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sneakers-the-rat 2024-08-20 23:12:01 -07:00
parent fe7e9f89ca
commit cc334ae195
Signed by untrusted user who does not match committer: jonny
GPG key ID: 6DCB96EF1E4D232D
2 changed files with 10 additions and 6 deletions
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6
nwb_linkml/src/nwb_linkml/generators/pydantic.py
View file

@ -15,8 +15,8 @@ from typing import ClassVar, Dict, List, Optional, Tuple
from linkml.generators import PydanticGenerator from linkml.generators import PydanticGenerator
from linkml.generators.pydanticgen.array import ArrayRepresentation, NumpydanticArray from linkml.generators.pydanticgen.array import ArrayRepresentation, NumpydanticArray
from linkml.generators.pydanticgen.build import ClassResult, SlotResult from linkml.generators.pydanticgen.build import ClassResult, SlotResult
from linkml.generators.pydanticgen.template import Import, Imports, PydanticModule
from linkml.generators.pydanticgen.pydanticgen import SplitMode from linkml.generators.pydanticgen.pydanticgen import SplitMode
from linkml.generators.pydanticgen.template import Import, Imports, PydanticModule
from linkml_runtime.linkml_model.meta import ( from linkml_runtime.linkml_model.meta import (
ArrayExpression, ArrayExpression,
SchemaDefinition, SchemaDefinition,
@ -96,6 +96,10 @@ class NWBPydanticGenerator(PydanticGenerator):
raise ValueError("Slot cannot have both range and any_of defined") raise ValueError("Slot cannot have both range and any_of defined")
def render(self) -> PydanticModule: def render(self) -> PydanticModule:
"""
Override of super's render method to switch the split_mode before generation depending
on whether it's a namespace schema or not
"""
is_namespace = False is_namespace = False
ns_annotation = self.schemaview.schema.annotations.get("is_namespace", None) ns_annotation = self.schemaview.schema.annotations.get("is_namespace", None)
if ns_annotation: if ns_annotation:

10
nwb_linkml/src/nwb_linkml/providers/pydantic.py
View file

@ -3,14 +3,14 @@ Provider for pydantic models.
""" """
import importlib import importlib
import multiprocessing as mp
import re import re
import sys import sys
from importlib.abc import MetaPathFinder from importlib.abc import MetaPathFinder
from importlib.machinery import ModuleSpec from importlib.machinery import ModuleSpec
from pathlib import Path from pathlib import Path
from types import ModuleType from types import ModuleType
from typing import List, Optional, Type, TYPE_CHECKING from typing import TYPE_CHECKING, List, Optional, Type
import multiprocessing as mp
from linkml.generators.pydanticgen.pydanticgen import SplitMode, _ensure_inits, _import_to_path from linkml.generators.pydanticgen.pydanticgen import SplitMode, _ensure_inits, _import_to_path
from pydantic import BaseModel from pydantic import BaseModel
@ -179,7 +179,7 @@ class PydanticProvider(Provider):
res.append(serialized) res.append(serialized)
# then each of the other schemas :) # then each of the other schemas :)
imported_schema: dict[str, "SchemaDefinition"] = { imported_schema: dict[str, SchemaDefinition] = {
gen.generate_module_import(sch): sch for sch in gen.schemaview.schema_map.values() gen.generate_module_import(sch): sch for sch in gen.schemaview.schema_map.values()
} }
generated_imports = [i for i in rendered.python_imports if i.schema] generated_imports = [i for i in rendered.python_imports if i.schema]
@ -208,10 +208,10 @@ class PydanticProvider(Provider):
with mp.Pool(min(mp.cpu_count(), len(tasks))) as pool: with mp.Pool(min(mp.cpu_count(), len(tasks))) as pool:
mp_results = [pool.apply_async(self._generate_single, t) for t in tasks] mp_results = [pool.apply_async(self._generate_single, t) for t in tasks]
for result in mp_results: for result in mp_results:
res.append(result.get()) res.append(result.get()) # noqa: PERF401 - false positive
else: else:
for task in tasks: for task in tasks:
res.append(self._generate_single(*task)) res.append(self._generate_single(*task)) # noqa: PERF401 - false positive
# make __init__.py files if we generated any files # make __init__.py files if we generated any files
if len(module_paths) > 0: if len(module_paths) > 0: