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--- a/pyproject.toml +++ b/pyproject.toml @@ -7,12 +7,15 @@ requires-python = "<3.13,>=3.10" dev = [ '-e nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml', '-e nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language', - '-e nwb-models @ file:///${PROJECT_ROOT/nwb_models', + '-e nwb-models @ file:///${PROJECT_ROOT}/nwb_models', '-e docs @ file:///${PROJECT_ROOT}/docs', "ruff>=0.5.0", "black>=24.4.2", ] +[tool.pdm.scripts] +build-models = "python scripts/generate_core.py" + [tool.codespell] # Ref: https://github.com/codespell-project/codespell#using-a-config-file skip = '.git*,*.lock,*.css,./nwb_models/src/nwb_models/models,./nwb_models/src/nwb_models/schema' diff --git a/scripts/generate_core.py b/scripts/generate_core.py index 1e03897..221aeaf 100644 --- a/scripts/generate_core.py +++ b/scripts/generate_core.py @@ -166,29 +166,17 @@ def generate_versions( pydantic_task = None if not dry_run: - if hdmf_only: - shutil.rmtree(yaml_path / "linkml" / "hdmf_common") - shutil.rmtree(yaml_path / "linkml" / "hdmf_experimental") - shutil.rmtree(pydantic_path / "pydantic" / "hdmf_common") - shutil.rmtree(pydantic_path / "pydantic" / "hdmf_experimental") - shutil.move(tmp_dir / "linkml" / "hdmf_common", yaml_path / "linkml") - shutil.move(tmp_dir / "linkml" / "hdmf_experimental", yaml_path / "linkml") - shutil.move(tmp_dir / "pydantic" / "hdmf_common", pydantic_path / "pydantic") - shutil.move(tmp_dir / "pydantic" / "hdmf_experimental", pydantic_path / "pydantic") - else: - shutil.rmtree(yaml_path / "linkml") - shutil.rmtree(pydantic_path / "pydantic") - shutil.move(tmp_dir / "linkml", yaml_path) - shutil.move(tmp_dir / "pydantic", pydantic_path) + shutil.copytree(tmp_dir / "linkml", yaml_path, dirs_exist_ok=True) + shutil.copytree(tmp_dir / "pydantic", pydantic_path, dirs_exist_ok=True) + shutil.rmtree(tmp_dir / "linkml") + shutil.rmtree(tmp_dir / "pydantic") # import the most recent version of the schemaz we built - latest_version = sorted( - (pydantic_path / "pydantic" / "core").glob("v*"), key=os.path.getmtime - )[-1] + latest_version = sorted((pydantic_path / "core").glob("v*"), key=os.path.getmtime)[-1] # make inits to use the schema! we don't usually do this in the # provider class because we directly import the files there. - with open(pydantic_path / "pydantic" / "__init__.py", "w") as initfile: + with open(pydantic_path / "__init__.py", "w") as initfile: initfile.write(" ") with open(pydantic_path / "__init__.py", "w") as initfile: @@ -208,13 +196,23 @@ def parser() -> ArgumentParser: "--yaml", help="directory to export linkML schema to", type=Path, - default=Path(__file__).parent.parent / "nwb_models" / "src" / "nwb_models" / "schema", + default=Path(__file__).parent.parent + / "nwb_models" + / "src" + / "nwb_models" + / "schema" + / "linkml", ) parser.add_argument( "--pydantic", help="directory to export pydantic models", type=Path, - default=Path(__file__).parent.parent / "nwb_models" / "src" / "nwb_models" / "models", + default=Path(__file__).parent.parent + / "nwb_models" + / "src" + / "nwb_models" + / "models" + / "pydantic", ) parser.add_argument("--hdmf", help="Only generate the HDMF namespaces", action="store_true") parser.add_argument(