_1_power_map
|
||||
description: Power response on the first measured axis. Response is scaled so
|
||||
|
|
@ -146,19 +149,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_power_map__Array
|
||||
ImagingRetinotopy__axis_1_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_phase_map:
|
||||
name: ImagingRetinotopy__axis_2_phase_map
|
||||
description: Phase response to stimulus on the second measured axis.
|
||||
|
|
@ -185,19 +180,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
ImagingRetinotopy__axis_2_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_power_map:
|
||||
name: ImagingRetinotopy__axis_2_power_map
|
||||
description: Power response on the second measured axis. Response is scaled so
|
||||
|
|
@ -225,19 +212,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_power_map__Array
|
||||
ImagingRetinotopy__axis_2_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__focal_depth_image:
|
||||
name: ImagingRetinotopy__focal_depth_image
|
||||
description: 'Gray-scale image taken with same settings/parameters (e.g., focal
|
||||
|
|
@ -274,19 +253,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__focal_depth_image__Array
|
||||
ImagingRetinotopy__focal_depth_image__Array:
|
||||
name: ImagingRetinotopy__focal_depth_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
ImagingRetinotopy__sign_map:
|
||||
name: ImagingRetinotopy__sign_map
|
||||
description: Sine of the angle between the direction of the gradient in axis_1
|
||||
|
|
@ -310,19 +281,11 @@ classes:
|
|||
range: float32
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__sign_map__Array
|
||||
ImagingRetinotopy__sign_map__Array:
|
||||
name: ImagingRetinotopy__sign_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__vasculature_image:
|
||||
name: ImagingRetinotopy__vasculature_image
|
||||
description: 'Gray-scale anatomical image of cortical surface. Array structure:
|
||||
|
|
@ -355,16 +318,8 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__vasculature_image__Array
|
||||
ImagingRetinotopy__vasculature_image__Array:
|
||||
name: ImagingRetinotopy__vasculature_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
name: core
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: true
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: 'True'
|
||||
value: core
|
||||
description: NWB namespace
|
||||
id: core
|
||||
version: 2.3.0
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -53,32 +60,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
NWBContainer:
|
||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
|
||||
|
|
@ -144,7 +144,10 @@ classes:
|
|||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: false
|
||||
control:
|
||||
|
|
@ -152,7 +155,10 @@ classes:
|
|||
description: Numerical labels that apply to each time point in data for the
|
||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: uint8
|
||||
required: false
|
||||
control_description:
|
||||
|
|
@ -160,7 +166,10 @@ classes:
|
|||
description: Description of each control value. Must be present if control
|
||||
is present. If present, control_description[0] should describe time points
|
||||
where control == 0.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
|
||||
sync:
|
||||
|
|
@ -227,27 +236,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
|
||||
|
|
@ -294,13 +302,14 @@ classes:
|
|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -59,19 +66,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
|
||||
|
|
@ -88,12 +91,13 @@ classes:
|
|||
events. BehavioralTimeSeries is for continuous data.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
tree_root: true
|
||||
BehavioralEvents:
|
||||
name: BehavioralEvents
|
||||
|
|
@ -101,12 +105,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
|
||||
name: BehavioralTimeSeries
|
||||
|
|
@ -114,36 +119,39 @@ classes:
|
|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -154,22 +162,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.device
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.device
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ecephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ecephys
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -35,8 +42,21 @@ classes:
|
|||
name: data
|
||||
description: Recorded voltage data.
|
||||
multivalued: false
|
||||
range: ElectricalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
electrodes:
|
||||
name: electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -55,47 +75,13 @@ classes:
|
|||
as native values generated by data acquisition systems. If this dataset
|
||||
is not present, then there is no channel-specific conversion factor, i.e.
|
||||
it is 1 for all channels.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_channels
|
||||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
ElectricalSeries__data:
|
||||
name: ElectricalSeries__data
|
||||
description: Recorded voltage data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. This value
|
||||
is fixed to 'volts'. Actual stored values are not necessarily stored in
|
||||
these units. To access the data in these units, multiply 'data' by 'conversion'
|
||||
and 'channel_conversion' (if present).
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ElectricalSeries__data__Array
|
||||
ElectricalSeries__data__Array:
|
||||
name: ElectricalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
ElectricalSeries__electrodes:
|
||||
name: ElectricalSeries__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -130,52 +116,31 @@ classes:
|
|||
name: data
|
||||
description: Spike waveforms.
|
||||
multivalued: false
|
||||
range: SpikeEventSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_samples
|
||||
timestamps:
|
||||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
Timestamps are required for the events. Unlike for TimeSeries, timestamps
|
||||
are required for SpikeEventSeries and are thus re-specified here.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
SpikeEventSeries__data:
|
||||
name: SpikeEventSeries__data
|
||||
description: Spike waveforms.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement for waveforms, which is fixed to 'volts'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpikeEventSeries__data__Array
|
||||
SpikeEventSeries__data__Array:
|
||||
name: SpikeEventSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: numeric
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: false
|
||||
FeatureExtraction:
|
||||
name: FeatureExtraction
|
||||
description: Features, such as PC1 and PC2, that are extracted from signals stored
|
||||
|
|
@ -191,19 +156,30 @@ classes:
|
|||
name: description
|
||||
description: Description of features (eg, ''PC1'') for each of the extracted
|
||||
features.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
features:
|
||||
name: features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
multivalued: false
|
||||
range: FeatureExtraction__features
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
- alias: num_channels
|
||||
- alias: num_features
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of events that features correspond to (can be a link).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
electrodes:
|
||||
|
|
@ -214,36 +190,6 @@ classes:
|
|||
range: FeatureExtraction__electrodes
|
||||
required: true
|
||||
tree_root: true
|
||||
FeatureExtraction__features:
|
||||
name: FeatureExtraction__features
|
||||
description: Multi-dimensional array of features extracted from each event.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(features)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: features
|
||||
array:
|
||||
name: array
|
||||
range: FeatureExtraction__features__Array
|
||||
FeatureExtraction__features__Array:
|
||||
name: FeatureExtraction__features__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_events:
|
||||
name: num_events
|
||||
range: float32
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: float32
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: float32
|
||||
required: true
|
||||
FeatureExtraction__electrodes:
|
||||
name: FeatureExtraction__electrodes
|
||||
description: DynamicTableRegion pointer to the electrodes that this time series
|
||||
|
|
@ -280,13 +226,19 @@ classes:
|
|||
corresponding to time of event. ''description'' should define what is meant
|
||||
by time of event (e.g., .25 ms before action potential peak, zero-crossing
|
||||
time, etc). The index points to each event from the raw data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Timestamps of events, in seconds.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -297,12 +249,13 @@ classes:
|
|||
during experiment acquisition.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpikeEventSeries
|
||||
tree_root: true
|
||||
FilteredEphys:
|
||||
name: FilteredEphys
|
||||
|
|
@ -319,12 +272,13 @@ classes:
|
|||
the ElectricalSeries 'filtering' attribute.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
LFP:
|
||||
name: LFP
|
||||
|
|
@ -333,12 +287,13 @@ classes:
|
|||
properties should be noted in the ElectricalSeries 'filtering' attribute.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: ElectricalSeries
|
||||
tree_root: true
|
||||
ElectrodeGroup:
|
||||
name: ElectrodeGroup
|
||||
|
|
@ -395,72 +350,24 @@ classes:
|
|||
3 is in array slot [3]). Waveforms corresponding to gaps in cluster sequence
|
||||
should be empty (e.g., zero- filled)
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_mean
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as
|
||||
in mean
|
||||
multivalued: false
|
||||
range: ClusterWaveforms__waveform_sd
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
- alias: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
tree_root: true
|
||||
ClusterWaveforms__waveform_mean:
|
||||
name: ClusterWaveforms__waveform_mean
|
||||
description: The mean waveform for each cluster, using the same indices for each
|
||||
wave as cluster numbers in the associated Clustering module (i.e, cluster 3
|
||||
is in array slot [3]). Waveforms corresponding to gaps in cluster sequence should
|
||||
be empty (e.g., zero- filled)
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_mean__Array
|
||||
ClusterWaveforms__waveform_mean__Array:
|
||||
name: ClusterWaveforms__waveform_mean__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
ClusterWaveforms__waveform_sd:
|
||||
name: ClusterWaveforms__waveform_sd
|
||||
description: Stdev of waveforms for each cluster, using the same indices as in
|
||||
mean
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
array:
|
||||
name: array
|
||||
range: ClusterWaveforms__waveform_sd__Array
|
||||
ClusterWaveforms__waveform_sd__Array:
|
||||
name: ClusterWaveforms__waveform_sd__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_clusters:
|
||||
name: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
num_samples:
|
||||
name: num_samples
|
||||
range: float32
|
||||
required: true
|
||||
Clustering:
|
||||
name: Clustering
|
||||
description: DEPRECATED Clustered spike data, whether from automatic clustering
|
||||
|
|
@ -482,21 +389,30 @@ classes:
|
|||
num:
|
||||
name: num
|
||||
description: Cluster number of each event
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: int32
|
||||
required: true
|
||||
peak_over_rms:
|
||||
name: peak_over_rms
|
||||
description: Maximum ratio of waveform peak to RMS on any channel in the cluster
|
||||
(provides a basic clustering metric).
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_clusters
|
||||
range: float32
|
||||
required: true
|
||||
times:
|
||||
name: times
|
||||
description: Times of clustered events, in seconds. This may be a link to
|
||||
times field in associated FeatureExtraction module.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_events
|
||||
range: float64
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.epoch
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.epoch
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.file
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.file
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -56,7 +63,10 @@ classes:
|
|||
The file can be created after the experiment was run, so this may differ
|
||||
from the experiment start time. Each modification to the nwb file adds a
|
||||
new entry to the array.'
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_modifications
|
||||
range: isodatetime
|
||||
required: true
|
||||
identifier:
|
||||
|
|
@ -198,9 +208,14 @@ classes:
|
|||
having a particular scientific goal, trials (see trials subgroup) during
|
||||
an experiment, or epochs (see epochs subgroup) deriving from analysis of
|
||||
data.
|
||||
multivalued: false
|
||||
range: NWBFile__intervals
|
||||
required: false
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
- range: TimeIntervals
|
||||
units:
|
||||
name: units
|
||||
description: Data about sorted spike units.
|
||||
|
|
@ -289,7 +304,10 @@ classes:
|
|||
name: experimenter
|
||||
description: Name of person(s) who performed the experiment. Can also specify
|
||||
roles of different people involved.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_experimenters
|
||||
range: text
|
||||
required: false
|
||||
institution:
|
||||
|
|
@ -301,7 +319,10 @@ classes:
|
|||
keywords:
|
||||
name: keywords
|
||||
description: Terms to search over.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_keywords
|
||||
range: text
|
||||
required: false
|
||||
lab:
|
||||
|
|
@ -333,7 +354,10 @@ classes:
|
|||
related_publications:
|
||||
name: related_publications
|
||||
description: Publication information. PMID, DOI, URL, etc.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_publications
|
||||
range: text
|
||||
required: false
|
||||
session_id:
|
||||
|
|
@ -630,45 +654,6 @@ classes:
|
|||
multivalued: false
|
||||
range: ExperimentalConditionsTable
|
||||
required: false
|
||||
NWBFile__intervals:
|
||||
name: NWBFile__intervals
|
||||
description: Experimental intervals, whether that be logically distinct sub-experiments
|
||||
having a particular scientific goal, trials (see trials subgroup) during an
|
||||
experiment, or epochs (see epochs subgroup) deriving from analysis of data.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: intervals
|
||||
epochs:
|
||||
name: epochs
|
||||
description: Divisions in time marking experimental stages or sub-divisions
|
||||
of a single recording session.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
trials:
|
||||
name: trials
|
||||
description: Repeated experimental events that have a logical grouping.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
invalid_times:
|
||||
name: invalid_times
|
||||
description: Time intervals that should be removed from analysis.
|
||||
multivalued: false
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
time_intervals:
|
||||
name: time_intervals
|
||||
description: Optional additional table(s) for describing other experimental
|
||||
time intervals.
|
||||
multivalued: true
|
||||
range: TimeIntervals
|
||||
required: false
|
||||
LabMetaData:
|
||||
name: LabMetaData
|
||||
description: Lab-specific meta-data.
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.icephys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.icephys
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -30,8 +37,8 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Recorded voltage or current.
|
||||
multivalued: true
|
||||
range: numeric
|
||||
multivalued: false
|
||||
range: PatchClampSeries__data
|
||||
required: true
|
||||
gain:
|
||||
name: gain
|
||||
|
|
@ -41,6 +48,29 @@ classes:
|
|||
range: float32
|
||||
required: false
|
||||
tree_root: true
|
||||
PatchClampSeries__data:
|
||||
name: PatchClampSeries__data
|
||||
description: Recorded voltage or current.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
unit:
|
||||
name: unit
|
||||
description: Base unit of measurement for working with the data. Actual stored
|
||||
values are not necessarily stored in these units. To access the data in
|
||||
these units, multiply 'data' by 'conversion'.
|
||||
range: text
|
||||
array:
|
||||
name: array
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
CurrentClampSeries:
|
||||
name: CurrentClampSeries
|
||||
description: Voltage data from an intracellular current-clamp recording. A corresponding
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.image
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.image
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -17,22 +24,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: GrayscaleImage__Array
|
||||
tree_root: true
|
||||
GrayscaleImage__Array:
|
||||
name: GrayscaleImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
RGBImage:
|
||||
name: RGBImage
|
||||
description: A color image.
|
||||
|
|
@ -43,28 +35,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBImage__Array
|
||||
tree_root: true
|
||||
RGBImage__Array:
|
||||
name: RGBImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RGBAImage:
|
||||
name: RGBAImage
|
||||
description: A color image with transparency.
|
||||
|
|
@ -75,28 +46,7 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: RGBAImage__Array
|
||||
tree_root: true
|
||||
RGBAImage__Array:
|
||||
name: RGBAImage__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: true
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageSeries:
|
||||
name: ImageSeries
|
||||
description: General image data that is common between acquisition and stimulus
|
||||
|
|
@ -117,12 +67,27 @@ classes:
|
|||
description: Binary data representing images across frames. If data are stored
|
||||
in an external file, this should be an empty 3D array.
|
||||
multivalued: false
|
||||
range: ImageSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: z
|
||||
dimension:
|
||||
name: dimension
|
||||
description: Number of pixels on x, y, (and z) axes.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: rank
|
||||
range: int32
|
||||
required: false
|
||||
external_file:
|
||||
|
|
@ -132,8 +97,8 @@ classes:
|
|||
in the file system as one or more image file(s). This field should NOT be
|
||||
used if the image is stored in another NWB file and that file is linked
|
||||
to this file.
|
||||
multivalued: true
|
||||
range: text
|
||||
multivalued: false
|
||||
range: ImageSeries__external_file
|
||||
required: false
|
||||
format:
|
||||
name: format
|
||||
|
|
@ -145,41 +110,41 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
ImageSeries__data:
|
||||
name: ImageSeries__data
|
||||
description: Binary data representing images across frames. If data are stored
|
||||
in an external file, this should be an empty 3D array.
|
||||
ImageSeries__external_file:
|
||||
name: ImageSeries__external_file
|
||||
description: Paths to one or more external file(s). The field is only present
|
||||
if format='external'. This is only relevant if the image series is stored in
|
||||
the file system as one or more image file(s). This field should NOT be used
|
||||
if the image is stored in another NWB file and that file is linked to this file.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
ifabsent: string(external_file)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
equals_string: external_file
|
||||
starting_frame:
|
||||
name: starting_frame
|
||||
description: Each external image may contain one or more consecutive frames
|
||||
of the full ImageSeries. This attribute serves as an index to indicate which
|
||||
frames each file contains, to faciliate random access. The 'starting_frame'
|
||||
attribute, hence, contains a list of frame numbers within the full ImageSeries
|
||||
of the first frame of each file listed in the parent 'external_file' dataset.
|
||||
Zero-based indexing is used (hence, the first element will always be zero).
|
||||
For example, if the 'external_file' dataset has three paths to files and
|
||||
the first file has 5 frames, the second file has 10 frames, and the third
|
||||
file has 20 frames, then this attribute will have values [0, 5, 15]. If
|
||||
there is a single external file that holds all of the frames of the ImageSeries
|
||||
(and so there is a single element in the 'external_file' dataset), then
|
||||
this attribute should have value [0].
|
||||
range: int32
|
||||
array:
|
||||
name: array
|
||||
range: ImageSeries__data__Array
|
||||
ImageSeries__data__Array:
|
||||
name: ImageSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
z:
|
||||
name: z
|
||||
range: numeric
|
||||
required: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_files
|
||||
range: text
|
||||
ImageMaskSeries:
|
||||
name: ImageMaskSeries
|
||||
description: An alpha mask that is applied to a presented visual stimulus. The
|
||||
|
|
@ -219,14 +184,36 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: OpticalSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width, height, depth
|
||||
exact_cardinality: 3
|
||||
data:
|
||||
name: data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
multivalued: false
|
||||
range: OpticalSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: frame
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
orientation:
|
||||
name: orientation
|
||||
description: Description of image relative to some reference frame (e.g.,
|
||||
|
|
@ -235,72 +222,6 @@ classes:
|
|||
range: text
|
||||
required: false
|
||||
tree_root: true
|
||||
OpticalSeries__field_of_view:
|
||||
name: OpticalSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__field_of_view__Array
|
||||
OpticalSeries__field_of_view__Array:
|
||||
name: OpticalSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width, height:
|
||||
name: width, height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width, height, depth:
|
||||
name: width, height, depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
OpticalSeries__data:
|
||||
name: OpticalSeries__data
|
||||
description: Images presented to subject, either grayscale or RGB
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: OpticalSeries__data__Array
|
||||
OpticalSeries__data__Array:
|
||||
name: OpticalSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
frame:
|
||||
name: frame
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
IndexSeries:
|
||||
name: IndexSeries
|
||||
description: Stores indices to image frames stored in an ImageSeries. The purpose
|
||||
|
|
@ -319,7 +240,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Index of the frame in the referenced ImageSeries.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int32
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.language
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: 'False'
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
description: Adapter objects to mimic the behavior of elements in the nwb-schema-language
|
||||
id: nwb.language
|
||||
imports:
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.misc
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.misc
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -35,13 +42,19 @@ classes:
|
|||
feature_units:
|
||||
name: feature_units
|
||||
description: Units of each feature.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: false
|
||||
features:
|
||||
name: features
|
||||
description: Description of the features represented in TimeSeries::data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_features
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -64,19 +77,15 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: AbstractFeatureSeries__data__Array
|
||||
AbstractFeatureSeries__data__Array:
|
||||
name: AbstractFeatureSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_features:
|
||||
name: num_features
|
||||
range: numeric
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_features
|
||||
AnnotationSeries:
|
||||
name: AnnotationSeries
|
||||
description: Stores user annotations made during an experiment. The data[] field
|
||||
|
|
@ -93,7 +102,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Annotations made during an experiment.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: text
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -116,7 +128,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Use values >0 if interval started, <0 if interval ended.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: int8
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
@ -176,23 +191,12 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: DecompositionSeries__data__Array
|
||||
DecompositionSeries__data__Array:
|
||||
name: DecompositionSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_channels
|
||||
- alias: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
num_channels:
|
||||
name: num_channels
|
||||
range: numeric
|
||||
required: true
|
||||
num_bands:
|
||||
name: num_bands
|
||||
range: numeric
|
||||
required: true
|
||||
DecompositionSeries__source_channels:
|
||||
name: DecompositionSeries__source_channels
|
||||
description: DynamicTableRegion pointer to the channels that this decomposition
|
||||
|
|
@ -229,33 +233,31 @@ classes:
|
|||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
multivalued: false
|
||||
range: DecompositionSeries__bands__band_limits
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
- alias: low, high
|
||||
exact_cardinality: 2
|
||||
range: float32
|
||||
required: true
|
||||
band_mean:
|
||||
name: band_mean
|
||||
description: The mean Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
band_stdev:
|
||||
name: band_stdev
|
||||
description: The standard deviation of Gaussian filters, in Hz.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_bands
|
||||
range: float32
|
||||
required: true
|
||||
DecompositionSeries__bands__band_limits:
|
||||
name: DecompositionSeries__bands__band_limits
|
||||
description: Low and high limit of each band in Hz. If it is a Gaussian filter,
|
||||
use 2 SD on either side of the center.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(band_limits)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: band_limits
|
||||
Units:
|
||||
name: Units
|
||||
description: Data about spiking units. Event times of observed units (e.g. cell,
|
||||
|
|
@ -289,7 +291,12 @@ classes:
|
|||
name: obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
multivalued: false
|
||||
range: Units__obs_intervals
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_intervals
|
||||
- alias: start|end
|
||||
exact_cardinality: 2
|
||||
range: float64
|
||||
required: false
|
||||
electrodes_index:
|
||||
name: electrodes_index
|
||||
|
|
@ -312,14 +319,34 @@ classes:
|
|||
name: waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_mean
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveform_sd:
|
||||
name: waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
multivalued: false
|
||||
range: Units__waveform_sd
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_units
|
||||
- alias: num_samples
|
||||
- alias: num_electrodes
|
||||
waveforms:
|
||||
name: waveforms
|
||||
description: Individual waveforms for each spike on each electrode. This is
|
||||
|
|
@ -346,7 +373,11 @@ classes:
|
|||
same order as the electrodes referenced in the 'electrodes' column of this
|
||||
table. The number of samples for each waveform must be the same.
|
||||
multivalued: false
|
||||
range: Units__waveforms
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_waveforms
|
||||
- alias: num_samples
|
||||
range: numeric
|
||||
required: false
|
||||
waveforms_index:
|
||||
name: waveforms_index
|
||||
|
|
@ -407,18 +438,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals_index
|
||||
Units__obs_intervals:
|
||||
name: Units__obs_intervals
|
||||
description: Observation intervals for each unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(obs_intervals)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: obs_intervals
|
||||
Units__electrodes_index:
|
||||
name: Units__electrodes_index
|
||||
description: Index into electrodes.
|
||||
|
|
@ -443,88 +462,6 @@ classes:
|
|||
range: string
|
||||
required: true
|
||||
equals_string: electrodes
|
||||
Units__waveform_mean:
|
||||
name: Units__waveform_mean
|
||||
description: Spike waveform mean for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_mean)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_mean
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveform_sd:
|
||||
name: Units__waveform_sd
|
||||
description: Spike waveform standard deviation for each spike unit.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveform_sd)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveform_sd
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveforms:
|
||||
name: Units__waveforms
|
||||
description: Individual waveforms for each spike on each electrode. This is a
|
||||
doubly indexed column. The 'waveforms_index' column indexes which waveforms
|
||||
in this column belong to the same spike event for a given unit, where each waveform
|
||||
was recorded from a different electrode. The 'waveforms_index_index' column
|
||||
indexes the 'waveforms_index' column to indicate which spike events belong to
|
||||
a given unit. For example, if the 'waveforms_index_index' column has values
|
||||
[2, 5, 6], then the first 2 elements of the 'waveforms_index' column correspond
|
||||
to the 2 spike events of the first unit, the next 3 elements of the 'waveforms_index'
|
||||
column correspond to the 3 spike events of the second unit, and the next 1 element
|
||||
of the 'waveforms_index' column corresponds to the 1 spike event of the third
|
||||
unit. If the 'waveforms_index' column has values [3, 6, 8, 10, 12, 13], then
|
||||
the first 3 elements of the 'waveforms' column contain the 3 spike waveforms
|
||||
that were recorded from 3 different electrodes for the first spike time of the
|
||||
first unit. See https://nwb-schema.readthedocs.io/en/stable/format_description.html#doubly-ragged-arrays
|
||||
for a graphical representation of this example. When there is only one electrode
|
||||
for each unit (i.e., each spike time is associated with a single waveform),
|
||||
then the 'waveforms_index' column will have values 1, 2, ..., N, where N is
|
||||
the number of spike events. The number of electrodes for each spike event should
|
||||
be the same within a given unit. The 'electrodes' column should be used to indicate
|
||||
which electrodes are associated with each unit, and the order of the waveforms
|
||||
within a given unit x spike event should be in the same order as the electrodes
|
||||
referenced in the 'electrodes' column of this table. The number of samples for
|
||||
each waveform must be the same.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(waveforms)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: waveforms
|
||||
sampling_rate:
|
||||
name: sampling_rate
|
||||
description: Sampling rate, in hertz.
|
||||
range: float32
|
||||
unit:
|
||||
name: unit
|
||||
description: Unit of measurement. This value is fixed to 'volts'.
|
||||
range: text
|
||||
Units__waveforms_index:
|
||||
name: Units__waveforms_index
|
||||
description: Index into the waveforms dataset. One value for every spike event.
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ogen
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ogen
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -20,7 +27,10 @@ classes:
|
|||
data:
|
||||
name: data
|
||||
description: Applied power for optogenetic stimulus, in watts.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
tree_root: true
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.ophys
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.ophys
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -33,39 +40,18 @@ classes:
|
|||
name: field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
multivalued: false
|
||||
range: TwoPhotonSeries__field_of_view
|
||||
range: float32
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: width|height|depth
|
||||
exact_cardinality: 3
|
||||
tree_root: true
|
||||
TwoPhotonSeries__field_of_view:
|
||||
name: TwoPhotonSeries__field_of_view
|
||||
description: Width, height and depth of image, or imaged area, in meters.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(field_of_view)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: field_of_view
|
||||
array:
|
||||
name: array
|
||||
range: TwoPhotonSeries__field_of_view__Array
|
||||
TwoPhotonSeries__field_of_view__Array:
|
||||
name: TwoPhotonSeries__field_of_view__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
width|height:
|
||||
name: width|height
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
width|height|depth:
|
||||
name: width|height|depth
|
||||
range: float32
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
RoiResponseSeries:
|
||||
name: RoiResponseSeries
|
||||
description: ROI responses over an imaging plane. The first dimension represents
|
||||
|
|
@ -81,8 +67,16 @@ classes:
|
|||
name: data
|
||||
description: Signals from ROIs.
|
||||
multivalued: false
|
||||
range: RoiResponseSeries__data
|
||||
range: numeric
|
||||
required: true
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_ROIs
|
||||
rois:
|
||||
name: rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -91,32 +85,6 @@ classes:
|
|||
range: RoiResponseSeries__rois
|
||||
required: true
|
||||
tree_root: true
|
||||
RoiResponseSeries__data:
|
||||
name: RoiResponseSeries__data
|
||||
description: Signals from ROIs.
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(data)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: data
|
||||
array:
|
||||
name: array
|
||||
range: RoiResponseSeries__data__Array
|
||||
RoiResponseSeries__data__Array:
|
||||
name: RoiResponseSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
num_ROIs:
|
||||
name: num_ROIs
|
||||
range: numeric
|
||||
required: false
|
||||
RoiResponseSeries__rois:
|
||||
name: RoiResponseSeries__rois
|
||||
description: DynamicTableRegion referencing into an ROITable containing information
|
||||
|
|
@ -137,12 +105,13 @@ classes:
|
|||
for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
Fluorescence:
|
||||
name: Fluorescence
|
||||
|
|
@ -151,12 +120,13 @@ classes:
|
|||
for ROIs and for image planes).
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: RoiResponseSeries
|
||||
tree_root: true
|
||||
ImageSegmentation:
|
||||
name: ImageSegmentation
|
||||
|
|
@ -169,12 +139,13 @@ classes:
|
|||
is required and ROI names should remain consistent between them.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: PlaneSegmentation
|
||||
tree_root: true
|
||||
PlaneSegmentation:
|
||||
name: PlaneSegmentation
|
||||
|
|
@ -191,8 +162,20 @@ classes:
|
|||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
multivalued: false
|
||||
range: PlaneSegmentation__image_mask
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_roi
|
||||
- alias: num_x
|
||||
- alias: num_y
|
||||
- alias: num_z
|
||||
pixel_mask_index:
|
||||
name: pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -228,19 +211,6 @@ classes:
|
|||
any_of:
|
||||
- range: ImageSeries
|
||||
tree_root: true
|
||||
PlaneSegmentation__image_mask:
|
||||
name: PlaneSegmentation__image_mask
|
||||
description: ROI masks for each ROI. Each image mask is the size of the original
|
||||
imaging plane (or volume) and members of the ROI are finite non-zero.
|
||||
is_a: VectorData
|
||||
attributes:
|
||||
name:
|
||||
name: name
|
||||
ifabsent: string(image_mask)
|
||||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
equals_string: image_mask
|
||||
PlaneSegmentation__pixel_mask_index:
|
||||
name: PlaneSegmentation__pixel_mask_index
|
||||
description: Index into pixel_mask.
|
||||
|
|
@ -270,12 +240,13 @@ classes:
|
|||
description: An imaging plane and its metadata.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: OpticalChannel
|
||||
tree_root: true
|
||||
OpticalChannel:
|
||||
name: OpticalChannel
|
||||
|
|
@ -307,12 +278,13 @@ classes:
|
|||
frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: CorrectedImageStack
|
||||
tree_root: true
|
||||
CorrectedImageStack:
|
||||
name: CorrectedImageStack
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.retinotopy
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.retinotopy
|
||||
version: 2.4.0
|
||||
imports:
|
||||
|
|
@ -55,7 +62,11 @@ classes:
|
|||
description: Two-element array describing the contents of the two response
|
||||
axis fields. Description should be something like ['altitude', 'azimuth']
|
||||
or '['radius', 'theta'].
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: axis_1, axis_2
|
||||
exact_cardinality: 2
|
||||
range: text
|
||||
required: true
|
||||
focal_depth_image:
|
||||
|
|
@ -106,19 +117,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
ImagingRetinotopy__axis_1_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_1_power_map:
|
||||
name: ImagingRetinotopy__axis_1_power_map
|
||||
description: Power response on the first measured axis. Response is scaled so
|
||||
|
|
@ -146,19 +149,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_1_power_map__Array
|
||||
ImagingRetinotopy__axis_1_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_1_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_phase_map:
|
||||
name: ImagingRetinotopy__axis_2_phase_map
|
||||
description: Phase response to stimulus on the second measured axis.
|
||||
|
|
@ -185,19 +180,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
ImagingRetinotopy__axis_2_phase_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_phase_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__axis_2_power_map:
|
||||
name: ImagingRetinotopy__axis_2_power_map
|
||||
description: Power response on the second measured axis. Response is scaled so
|
||||
|
|
@ -225,19 +212,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__axis_2_power_map__Array
|
||||
ImagingRetinotopy__axis_2_power_map__Array:
|
||||
name: ImagingRetinotopy__axis_2_power_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__focal_depth_image:
|
||||
name: ImagingRetinotopy__focal_depth_image
|
||||
description: 'Gray-scale image taken with same settings/parameters (e.g., focal
|
||||
|
|
@ -274,19 +253,11 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__focal_depth_image__Array
|
||||
ImagingRetinotopy__focal_depth_image__Array:
|
||||
name: ImagingRetinotopy__focal_depth_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
ImagingRetinotopy__sign_map:
|
||||
name: ImagingRetinotopy__sign_map
|
||||
description: Sine of the angle between the direction of the gradient in axis_1
|
||||
|
|
@ -310,19 +281,11 @@ classes:
|
|||
range: float32
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__sign_map__Array
|
||||
ImagingRetinotopy__sign_map__Array:
|
||||
name: ImagingRetinotopy__sign_map__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: float32
|
||||
required: true
|
||||
ImagingRetinotopy__vasculature_image:
|
||||
name: ImagingRetinotopy__vasculature_image
|
||||
description: 'Gray-scale anatomical image of cortical surface. Array structure:
|
||||
|
|
@ -355,16 +318,8 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: ImagingRetinotopy__vasculature_image__Array
|
||||
ImagingRetinotopy__vasculature_image__Array:
|
||||
name: ImagingRetinotopy__vasculature_image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_rows:
|
||||
name: num_rows
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_rows
|
||||
- alias: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
num_cols:
|
||||
name: num_cols
|
||||
range: uint16
|
||||
required: true
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
name: core
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: true
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: 'True'
|
||||
value: core
|
||||
description: NWB namespace
|
||||
id: core
|
||||
version: 2.4.0
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.base
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.base
|
||||
version: 2.5.0
|
||||
imports:
|
||||
|
|
@ -53,32 +60,25 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: Image__Array
|
||||
range: numeric
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b
|
||||
exact_cardinality: 3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: x
|
||||
- alias: y
|
||||
- alias: r, g, b, a
|
||||
exact_cardinality: 4
|
||||
tree_root: true
|
||||
Image__Array:
|
||||
name: Image__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: true
|
||||
y:
|
||||
name: y
|
||||
range: numeric
|
||||
required: true
|
||||
r, g, b:
|
||||
name: r, g, b
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
r, g, b, a:
|
||||
name: r, g, b, a
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 4
|
||||
maximum_cardinality: 4
|
||||
ImageReferences:
|
||||
name: ImageReferences
|
||||
description: Ordered dataset of references to Image objects.
|
||||
|
|
@ -89,18 +89,13 @@ classes:
|
|||
identifier: true
|
||||
range: string
|
||||
required: true
|
||||
array:
|
||||
name: array
|
||||
range: ImageReferences__Array
|
||||
tree_root: true
|
||||
ImageReferences__Array:
|
||||
name: ImageReferences__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_images:
|
||||
name: num_images
|
||||
image:
|
||||
name: image
|
||||
description: Ordered dataset of references to Image objects.
|
||||
multivalued: true
|
||||
range: Image
|
||||
required: true
|
||||
tree_root: true
|
||||
NWBContainer:
|
||||
name: NWBContainer
|
||||
description: An abstract data type for a generic container storing collections
|
||||
|
|
@ -166,7 +161,10 @@ classes:
|
|||
name: timestamps
|
||||
description: Timestamps for samples stored in data, in seconds, relative to
|
||||
the common experiment master-clock stored in NWBFile.timestamps_reference_time.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: float64
|
||||
required: false
|
||||
control:
|
||||
|
|
@ -174,7 +172,10 @@ classes:
|
|||
description: Numerical labels that apply to each time point in data for the
|
||||
purpose of querying and slicing data by these values. If present, the length
|
||||
of this array should be the same size as the first dimension of data.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
range: uint8
|
||||
required: false
|
||||
control_description:
|
||||
|
|
@ -182,7 +183,10 @@ classes:
|
|||
description: Description of each control value. Must be present if control
|
||||
is present. If present, control_description[0] should describe time points
|
||||
where control == 0.
|
||||
multivalued: true
|
||||
multivalued: false
|
||||
array:
|
||||
dimensions:
|
||||
- alias: num_control_values
|
||||
range: text
|
||||
required: false
|
||||
sync:
|
||||
|
|
@ -257,27 +261,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: TimeSeries__data__Array
|
||||
TimeSeries__data__Array:
|
||||
name: TimeSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: AnyType
|
||||
required: true
|
||||
num_DIM2:
|
||||
name: num_DIM2
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM3:
|
||||
name: num_DIM3
|
||||
range: AnyType
|
||||
required: false
|
||||
num_DIM4:
|
||||
name: num_DIM4
|
||||
range: AnyType
|
||||
required: false
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: num_DIM2
|
||||
- alias: num_DIM3
|
||||
- alias: num_DIM4
|
||||
TimeSeries__starting_time:
|
||||
name: TimeSeries__starting_time
|
||||
description: Timestamp of the first sample in seconds. When timestamps are uniformly
|
||||
|
|
@ -324,13 +327,14 @@ classes:
|
|||
description: A collection of processed data.
|
||||
is_a: NWBContainer
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: NWBDataInterface
|
||||
- range: DynamicTable
|
||||
tree_root: true
|
||||
Images:
|
||||
name: Images
|
||||
|
|
|
|||
|
|
@ -1,4 +1,11 @@
|
|||
name: core.nwb.behavior
|
||||
annotations:
|
||||
is_namespace:
|
||||
tag: is_namespace
|
||||
value: false
|
||||
namespace:
|
||||
tag: namespace
|
||||
value: core
|
||||
id: core.nwb.behavior
|
||||
version: 2.5.0
|
||||
imports:
|
||||
|
|
@ -60,33 +67,26 @@ classes:
|
|||
range: text
|
||||
array:
|
||||
name: array
|
||||
range: SpatialSeries__data__Array
|
||||
SpatialSeries__data__Array:
|
||||
name: SpatialSeries__data__Array
|
||||
is_a: Arraylike
|
||||
attributes:
|
||||
num_times:
|
||||
name: num_times
|
||||
range: numeric
|
||||
required: true
|
||||
x:
|
||||
name: x
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 1
|
||||
maximum_cardinality: 1
|
||||
x,y:
|
||||
name: x,y
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 2
|
||||
maximum_cardinality: 2
|
||||
x,y,z:
|
||||
name: x,y,z
|
||||
range: numeric
|
||||
required: false
|
||||
minimum_cardinality: 3
|
||||
maximum_cardinality: 3
|
||||
any_of:
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: x
|
||||
exact_cardinality: 1
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: x,y
|
||||
exact_cardinality: 2
|
||||
- array:
|
||||
dimensions:
|
||||
- alias: num_times
|
||||
- alias: x,y,z
|
||||
exact_cardinality: 3
|
||||
BehavioralEpochs:
|
||||
name: BehavioralEpochs
|
||||
description: TimeSeries for storing behavioral epochs. The objective of this
|
||||
|
|
@ -103,12 +103,13 @@ classes:
|
|||
events. BehavioralTimeSeries is for continuous data.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: IntervalSeries
|
||||
tree_root: true
|
||||
BehavioralEvents:
|
||||
name: BehavioralEvents
|
||||
|
|
@ -116,12 +117,13 @@ classes:
|
|||
for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
BehavioralTimeSeries:
|
||||
name: BehavioralTimeSeries
|
||||
|
|
@ -129,36 +131,39 @@ classes:
|
|||
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
PupilTracking:
|
||||
name: PupilTracking
|
||||
description: Eye-tracking data, representing pupil size.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: TimeSeries
|
||||
tree_root: true
|
||||
EyeTracking:
|
||||
name: EyeTracking
|
||||
description: Eye-tracking data, representing direction of gaze.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
CompassDirection:
|
||||
name: CompassDirection
|
||||
|
|
@ -169,22 +174,24 @@ classes:
|
|||
be radians or degrees.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
Position:
|
||||
name: Position
|
||||
description: Position data, whether along the x, x/y or x/y/z axis.
|
||||
is_a: NWBDataInterface
|
||||
attributes:
|
||||
- name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
children:
|
||||
name: children
|
||||
multivalued: true
|
||||
inlined: true
|
||||
inlined_as_list: false
|
||||
any_of:
|
||||
- range: SpatialSeries
|
||||
tree_root: true
|
||||
|
|
|
|||
Some files were not shown because too many files have changed in this diff Show more
Loading…
Reference in a new issue