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update models with shorter names

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This commit is contained in:
sneakers-the-rat 2024-08-05 14:19:03 -07:00
parent 9bfee3548e
commit e72c860edd
Signed by untrusted user who does not match committer: jonny
GPG key ID: 6DCB96EF1E4D232D
30 changed files with 280 additions and 280 deletions
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24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_0/core_nwb_file.py
View file

@ -256,7 +256,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -284,10 +284,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -302,7 +302,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -357,7 +357,7 @@ class Subject(NWBContainer):
)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -376,12 +376,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -516,7 +516,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -549,8 +549,8 @@ class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
GeneralSourceScript.model_rebuild()
Subject.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_0/namespace.py
View file

@ -128,11 +128,11 @@ from ...core.v2_2_0.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
GeneralSourceScript,
Subject,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
)
from ...core.v2_2_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_1/core_nwb_file.py
View file

@ -256,7 +256,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -284,10 +284,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -302,7 +302,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -357,7 +357,7 @@ class Subject(NWBContainer):
)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -376,12 +376,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -516,7 +516,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -549,8 +549,8 @@ class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
GeneralSourceScript.model_rebuild()
Subject.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_1/namespace.py
View file

@ -128,11 +128,11 @@ from ...core.v2_2_1.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
GeneralSourceScript,
Subject,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
)
from ...core.v2_2_1.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_2/core_nwb_file.py
View file

@ -256,7 +256,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -284,10 +284,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -302,7 +302,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -357,7 +357,7 @@ class Subject(NWBContainer):
)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -376,12 +376,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -516,7 +516,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -549,8 +549,8 @@ class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
GeneralSourceScript.model_rebuild()
Subject.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_2/namespace.py
View file

@ -127,11 +127,11 @@ from ...core.v2_2_2.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
GeneralSourceScript,
Subject,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
)
from ...core.v2_2_2.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_4/core_nwb_file.py
View file

@ -272,7 +272,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -300,10 +300,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -318,7 +318,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -335,7 +335,7 @@ class NWBFileGeneralSourceScript(ConfiguredBaseModel):
value: str = Field(...)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -354,12 +354,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -494,7 +494,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -575,9 +575,9 @@ ScratchData.model_rebuild()
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralSourceScript.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()
LabMetaData.model_rebuild()
Subject.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_4/namespace.py
View file

@ -134,10 +134,10 @@ from ...core.v2_2_4.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralSourceScript,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
LabMetaData,
Subject,
)

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_5/core_nwb_file.py
View file

@ -272,7 +272,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -300,10 +300,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -318,7 +318,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -335,7 +335,7 @@ class NWBFileGeneralSourceScript(ConfiguredBaseModel):
value: str = Field(...)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -354,12 +354,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -494,7 +494,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -575,9 +575,9 @@ ScratchData.model_rebuild()
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralSourceScript.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()
LabMetaData.model_rebuild()
Subject.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_2_5/namespace.py
View file

@ -134,10 +134,10 @@ from ...core.v2_2_5.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralSourceScript,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
LabMetaData,
Subject,
)

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_3_0/core_nwb_file.py
View file

@ -272,7 +272,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -300,10 +300,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -318,7 +318,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -335,7 +335,7 @@ class NWBFileGeneralSourceScript(ConfiguredBaseModel):
value: str = Field(...)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -354,12 +354,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -491,7 +491,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -573,9 +573,9 @@ ScratchData.model_rebuild()
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralSourceScript.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()
LabMetaData.model_rebuild()
Subject.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_3_0/namespace.py
View file

@ -137,10 +137,10 @@ from ...core.v2_3_0.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralSourceScript,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
LabMetaData,
Subject,
)

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_4_0/core_nwb_file.py
View file

@ -280,7 +280,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -308,10 +308,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -326,7 +326,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -343,7 +343,7 @@ class NWBFileGeneralSourceScript(ConfiguredBaseModel):
value: str = Field(...)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -362,12 +362,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -499,7 +499,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -602,9 +602,9 @@ ScratchData.model_rebuild()
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralSourceScript.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()
LabMetaData.model_rebuild()
Subject.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_4_0/namespace.py
View file

@ -150,10 +150,10 @@ from ...core.v2_4_0.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralSourceScript,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
LabMetaData,
Subject,
)

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_5_0/core_nwb_file.py
View file

@ -283,7 +283,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -311,10 +311,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -329,7 +329,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -346,7 +346,7 @@ class NWBFileGeneralSourceScript(ConfiguredBaseModel):
value: str = Field(...)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -365,12 +365,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -502,7 +502,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -605,9 +605,9 @@ ScratchData.model_rebuild()
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralSourceScript.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()
LabMetaData.model_rebuild()
Subject.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_5_0/namespace.py
View file

@ -151,10 +151,10 @@ from ...core.v2_5_0.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralSourceScript,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
LabMetaData,
Subject,
)

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_6_0_alpha/core_nwb_file.py
View file

@ -283,7 +283,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -311,10 +311,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -329,7 +329,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -346,7 +346,7 @@ class NWBFileGeneralSourceScript(ConfiguredBaseModel):
value: str = Field(...)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -365,12 +365,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -502,7 +502,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -623,10 +623,10 @@ ScratchData.model_rebuild()
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralSourceScript.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()
LabMetaData.model_rebuild()
Subject.model_rebuild()
SubjectAge.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_6_0_alpha/namespace.py
View file

@ -152,10 +152,10 @@ from ...core.v2_6_0_alpha.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralSourceScript,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
LabMetaData,
Subject,
SubjectAge,

24
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_7_0/core_nwb_file.py
View file

@ -291,7 +291,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Description of slices, including information about preparation thickness, orientation, temperature, and bath solution.""",
)
source_script: Optional[NWBFileGeneralSourceScript] = Field(
source_script: Optional[GeneralSourceScript] = Field(
None,
description="""Script file or link to public source code used to create this NWB file.""",
)
@ -319,10 +319,10 @@ class NWBFileGeneral(ConfiguredBaseModel):
None,
description="""Information about the animal or person from which the data was measured.""",
)
extracellular_ephys: Optional[NWBFileGeneralExtracellularEphys] = Field(
extracellular_ephys: Optional[GeneralExtracellularEphys] = Field(
None, description="""Metadata related to extracellular electrophysiology."""
)
intracellular_ephys: Optional[NWBFileGeneralIntracellularEphys] = Field(
intracellular_ephys: Optional[GeneralIntracellularEphys] = Field(
None, description="""Metadata related to intracellular electrophysiology."""
)
optogenetics: Optional[List[OptogeneticStimulusSite]] = Field(
@ -337,7 +337,7 @@ class NWBFileGeneral(ConfiguredBaseModel):
)
class NWBFileGeneralSourceScript(ConfiguredBaseModel):
class GeneralSourceScript(ConfiguredBaseModel):
"""
Script file or link to public source code used to create this NWB file.
"""
@ -354,7 +354,7 @@ class NWBFileGeneralSourceScript(ConfiguredBaseModel):
value: str = Field(...)
class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
class GeneralExtracellularEphys(ConfiguredBaseModel):
"""
Metadata related to extracellular electrophysiology.
"""
@ -373,12 +373,12 @@ class NWBFileGeneralExtracellularEphys(ConfiguredBaseModel):
electrode_group: Optional[List[ElectrodeGroup]] = Field(
None, description="""Physical group of electrodes."""
)
electrodes: Optional[NWBFileGeneralExtracellularEphysElectrodes] = Field(
electrodes: Optional[ExtracellularEphysElectrodes] = Field(
None, description="""A table of all electrodes (i.e. channels) used for recording."""
)
class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
class ExtracellularEphysElectrodes(DynamicTable):
"""
A table of all electrodes (i.e. channels) used for recording.
"""
@ -510,7 +510,7 @@ class NWBFileGeneralExtracellularEphysElectrodes(DynamicTable):
)
class NWBFileGeneralIntracellularEphys(ConfiguredBaseModel):
class GeneralIntracellularEphys(ConfiguredBaseModel):
"""
Metadata related to intracellular electrophysiology.
"""
@ -631,10 +631,10 @@ ScratchData.model_rebuild()
NWBFile.model_rebuild()
NWBFileStimulus.model_rebuild()
NWBFileGeneral.model_rebuild()
NWBFileGeneralSourceScript.model_rebuild()
NWBFileGeneralExtracellularEphys.model_rebuild()
NWBFileGeneralExtracellularEphysElectrodes.model_rebuild()
NWBFileGeneralIntracellularEphys.model_rebuild()
GeneralSourceScript.model_rebuild()
GeneralExtracellularEphys.model_rebuild()
ExtracellularEphysElectrodes.model_rebuild()
GeneralIntracellularEphys.model_rebuild()
LabMetaData.model_rebuild()
Subject.model_rebuild()
SubjectAge.model_rebuild()

8
nwb_linkml/src/nwb_linkml/models/pydantic/core/v2_7_0/namespace.py
View file

@ -153,10 +153,10 @@ from ...core.v2_7_0.core_nwb_file import (
NWBFile,
NWBFileStimulus,
NWBFileGeneral,
NWBFileGeneralSourceScript,
NWBFileGeneralExtracellularEphys,
NWBFileGeneralExtracellularEphysElectrodes,
NWBFileGeneralIntracellularEphys,
GeneralSourceScript,
GeneralExtracellularEphys,
ExtracellularEphysElectrodes,
GeneralIntracellularEphys,
LabMetaData,
Subject,
SubjectAge,

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_0/core.nwb.file.yaml
View file

@ -359,7 +359,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -408,13 +408,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -433,8 +433,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -513,8 +513,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -532,11 +532,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -653,8 +653,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_1/core.nwb.file.yaml
View file

@ -359,7 +359,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -408,13 +408,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -433,8 +433,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -513,8 +513,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -532,11 +532,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -653,8 +653,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_2/core.nwb.file.yaml
View file

@ -359,7 +359,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -408,13 +408,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -433,8 +433,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -513,8 +513,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -532,11 +532,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -653,8 +653,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_4/core.nwb.file.yaml
View file

@ -373,7 +373,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -422,13 +422,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -447,8 +447,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -466,8 +466,8 @@ classes:
name: value
range: text
required: true
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -485,11 +485,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -606,8 +606,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_2_5/core.nwb.file.yaml
View file

@ -373,7 +373,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -422,13 +422,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -447,8 +447,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -466,8 +466,8 @@ classes:
name: value
range: text
required: true
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -485,11 +485,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -606,8 +606,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_3_0/core.nwb.file.yaml
View file

@ -373,7 +373,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -422,13 +422,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -447,8 +447,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -466,8 +466,8 @@ classes:
name: value
range: text
required: true
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -485,11 +485,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -607,8 +607,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_4_0/core.nwb.file.yaml
View file

@ -373,7 +373,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -422,13 +422,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -447,8 +447,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -466,8 +466,8 @@ classes:
name: value
range: text
required: true
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -485,11 +485,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -607,8 +607,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_5_0/core.nwb.file.yaml
View file

@ -374,7 +374,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -423,13 +423,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -448,8 +448,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -467,8 +467,8 @@ classes:
name: value
range: text
required: true
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -486,11 +486,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -610,8 +610,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_6_0_alpha/core.nwb.file.yaml
View file

@ -374,7 +374,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -423,13 +423,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -448,8 +448,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -467,8 +467,8 @@ classes:
name: value
range: text
required: true
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -486,11 +486,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -610,8 +610,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name:

24
nwb_linkml/src/nwb_linkml/schema/linkml/core/v2_7_0/core.nwb.file.yaml
View file

@ -376,7 +376,7 @@ classes:
name: source_script
description: Script file or link to public source code used to create this
NWB file.
range: NWBFile__general__source_script
range: general__source_script
required: false
multivalued: false
stimulus:
@ -425,13 +425,13 @@ classes:
extracellular_ephys:
name: extracellular_ephys
description: Metadata related to extracellular electrophysiology.
range: NWBFile__general__extracellular_ephys
range: general__extracellular_ephys
required: false
multivalued: false
intracellular_ephys:
name: intracellular_ephys
description: Metadata related to intracellular electrophysiology.
range: NWBFile__general__intracellular_ephys
range: general__intracellular_ephys
required: false
multivalued: false
optogenetics:
@ -450,8 +450,8 @@ classes:
inlined_as_list: false
any_of:
- range: ImagingPlane
NWBFile__general__source_script:
name: NWBFile__general__source_script
general__source_script:
name: general__source_script
description: Script file or link to public source code used to create this NWB
file.
attributes:
@ -469,8 +469,8 @@ classes:
name: value
range: text
required: true
NWBFile__general__extracellular_ephys:
name: NWBFile__general__extracellular_ephys
general__extracellular_ephys:
name: general__extracellular_ephys
description: Metadata related to extracellular electrophysiology.
attributes:
name:
@ -488,11 +488,11 @@ classes:
electrodes:
name: electrodes
description: A table of all electrodes (i.e. channels) used for recording.
range: NWBFile__general__extracellular_ephys__electrodes
range: extracellular_ephys__electrodes
required: false
multivalued: false
NWBFile__general__extracellular_ephys__electrodes:
name: NWBFile__general__extracellular_ephys__electrodes
extracellular_ephys__electrodes:
name: extracellular_ephys__electrodes
description: A table of all electrodes (i.e. channels) used for recording.
is_a: DynamicTable
attributes:
@ -612,8 +612,8 @@ classes:
range: text
required: false
multivalued: false
NWBFile__general__intracellular_ephys:
name: NWBFile__general__intracellular_ephys
general__intracellular_ephys:
name: general__intracellular_ephys
description: Metadata related to intracellular electrophysiology.
attributes:
name: