mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-09-19 15:34:28 +00:00
update branch for linkml
This commit is contained in:
parent
1920c9f292
commit
ec843a508b
GPG key ID:
6DCB96EF1E4D232D
2 changed files with 185 additions and 321 deletions
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@ -5,7 +5,7 @@
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groups = ["default", "dev", "tests"]
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@ -96,44 +96,6 @@ files = [
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"msgpack",
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"ndindex>=1.4",
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"numexpr",
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"numpy>=1.20.3",
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"py-cpuinfo",
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{file = "blosc2-2.7.0-cp312-cp312-win_amd64.whl", hash = "sha256:62d2a6eaf1be1858993a4d7b2b8efd2ede5c4eaabe030c611cd075d907aa5400"},
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{file = "blosc2-2.7.0.tar.gz", hash = "sha256:9b982c1d40560eefb4a01d67c57e786d39a5ee9696f3deadd32ebf5f8885eb2a"},
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[[package]]
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name = "cattrs"
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version = "23.2.3"
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@ -152,13 +114,13 @@ files = [
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[[package]]
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name = "certifi"
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version = "2024.6.2"
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version = "2024.7.4"
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requires_python = ">=3.6"
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summary = "Python package for providing Mozilla's CA Bundle."
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groups = ["default", "dev", "tests"]
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files = [
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{file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"},
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{file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"},
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{file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"},
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[[package]]
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@ -359,7 +321,7 @@ files = [
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[[package]]
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name = "curies"
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version = "0.7.9"
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version = "0.7.10"
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requires_python = ">=3.8"
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summary = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
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groups = ["default", "dev", "tests"]
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@ -369,8 +331,8 @@ dependencies = [
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"requests",
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]
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files = [
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{file = "curies-0.7.9-py3-none-any.whl", hash = "sha256:e4c5beb91642376953c94db0ee2fb5d2b011c3b16749516436114ba61442f260"},
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[[package]]
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@ -443,7 +405,7 @@ files = [
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[[package]]
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name = "dask"
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version = "2024.6.2"
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version = "2024.7.0"
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requires_python = ">=3.9"
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summary = "Parallel PyData with Task Scheduling"
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groups = ["default", "dev", "tests"]
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@ -453,13 +415,13 @@ dependencies = [
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"fsspec>=2021.09.0",
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"importlib-metadata>=4.13.0; python_version < \"3.12\"",
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"packaging>=20.0",
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"partd>=1.2.0",
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"partd>=1.4.0",
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"pyyaml>=5.3.1",
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"toolz>=0.10.0",
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]
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files = [
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{file = "dask-2024.6.2-py3-none-any.whl", hash = "sha256:81b80ee015b2e057b93bb2d1bf13a866136e762e2b24bf54b6b621e8b86b7708"},
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{file = "dask-2024.6.2.tar.gz", hash = "sha256:d429d6b19e85fd1306ac37c188aaf99d03bbe69a6fe59d2b42882b2ac188686f"},
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[[package]]
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@ -498,14 +460,14 @@ files = [
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[[package]]
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name = "exceptiongroup"
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version = "1.2.1"
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version = "1.2.2"
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requires_python = ">=3.7"
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summary = "Backport of PEP 654 (exception groups)"
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groups = ["default", "dev", "tests"]
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marker = "python_version < \"3.11\""
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files = [
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{file = "exceptiongroup-1.2.1-py3-none-any.whl", hash = "sha256:5258b9ed329c5bbdd31a309f53cbfb0b155341807f6ff7606a1e801a891b29ad"},
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[[package]]
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@ -822,7 +784,7 @@ files = [
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[[package]]
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name = "jsonschema"
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version = "4.22.0"
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version = "4.23.0"
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requires_python = ">=3.8"
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summary = "An implementation of JSON Schema validation for Python"
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groups = ["default", "dev", "tests"]
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@ -833,8 +795,8 @@ dependencies = [
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"rpds-py>=0.7.1",
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]
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files = [
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{file = "jsonschema-4.22.0-py3-none-any.whl", hash = "sha256:ff4cfd6b1367a40e7bc6411caec72effadd3db0bbe5017de188f2d6108335802"},
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{file = "jsonschema-4.22.0.tar.gz", hash = "sha256:5b22d434a45935119af990552c862e5d6d564e8f6601206b305a61fdf661a2b7"},
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{file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"},
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[[package]]
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@ -853,7 +815,7 @@ files = [
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[[package]]
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name = "jsonschema"
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version = "4.22.0"
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version = "4.23.0"
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extras = ["format"]
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requires_python = ">=3.8"
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summary = "An implementation of JSON Schema validation for Python"
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@ -863,37 +825,37 @@ dependencies = [
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"idna",
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"isoduration",
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"jsonpointer>1.13",
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"jsonschema==4.22.0",
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"jsonschema==4.23.0",
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"rfc3339-validator",
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"rfc3987",
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"uri-template",
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"webcolors>=1.11",
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]
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files = [
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{file = "jsonschema-4.22.0-py3-none-any.whl", hash = "sha256:ff4cfd6b1367a40e7bc6411caec72effadd3db0bbe5017de188f2d6108335802"},
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{file = "jsonschema-4.22.0.tar.gz", hash = "sha256:5b22d434a45935119af990552c862e5d6d564e8f6601206b305a61fdf661a2b7"},
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]
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[[package]]
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name = "linkml"
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version = "0.0.0"
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requires_python = ">=3.8.1,<4.0.0"
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requires_python = "<4.0.0,>=3.8.1"
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git = "https://github.com/sneakers-the-rat/linkml"
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ref = "arrays-numpydantic"
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revision = "a3cfb2b82d7519cf9c64d113250c1714db2b3f6e"
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ref = "nwb-linkml"
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revision = "bf67a752618b0abdce8a802cce0da4e273b3a079"
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summary = "Linked Open Data Modeling Language"
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groups = ["default", "dev", "tests"]
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dependencies = [
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"antlr4-python3-runtime<4.10,>=4.9.0",
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"antlr4-python3-runtime<4.10,==4.*,>=4.9.0",
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"click>=7.0",
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"graphviz>=0.10.1",
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"hbreader",
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"isodate>=0.6.0",
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"jinja2>=3.1.0",
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"jsonasobj2<2.dev0,>=1.0.3",
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"jsonasobj2==1.*,>=1.0.0,>=1.0.3",
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"jsonschema[format]>=4.0.0",
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"linkml-dataops",
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"linkml-runtime>=1.7.4",
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"linkml-runtime==1.8.0",
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"openpyxl",
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"parse",
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"prefixcommons>=0.1.7",
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@ -930,7 +892,7 @@ files = [
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[[package]]
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name = "linkml-runtime"
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version = "1.7.7"
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version = "1.8.0"
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requires_python = "<4.0,>=3.8"
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summary = "Runtime environment for LinkML, the Linked open data modeling language"
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groups = ["default", "dev", "tests"]
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@ -950,8 +912,8 @@ dependencies = [
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"requests",
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]
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files = [
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{file = "linkml_runtime-1.7.7-py3-none-any.whl", hash = "sha256:1556db30cda1191de2f70c3b949eb45c31b2ed66ca525bf38ee99f992f2451d7"},
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{file = "linkml_runtime-1.7.7.tar.gz", hash = "sha256:f471b765056b38ff3eb1372d167b86a67e188ef472c16abf4f6cd91097a82a11"},
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{file = "linkml_runtime-1.8.0-py3-none-any.whl", hash = "sha256:e99a809eda52640633f07a9e8b391d1a9da863eb68a475dfd74a79335b909931"},
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{file = "linkml_runtime-1.8.0.tar.gz", hash = "sha256:436381a7bf791e9af4ef0a5adcac86762d451b77670fbdb3ba083d2c177fb5f2"},
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]
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[[package]]
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@ -1030,49 +992,6 @@ files = [
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{file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
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]
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[[package]]
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name = "msgpack"
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version = "1.0.8"
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requires_python = ">=3.8"
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summary = "MessagePack serializer"
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groups = ["default", "dev", "tests"]
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files = [
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[[package]]
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|
@ -1866,84 +1730,84 @@ files = [
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|||
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[[package]]
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name = "rpds-py"
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version = "0.18.1"
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version = "0.19.0"
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requires_python = ">=3.8"
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summary = "Python bindings to Rust's persistent data structures (rpds)"
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groups = ["default", "dev", "tests"]
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[[package]]
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@ -1997,40 +1861,40 @@ files = [
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[[package]]
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{file = "ruff-0.5.0-py3-none-win_arm64.whl", hash = "sha256:ed5c4df5c1fb4518abcb57725b576659542bdbe93366f4f329e8f398c4b71178"},
|
||||
{file = "ruff-0.5.0.tar.gz", hash = "sha256:eb641b5873492cf9bd45bc9c5ae5320648218e04386a5f0c264ad6ccce8226a1"},
|
||||
{file = "ruff-0.5.2-py3-none-linux_armv6l.whl", hash = "sha256:7bab8345df60f9368d5f4594bfb8b71157496b44c30ff035d1d01972e764d3be"},
|
||||
{file = "ruff-0.5.2-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:1aa7acad382ada0189dbe76095cf0a36cd0036779607c397ffdea16517f535b1"},
|
||||
{file = "ruff-0.5.2-py3-none-macosx_11_0_arm64.whl", hash = "sha256:aec618d5a0cdba5592c60c2dee7d9c865180627f1a4a691257dea14ac1aa264d"},
|
||||
{file = "ruff-0.5.2-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a0b62adc5ce81780ff04077e88bac0986363e4a3260ad3ef11ae9c14aa0e67ef"},
|
||||
{file = "ruff-0.5.2-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:dc42ebf56ede83cb080a50eba35a06e636775649a1ffd03dc986533f878702a3"},
|
||||
{file = "ruff-0.5.2-py3-none-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:c15c6e9f88c67ffa442681365d11df38afb11059fc44238e71a9d9f1fd51de70"},
|
||||
{file = "ruff-0.5.2-py3-none-manylinux_2_17_ppc64.manylinux2014_ppc64.whl", hash = "sha256:d3de9a5960f72c335ef00763d861fc5005ef0644cb260ba1b5a115a102157251"},
|
||||
{file = "ruff-0.5.2-py3-none-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:fe5a968ae933e8f7627a7b2fc8893336ac2be0eb0aace762d3421f6e8f7b7f83"},
|
||||
{file = "ruff-0.5.2-py3-none-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:a04f54a9018f75615ae52f36ea1c5515e356e5d5e214b22609ddb546baef7132"},
|
||||
{file = "ruff-0.5.2-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:1ed02fb52e3741f0738db5f93e10ae0fb5c71eb33a4f2ba87c9a2fa97462a649"},
|
||||
{file = "ruff-0.5.2-py3-none-musllinux_1_2_aarch64.whl", hash = "sha256:3cf8fe659f6362530435d97d738eb413e9f090e7e993f88711b0377fbdc99f60"},
|
||||
{file = "ruff-0.5.2-py3-none-musllinux_1_2_armv7l.whl", hash = "sha256:237a37e673e9f3cbfff0d2243e797c4862a44c93d2f52a52021c1a1b0899f846"},
|
||||
{file = "ruff-0.5.2-py3-none-musllinux_1_2_i686.whl", hash = "sha256:2a2949ce7c1cbd8317432ada80fe32156df825b2fd611688814c8557824ef060"},
|
||||
{file = "ruff-0.5.2-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:481af57c8e99da92ad168924fd82220266043c8255942a1cb87958b108ac9335"},
|
||||
{file = "ruff-0.5.2-py3-none-win32.whl", hash = "sha256:f1aea290c56d913e363066d83d3fc26848814a1fed3d72144ff9c930e8c7c718"},
|
||||
{file = "ruff-0.5.2-py3-none-win_amd64.whl", hash = "sha256:8532660b72b5d94d2a0a7a27ae7b9b40053662d00357bb2a6864dd7e38819084"},
|
||||
{file = "ruff-0.5.2-py3-none-win_arm64.whl", hash = "sha256:73439805c5cb68f364d826a5c5c4b6c798ded6b7ebaa4011f01ce6c94e4d5583"},
|
||||
{file = "ruff-0.5.2.tar.gz", hash = "sha256:2c0df2d2de685433794a14d8d2e240df619b748fbe3367346baa519d8e6f1ca2"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "setuptools"
|
||||
version = "70.3.0"
|
||||
version = "71.0.1"
|
||||
requires_python = ">=3.8"
|
||||
summary = "Easily download, build, install, upgrade, and uninstall Python packages"
|
||||
groups = ["dev", "tests"]
|
||||
files = [
|
||||
{file = "setuptools-70.3.0-py3-none-any.whl", hash = "sha256:fe384da74336c398e0d956d1cae0669bc02eed936cdb1d49b57de1990dc11ffc"},
|
||||
{file = "setuptools-70.3.0.tar.gz", hash = "sha256:f171bab1dfbc86b132997f26a119f6056a57950d058587841a0082e8830f9dc5"},
|
||||
{file = "setuptools-71.0.1-py3-none-any.whl", hash = "sha256:1eb8ef012efae7f6acbc53ec0abde4bc6746c43087fd215ee09e1df48998711f"},
|
||||
{file = "setuptools-71.0.1.tar.gz", hash = "sha256:c51d7fd29843aa18dad362d4b4ecd917022131425438251f4e3d766c964dd1ad"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
|
|
|
|||
|
|
@ -14,7 +14,7 @@ dependencies = [
|
|||
"nwb-schema-language>=0.1.3",
|
||||
"rich>=13.5.2",
|
||||
#"linkml>=1.7.10",
|
||||
"linkml @ git+https://github.com/sneakers-the-rat/linkml@arrays-numpydantic",
|
||||
"linkml @ git+https://github.com/sneakers-the-rat/linkml@nwb-linkml",
|
||||
"nptyping>=2.5.0",
|
||||
"pydantic>=2.3.0",
|
||||
"h5py>=3.9.0",
|
||||
|
|
|
|||
Loading…
Reference in a new issue