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regenerate models

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sneakers-the-rat 2024-08-20 23:04:05 -07:00
parent 582ac5f09c
commit fe7e9f89ca
Signed by untrusted user who does not match committer: jonny
GPG key ID: 6DCB96EF1E4D232D
82 changed files with 1794 additions and 1955 deletions
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1
nwb_models/src/nwb_models/models/pydantic/core/__init__.py
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@ -0,0 +1 @@

142
nwb_models/src/nwb_models/models/pydantic/core/v2_2_0/namespace.py
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@ -7,39 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_0.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_0.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...core.v2_2_0.core_nwb_retinotopy import (
RetinotopyMap,
AxisMap,
RetinotopyImage,
ImagingRetinotopy,
ImagingRetinotopyFocalDepthImage,
)
from ...core.v2_2_0.core_nwb_image import (
GrayscaleImage,
RGBImage,
RGBAImage,
ImageSeries,
ImageSeriesExternalFile,
ImageMaskSeries,
OpticalSeries,
IndexSeries,
)
from ...core.v2_2_0.core_nwb_base import ( from ...core.v2_2_0.core_nwb_base import (
NWBData, NWBData,
Image, Image,
@ -52,21 +19,31 @@ from ...core.v2_2_0.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_2_0.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
)
from ...core.v2_2_0.core_nwb_device import Device from ...core.v2_2_0.core_nwb_device import Device
from ...core.v2_2_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_2_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
from ...core.v2_2_0.core_nwb_image import (
GrayscaleImage,
RGBImage,
RGBAImage,
ImageSeries,
ImageSeriesExternalFile,
ImageMaskSeries,
OpticalSeries,
IndexSeries,
)
from ...core.v2_2_0.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_2_0.core_nwb_icephys import ( from ...core.v2_2_0.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -89,29 +66,19 @@ from ...core.v2_2_0.core_nwb_icephys import (
IntracellularElectrode, IntracellularElectrode,
SweepTable, SweepTable,
) )
from ...core.v2_2_0.core_nwb_ecephys import ( from ...core.v2_2_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_2_0.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, ImagingPlane,
ElectrodeGroup, ImagingPlaneManifold,
ElectrodeGroupPosition, ImagingPlaneOriginCoords,
ClusterWaveforms, ImagingPlaneGridSpacing,
Clustering, OpticalChannel,
) MotionCorrection,
from ...core.v2_2_0.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_2_0.core_nwb_misc import ( from ...core.v2_2_0.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -135,7 +102,40 @@ from ...core.v2_2_0.core_nwb_file import (
GeneralIntracellularEphys, GeneralIntracellularEphys,
NWBFileIntervals, NWBFileIntervals,
) )
from ...core.v2_2_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries from ...core.v2_2_0.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_2_0.core_nwb_retinotopy import (
RetinotopyMap,
AxisMap,
RetinotopyImage,
ImagingRetinotopy,
ImagingRetinotopyFocalDepthImage,
)
from ...hdmf_common.v1_1_0.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...hdmf_common.v1_1_0.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.2.0" version = "2.2.0"

142
nwb_models/src/nwb_models/models/pydantic/core/v2_2_1/namespace.py
View file

@ -7,39 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_2.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_2.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...core.v2_2_1.core_nwb_retinotopy import (
RetinotopyMap,
AxisMap,
RetinotopyImage,
ImagingRetinotopy,
ImagingRetinotopyFocalDepthImage,
)
from ...core.v2_2_1.core_nwb_image import (
GrayscaleImage,
RGBImage,
RGBAImage,
ImageSeries,
ImageSeriesExternalFile,
ImageMaskSeries,
OpticalSeries,
IndexSeries,
)
from ...core.v2_2_1.core_nwb_base import ( from ...core.v2_2_1.core_nwb_base import (
NWBData, NWBData,
Image, Image,
@ -52,21 +19,31 @@ from ...core.v2_2_1.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_2_1.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
)
from ...core.v2_2_1.core_nwb_device import Device from ...core.v2_2_1.core_nwb_device import Device
from ...core.v2_2_1.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_2_1.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
from ...core.v2_2_1.core_nwb_image import (
GrayscaleImage,
RGBImage,
RGBAImage,
ImageSeries,
ImageSeriesExternalFile,
ImageMaskSeries,
OpticalSeries,
IndexSeries,
)
from ...core.v2_2_1.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_2_1.core_nwb_icephys import ( from ...core.v2_2_1.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -89,29 +66,19 @@ from ...core.v2_2_1.core_nwb_icephys import (
IntracellularElectrode, IntracellularElectrode,
SweepTable, SweepTable,
) )
from ...core.v2_2_1.core_nwb_ecephys import ( from ...core.v2_2_1.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_2_1.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, ImagingPlane,
ElectrodeGroup, ImagingPlaneManifold,
ElectrodeGroupPosition, ImagingPlaneOriginCoords,
ClusterWaveforms, ImagingPlaneGridSpacing,
Clustering, OpticalChannel,
) MotionCorrection,
from ...core.v2_2_1.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_2_1.core_nwb_misc import ( from ...core.v2_2_1.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -135,7 +102,40 @@ from ...core.v2_2_1.core_nwb_file import (
GeneralIntracellularEphys, GeneralIntracellularEphys,
NWBFileIntervals, NWBFileIntervals,
) )
from ...core.v2_2_1.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries from ...core.v2_2_1.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_2_1.core_nwb_retinotopy import (
RetinotopyMap,
AxisMap,
RetinotopyImage,
ImagingRetinotopy,
ImagingRetinotopyFocalDepthImage,
)
from ...hdmf_common.v1_1_2.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...hdmf_common.v1_1_2.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.2.1" version = "2.2.1"

128
nwb_models/src/nwb_models/models/pydantic/core/v2_2_2/namespace.py
View file

@ -7,32 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_3.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...core.v2_2_2.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_2_2.core_nwb_base import ( from ...core.v2_2_2.core_nwb_base import (
NWBData, NWBData,
Image, Image,
@ -45,20 +19,8 @@ from ...core.v2_2_2.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_2_2.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
)
from ...core.v2_2_2.core_nwb_device import Device from ...core.v2_2_2.core_nwb_device import Device
from ...core.v2_2_2.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
from ...core.v2_2_2.core_nwb_image import ( from ...core.v2_2_2.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -69,7 +31,19 @@ from ...core.v2_2_2.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_2_2.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_2_2.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_2_2.core_nwb_icephys import ( from ...core.v2_2_2.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -92,29 +66,19 @@ from ...core.v2_2_2.core_nwb_icephys import (
IntracellularElectrode, IntracellularElectrode,
SweepTable, SweepTable,
) )
from ...core.v2_2_2.core_nwb_ecephys import ( from ...core.v2_2_2.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_2_2.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, ImagingPlane,
ElectrodeGroup, ImagingPlaneManifold,
ElectrodeGroupPosition, ImagingPlaneOriginCoords,
ClusterWaveforms, ImagingPlaneGridSpacing,
Clustering, OpticalChannel,
) MotionCorrection,
from ...core.v2_2_2.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_2_2.core_nwb_misc import ( from ...core.v2_2_2.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -138,7 +102,43 @@ from ...core.v2_2_2.core_nwb_file import (
GeneralIntracellularEphys, GeneralIntracellularEphys,
NWBFileIntervals, NWBFileIntervals,
) )
from ...core.v2_2_2.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries from ...core.v2_2_2.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_2_2.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_common.v1_1_3.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.2.2" version = "2.2.2"

138
nwb_models/src/nwb_models/models/pydantic/core/v2_2_4/namespace.py
View file

@ -7,32 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_3.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...core.v2_2_4.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_2_4.core_nwb_base import ( from ...core.v2_2_4.core_nwb_base import (
NWBData, NWBData,
Image, Image,
@ -45,25 +19,8 @@ from ...core.v2_2_4.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_2_4.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
PlaneSegmentation,
PlaneSegmentationImageMask,
PlaneSegmentationPixelMask,
PlaneSegmentationVoxelMask,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
CorrectedImageStack,
)
from ...core.v2_2_4.core_nwb_device import Device from ...core.v2_2_4.core_nwb_device import Device
from ...core.v2_2_4.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
from ...core.v2_2_4.core_nwb_image import ( from ...core.v2_2_4.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -74,7 +31,19 @@ from ...core.v2_2_4.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_2_4.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_2_4.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_2_4.core_nwb_icephys import ( from ...core.v2_2_4.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -97,29 +66,24 @@ from ...core.v2_2_4.core_nwb_icephys import (
IntracellularElectrode, IntracellularElectrode,
SweepTable, SweepTable,
) )
from ...core.v2_2_4.core_nwb_ecephys import ( from ...core.v2_2_4.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_2_4.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, PlaneSegmentation,
ElectrodeGroup, PlaneSegmentationImageMask,
ElectrodeGroupPosition, PlaneSegmentationPixelMask,
ClusterWaveforms, PlaneSegmentationVoxelMask,
Clustering, ImagingPlane,
) ImagingPlaneManifold,
from ...core.v2_2_4.core_nwb_behavior import ( ImagingPlaneOriginCoords,
SpatialSeries, ImagingPlaneGridSpacing,
SpatialSeriesData, OpticalChannel,
BehavioralEpochs, MotionCorrection,
BehavioralEvents, CorrectedImageStack,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_2_4.core_nwb_misc import ( from ...core.v2_2_4.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -145,7 +109,43 @@ from ...core.v2_2_4.core_nwb_file import (
LabMetaData, LabMetaData,
Subject, Subject,
) )
from ...core.v2_2_4.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries from ...core.v2_2_4.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_2_4.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_common.v1_1_3.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.2.4" version = "2.2.4"

138
nwb_models/src/nwb_models/models/pydantic/core/v2_2_5/namespace.py
View file

@ -7,32 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_3.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...core.v2_2_5.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_2_5.core_nwb_base import ( from ...core.v2_2_5.core_nwb_base import (
NWBData, NWBData,
Image, Image,
@ -45,25 +19,8 @@ from ...core.v2_2_5.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_2_5.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
PlaneSegmentation,
PlaneSegmentationImageMask,
PlaneSegmentationPixelMask,
PlaneSegmentationVoxelMask,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
CorrectedImageStack,
)
from ...core.v2_2_5.core_nwb_device import Device from ...core.v2_2_5.core_nwb_device import Device
from ...core.v2_2_5.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
from ...core.v2_2_5.core_nwb_image import ( from ...core.v2_2_5.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -74,7 +31,19 @@ from ...core.v2_2_5.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_2_5.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_2_5.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_2_5.core_nwb_icephys import ( from ...core.v2_2_5.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -97,29 +66,24 @@ from ...core.v2_2_5.core_nwb_icephys import (
IntracellularElectrode, IntracellularElectrode,
SweepTable, SweepTable,
) )
from ...core.v2_2_5.core_nwb_ecephys import ( from ...core.v2_2_5.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_2_5.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, PlaneSegmentation,
ElectrodeGroup, PlaneSegmentationImageMask,
ElectrodeGroupPosition, PlaneSegmentationPixelMask,
ClusterWaveforms, PlaneSegmentationVoxelMask,
Clustering, ImagingPlane,
) ImagingPlaneManifold,
from ...core.v2_2_5.core_nwb_behavior import ( ImagingPlaneOriginCoords,
SpatialSeries, ImagingPlaneGridSpacing,
SpatialSeriesData, OpticalChannel,
BehavioralEpochs, MotionCorrection,
BehavioralEvents, CorrectedImageStack,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_2_5.core_nwb_misc import ( from ...core.v2_2_5.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -145,7 +109,43 @@ from ...core.v2_2_5.core_nwb_file import (
LabMetaData, LabMetaData,
Subject, Subject,
) )
from ...core.v2_2_5.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries from ...core.v2_2_5.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_2_5.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_common.v1_1_3.hdmf_common_table import (
Data,
Index,
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
Container,
DynamicTable,
)
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.2.5" version = "2.2.5"

144
nwb_models/src/nwb_models/models/pydantic/core/v2_3_0/namespace.py
View file

@ -7,35 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...core.v2_3_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_3_0.core_nwb_base import ( from ...core.v2_3_0.core_nwb_base import (
NWBData, NWBData,
Image, Image,
@ -48,25 +19,8 @@ from ...core.v2_3_0.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_3_0.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
PlaneSegmentation,
PlaneSegmentationImageMask,
PlaneSegmentationPixelMask,
PlaneSegmentationVoxelMask,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
CorrectedImageStack,
)
from ...core.v2_3_0.core_nwb_device import Device from ...core.v2_3_0.core_nwb_device import Device
from ...core.v2_3_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
from ...core.v2_3_0.core_nwb_image import ( from ...core.v2_3_0.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -77,7 +31,19 @@ from ...core.v2_3_0.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_3_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_3_0.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_3_0.core_nwb_icephys import ( from ...core.v2_3_0.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -100,29 +66,24 @@ from ...core.v2_3_0.core_nwb_icephys import (
IntracellularElectrode, IntracellularElectrode,
SweepTable, SweepTable,
) )
from ...core.v2_3_0.core_nwb_ecephys import ( from ...core.v2_3_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_3_0.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, PlaneSegmentation,
ElectrodeGroup, PlaneSegmentationImageMask,
ElectrodeGroupPosition, PlaneSegmentationPixelMask,
ClusterWaveforms, PlaneSegmentationVoxelMask,
Clustering, ImagingPlane,
) ImagingPlaneManifold,
from ...core.v2_3_0.core_nwb_behavior import ( ImagingPlaneOriginCoords,
SpatialSeries, ImagingPlaneGridSpacing,
SpatialSeriesData, OpticalChannel,
BehavioralEpochs, MotionCorrection,
BehavioralEvents, CorrectedImageStack,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_3_0.core_nwb_misc import ( from ...core.v2_3_0.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -148,7 +109,46 @@ from ...core.v2_3_0.core_nwb_file import (
LabMetaData, LabMetaData,
Subject, Subject,
) )
from ...core.v2_3_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries from ...core.v2_3_0.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_3_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.3.0" version = "2.3.0"

144
nwb_models/src/nwb_models/models/pydantic/core/v2_4_0/namespace.py
View file

@ -7,35 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...core.v2_4_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_4_0.core_nwb_base import ( from ...core.v2_4_0.core_nwb_base import (
NWBData, NWBData,
TimeSeriesReferenceVectorData, TimeSeriesReferenceVectorData,
@ -49,25 +20,8 @@ from ...core.v2_4_0.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_4_0.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
PlaneSegmentation,
PlaneSegmentationImageMask,
PlaneSegmentationPixelMask,
PlaneSegmentationVoxelMask,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
CorrectedImageStack,
)
from ...core.v2_4_0.core_nwb_device import Device from ...core.v2_4_0.core_nwb_device import Device
from ...core.v2_4_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries
from ...core.v2_4_0.core_nwb_image import ( from ...core.v2_4_0.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -78,7 +32,19 @@ from ...core.v2_4_0.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_4_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_4_0.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_4_0.core_nwb_icephys import ( from ...core.v2_4_0.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -113,29 +79,24 @@ from ...core.v2_4_0.core_nwb_icephys import (
ExperimentalConditionsTable, ExperimentalConditionsTable,
ExperimentalConditionsTableRepetitions, ExperimentalConditionsTableRepetitions,
) )
from ...core.v2_4_0.core_nwb_ecephys import ( from ...core.v2_4_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_4_0.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, PlaneSegmentation,
ElectrodeGroup, PlaneSegmentationImageMask,
ElectrodeGroupPosition, PlaneSegmentationPixelMask,
ClusterWaveforms, PlaneSegmentationVoxelMask,
Clustering, ImagingPlane,
) ImagingPlaneManifold,
from ...core.v2_4_0.core_nwb_behavior import ( ImagingPlaneOriginCoords,
SpatialSeries, ImagingPlaneGridSpacing,
SpatialSeriesData, OpticalChannel,
BehavioralEpochs, MotionCorrection,
BehavioralEvents, CorrectedImageStack,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_4_0.core_nwb_misc import ( from ...core.v2_4_0.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -161,7 +122,46 @@ from ...core.v2_4_0.core_nwb_file import (
LabMetaData, LabMetaData,
Subject, Subject,
) )
from ...core.v2_4_0.core_nwb_epoch import TimeIntervals, TimeIntervalsTimeseries from ...core.v2_4_0.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_4_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.4.0" version = "2.4.0"

144
nwb_models/src/nwb_models/models/pydantic/core/v2_5_0/namespace.py
View file

@ -7,35 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...core.v2_5_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_5_0.core_nwb_base import ( from ...core.v2_5_0.core_nwb_base import (
NWBData, NWBData,
TimeSeriesReferenceVectorData, TimeSeriesReferenceVectorData,
@ -50,25 +21,8 @@ from ...core.v2_5_0.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_5_0.core_nwb_ophys import (
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
PlaneSegmentation,
PlaneSegmentationImageMask,
PlaneSegmentationPixelMask,
PlaneSegmentationVoxelMask,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
CorrectedImageStack,
)
from ...core.v2_5_0.core_nwb_device import Device from ...core.v2_5_0.core_nwb_device import Device
from ...core.v2_5_0.core_nwb_epoch import TimeIntervals
from ...core.v2_5_0.core_nwb_image import ( from ...core.v2_5_0.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -79,7 +33,19 @@ from ...core.v2_5_0.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_5_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_5_0.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_5_0.core_nwb_icephys import ( from ...core.v2_5_0.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -114,29 +80,24 @@ from ...core.v2_5_0.core_nwb_icephys import (
ExperimentalConditionsTable, ExperimentalConditionsTable,
ExperimentalConditionsTableRepetitions, ExperimentalConditionsTableRepetitions,
) )
from ...core.v2_5_0.core_nwb_ecephys import ( from ...core.v2_5_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_5_0.core_nwb_ophys import (
SpikeEventSeries, TwoPhotonSeries,
FeatureExtraction, RoiResponseSeries,
EventDetection, DfOverF,
EventWaveform, Fluorescence,
FilteredEphys, ImageSegmentation,
LFP, PlaneSegmentation,
ElectrodeGroup, PlaneSegmentationImageMask,
ElectrodeGroupPosition, PlaneSegmentationPixelMask,
ClusterWaveforms, PlaneSegmentationVoxelMask,
Clustering, ImagingPlane,
) ImagingPlaneManifold,
from ...core.v2_5_0.core_nwb_behavior import ( ImagingPlaneOriginCoords,
SpatialSeries, ImagingPlaneGridSpacing,
SpatialSeriesData, OpticalChannel,
BehavioralEpochs, MotionCorrection,
BehavioralEvents, CorrectedImageStack,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_5_0.core_nwb_misc import ( from ...core.v2_5_0.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -162,7 +123,46 @@ from ...core.v2_5_0.core_nwb_file import (
LabMetaData, LabMetaData,
Subject, Subject,
) )
from ...core.v2_5_0.core_nwb_epoch import TimeIntervals from ...core.v2_5_0.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_5_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.5.0" version = "2.5.0"

146
nwb_models/src/nwb_models/models/pydantic/core/v2_6_0_alpha/namespace.py
View file

@ -7,35 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...core.v2_6_0_alpha.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_6_0_alpha.core_nwb_base import ( from ...core.v2_6_0_alpha.core_nwb_base import (
NWBData, NWBData,
TimeSeriesReferenceVectorData, TimeSeriesReferenceVectorData,
@ -50,26 +21,8 @@ from ...core.v2_6_0_alpha.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_6_0_alpha.core_nwb_ophys import (
OnePhotonSeries,
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
PlaneSegmentation,
PlaneSegmentationImageMask,
PlaneSegmentationPixelMask,
PlaneSegmentationVoxelMask,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
CorrectedImageStack,
)
from ...core.v2_6_0_alpha.core_nwb_device import Device from ...core.v2_6_0_alpha.core_nwb_device import Device
from ...core.v2_6_0_alpha.core_nwb_epoch import TimeIntervals
from ...core.v2_6_0_alpha.core_nwb_image import ( from ...core.v2_6_0_alpha.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -80,7 +33,19 @@ from ...core.v2_6_0_alpha.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_6_0_alpha.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_6_0_alpha.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_6_0_alpha.core_nwb_icephys import ( from ...core.v2_6_0_alpha.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -115,29 +80,25 @@ from ...core.v2_6_0_alpha.core_nwb_icephys import (
ExperimentalConditionsTable, ExperimentalConditionsTable,
ExperimentalConditionsTableRepetitions, ExperimentalConditionsTableRepetitions,
) )
from ...core.v2_6_0_alpha.core_nwb_ecephys import ( from ...core.v2_6_0_alpha.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_6_0_alpha.core_nwb_ophys import (
SpikeEventSeries, OnePhotonSeries,
FeatureExtraction, TwoPhotonSeries,
EventDetection, RoiResponseSeries,
EventWaveform, DfOverF,
FilteredEphys, Fluorescence,
LFP, ImageSegmentation,
ElectrodeGroup, PlaneSegmentation,
ElectrodeGroupPosition, PlaneSegmentationImageMask,
ClusterWaveforms, PlaneSegmentationPixelMask,
Clustering, PlaneSegmentationVoxelMask,
) ImagingPlane,
from ...core.v2_6_0_alpha.core_nwb_behavior import ( ImagingPlaneManifold,
SpatialSeries, ImagingPlaneOriginCoords,
SpatialSeriesData, ImagingPlaneGridSpacing,
BehavioralEpochs, OpticalChannel,
BehavioralEvents, MotionCorrection,
BehavioralTimeSeries, CorrectedImageStack,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_6_0_alpha.core_nwb_misc import ( from ...core.v2_6_0_alpha.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -164,7 +125,46 @@ from ...core.v2_6_0_alpha.core_nwb_file import (
Subject, Subject,
SubjectAge, SubjectAge,
) )
from ...core.v2_6_0_alpha.core_nwb_epoch import TimeIntervals from ...core.v2_6_0_alpha.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_6_0_alpha.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.6.0-alpha" version = "2.6.0-alpha"

148
nwb_models/src/nwb_models/models/pydantic/core/v2_7_0/namespace.py
View file

@ -7,36 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_5_0.hdmf_experimental_resources import (
HERD,
HERDKeys,
HERDFiles,
HERDEntities,
HERDObjects,
HERDObjectKeys,
HERDEntityKeys,
)
from ...hdmf_common.v1_8_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_8_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_8_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_experimental.v0_5_0.hdmf_experimental_experimental import EnumData
from ...core.v2_7_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...core.v2_7_0.core_nwb_base import ( from ...core.v2_7_0.core_nwb_base import (
NWBData, NWBData,
TimeSeriesReferenceVectorData, TimeSeriesReferenceVectorData,
@ -51,26 +21,8 @@ from ...core.v2_7_0.core_nwb_base import (
ProcessingModule, ProcessingModule,
Images, Images,
) )
from ...core.v2_7_0.core_nwb_ophys import (
OnePhotonSeries,
TwoPhotonSeries,
RoiResponseSeries,
DfOverF,
Fluorescence,
ImageSegmentation,
PlaneSegmentation,
PlaneSegmentationImageMask,
PlaneSegmentationPixelMask,
PlaneSegmentationVoxelMask,
ImagingPlane,
ImagingPlaneManifold,
ImagingPlaneOriginCoords,
ImagingPlaneGridSpacing,
OpticalChannel,
MotionCorrection,
CorrectedImageStack,
)
from ...core.v2_7_0.core_nwb_device import Device from ...core.v2_7_0.core_nwb_device import Device
from ...core.v2_7_0.core_nwb_epoch import TimeIntervals
from ...core.v2_7_0.core_nwb_image import ( from ...core.v2_7_0.core_nwb_image import (
GrayscaleImage, GrayscaleImage,
RGBImage, RGBImage,
@ -81,7 +33,19 @@ from ...core.v2_7_0.core_nwb_image import (
OpticalSeries, OpticalSeries,
IndexSeries, IndexSeries,
) )
from ...core.v2_7_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite from ...core.v2_7_0.core_nwb_ecephys import (
ElectricalSeries,
SpikeEventSeries,
FeatureExtraction,
EventDetection,
EventWaveform,
FilteredEphys,
LFP,
ElectrodeGroup,
ElectrodeGroupPosition,
ClusterWaveforms,
Clustering,
)
from ...core.v2_7_0.core_nwb_icephys import ( from ...core.v2_7_0.core_nwb_icephys import (
PatchClampSeries, PatchClampSeries,
PatchClampSeriesData, PatchClampSeriesData,
@ -116,29 +80,25 @@ from ...core.v2_7_0.core_nwb_icephys import (
ExperimentalConditionsTable, ExperimentalConditionsTable,
ExperimentalConditionsTableRepetitions, ExperimentalConditionsTableRepetitions,
) )
from ...core.v2_7_0.core_nwb_ecephys import ( from ...core.v2_7_0.core_nwb_ogen import OptogeneticSeries, OptogeneticStimulusSite
ElectricalSeries, from ...core.v2_7_0.core_nwb_ophys import (
SpikeEventSeries, OnePhotonSeries,
FeatureExtraction, TwoPhotonSeries,
EventDetection, RoiResponseSeries,
EventWaveform, DfOverF,
FilteredEphys, Fluorescence,
LFP, ImageSegmentation,
ElectrodeGroup, PlaneSegmentation,
ElectrodeGroupPosition, PlaneSegmentationImageMask,
ClusterWaveforms, PlaneSegmentationPixelMask,
Clustering, PlaneSegmentationVoxelMask,
) ImagingPlane,
from ...core.v2_7_0.core_nwb_behavior import ( ImagingPlaneManifold,
SpatialSeries, ImagingPlaneOriginCoords,
SpatialSeriesData, ImagingPlaneGridSpacing,
BehavioralEpochs, OpticalChannel,
BehavioralEvents, MotionCorrection,
BehavioralTimeSeries, CorrectedImageStack,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
) )
from ...core.v2_7_0.core_nwb_misc import ( from ...core.v2_7_0.core_nwb_misc import (
AbstractFeatureSeries, AbstractFeatureSeries,
@ -165,7 +125,47 @@ from ...core.v2_7_0.core_nwb_file import (
Subject, Subject,
SubjectAge, SubjectAge,
) )
from ...core.v2_7_0.core_nwb_epoch import TimeIntervals from ...core.v2_7_0.core_nwb_behavior import (
SpatialSeries,
SpatialSeriesData,
BehavioralEpochs,
BehavioralEvents,
BehavioralTimeSeries,
PupilTracking,
EyeTracking,
CompassDirection,
Position,
)
from ...core.v2_7_0.core_nwb_retinotopy import (
ImagingRetinotopy,
ImagingRetinotopyAxis1PhaseMap,
ImagingRetinotopyAxis1PowerMap,
ImagingRetinotopyAxis2PhaseMap,
ImagingRetinotopyAxis2PowerMap,
ImagingRetinotopyFocalDepthImage,
ImagingRetinotopySignMap,
ImagingRetinotopyVasculatureImage,
)
from ...hdmf_experimental.v0_5_0.hdmf_experimental_experimental import EnumData
from ...hdmf_common.v1_8_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_8_0.hdmf_common_table import (
VectorData,
VectorIndex,
ElementIdentifiers,
DynamicTableRegion,
DynamicTable,
AlignedDynamicTable,
)
from ...hdmf_common.v1_8_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_5_0.hdmf_experimental_resources import (
HERD,
HERDKeys,
HERDFiles,
HERDEntities,
HERDObjects,
HERDObjectKeys,
HERDEntityKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "2.7.0" version = "2.7.0"

12
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_1_0/namespace.py
View file

@ -7,12 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_0.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_0.hdmf_common_table import ( from ...hdmf_common.v1_1_0.hdmf_common_table import (
Data, Data,
Index, Index,
@ -23,6 +17,12 @@ from ...hdmf_common.v1_1_0.hdmf_common_table import (
Container, Container,
DynamicTable, DynamicTable,
) )
from ...hdmf_common.v1_1_0.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "1.1.0" version = "1.1.0"

12
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_1_2/namespace.py
View file

@ -7,12 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_2.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_2.hdmf_common_table import ( from ...hdmf_common.v1_1_2.hdmf_common_table import (
Data, Data,
Index, Index,
@ -23,6 +17,12 @@ from ...hdmf_common.v1_1_2.hdmf_common_table import (
Container, Container,
DynamicTable, DynamicTable,
) )
from ...hdmf_common.v1_1_2.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "1.1.2" version = "1.1.2"

12
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_1_3/namespace.py
View file

@ -7,12 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_1_3.hdmf_common_table import ( from ...hdmf_common.v1_1_3.hdmf_common_table import (
Data, Data,
Index, Index,
@ -23,6 +17,12 @@ from ...hdmf_common.v1_1_3.hdmf_common_table import (
Container, Container,
DynamicTable, DynamicTable,
) )
from ...hdmf_common.v1_1_3.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "1.1.3" version = "1.1.3"

14
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_2_0/namespace.py
View file

@ -7,12 +7,7 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_2_0.hdmf_common_sparse import ( from ...hdmf_common.v1_2_0.hdmf_common_base import Data, Container
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_2_0.hdmf_common_table import ( from ...hdmf_common.v1_2_0.hdmf_common_table import (
VectorData, VectorData,
VectorIndex, VectorIndex,
@ -21,7 +16,12 @@ from ...hdmf_common.v1_2_0.hdmf_common_table import (
VocabData, VocabData,
DynamicTable, DynamicTable,
) )
from ...hdmf_common.v1_2_0.hdmf_common_base import Data, Container from ...hdmf_common.v1_2_0.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "1.2.0" version = "1.2.0"

12
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_2_1/namespace.py
View file

@ -7,12 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_2_1.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
from ...hdmf_common.v1_2_1.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_2_1.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_2_1.hdmf_common_table import ( from ...hdmf_common.v1_2_1.hdmf_common_table import (
VectorData, VectorData,
@ -22,6 +16,12 @@ from ...hdmf_common.v1_2_1.hdmf_common_table import (
VocabData, VocabData,
DynamicTable, DynamicTable,
) )
from ...hdmf_common.v1_2_1.hdmf_common_sparse import (
CSRMatrix,
CSRMatrixIndices,
CSRMatrixIndptr,
CSRMatrixData,
)
metamodel_version = "None" metamodel_version = "None"
version = "1.2.1" version = "1.2.1"

16
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_3_0/namespace.py
View file

@ -7,15 +7,7 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_3_0.hdmf_common_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_3_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_3_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_3_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_3_0.hdmf_common_table import ( from ...hdmf_common.v1_3_0.hdmf_common_table import (
VectorData, VectorData,
VectorIndex, VectorIndex,
@ -24,6 +16,14 @@ from ...hdmf_common.v1_3_0.hdmf_common_table import (
VocabData, VocabData,
DynamicTable, DynamicTable,
) )
from ...hdmf_common.v1_3_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_3_0.hdmf_common_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "1.3.0" version = "1.3.0"

2
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_4_0/namespace.py
View file

@ -7,7 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_4_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_4_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_4_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_4_0.hdmf_common_table import ( from ...hdmf_common.v1_4_0.hdmf_common_table import (
VectorData, VectorData,
@ -16,6 +15,7 @@ from ...hdmf_common.v1_4_0.hdmf_common_table import (
DynamicTableRegion, DynamicTableRegion,
DynamicTable, DynamicTable,
) )
from ...hdmf_common.v1_4_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
metamodel_version = "None" metamodel_version = "None"
version = "1.4.0" version = "1.4.0"

2
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_5_0/namespace.py
View file

@ -7,7 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_5_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_0.hdmf_common_table import ( from ...hdmf_common.v1_5_0.hdmf_common_table import (
VectorData, VectorData,
@ -17,6 +16,7 @@ from ...hdmf_common.v1_5_0.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_common.v1_5_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
metamodel_version = "None" metamodel_version = "None"
version = "1.5.0" version = "1.5.0"

2
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_5_1/namespace.py
View file

@ -7,7 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_5_1.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_5_1.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_5_1.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_1.hdmf_common_table import ( from ...hdmf_common.v1_5_1.hdmf_common_table import (
VectorData, VectorData,
@ -17,6 +16,7 @@ from ...hdmf_common.v1_5_1.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_common.v1_5_1.hdmf_common_sparse import CSRMatrix, CSRMatrixData
metamodel_version = "None" metamodel_version = "None"
version = "1.5.1" version = "1.5.1"

2
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_6_0/namespace.py
View file

@ -7,7 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_6_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_6_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_6_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_6_0.hdmf_common_table import ( from ...hdmf_common.v1_6_0.hdmf_common_table import (
VectorData, VectorData,
@ -17,6 +16,7 @@ from ...hdmf_common.v1_6_0.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_common.v1_6_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
metamodel_version = "None" metamodel_version = "None"
version = "1.6.0" version = "1.6.0"

2
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_7_0/namespace.py
View file

@ -7,7 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_7_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_7_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_7_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_7_0.hdmf_common_table import ( from ...hdmf_common.v1_7_0.hdmf_common_table import (
VectorData, VectorData,
@ -17,6 +16,7 @@ from ...hdmf_common.v1_7_0.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_common.v1_7_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
metamodel_version = "None" metamodel_version = "None"
version = "1.7.0" version = "1.7.0"

2
nwb_models/src/nwb_models/models/pydantic/hdmf_common/v1_8_0/namespace.py
View file

@ -7,7 +7,6 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_common.v1_8_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_8_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_8_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_8_0.hdmf_common_table import ( from ...hdmf_common.v1_8_0.hdmf_common_table import (
VectorData, VectorData,
@ -17,6 +16,7 @@ from ...hdmf_common.v1_8_0.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_common.v1_8_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
metamodel_version = "None" metamodel_version = "None"
version = "1.8.0" version = "1.8.0"

1
nwb_models/src/nwb_models/models/pydantic/hdmf_experimental/__init__.py
View file

@ -0,0 +1 @@

20
nwb_models/src/nwb_models/models/pydantic/hdmf_experimental/v0_1_0/namespace.py
View file

@ -7,15 +7,7 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import ( from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_4_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_4_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_4_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_4_0.hdmf_common_table import ( from ...hdmf_common.v1_4_0.hdmf_common_table import (
VectorData, VectorData,
@ -24,7 +16,15 @@ from ...hdmf_common.v1_4_0.hdmf_common_table import (
DynamicTableRegion, DynamicTableRegion,
DynamicTable, DynamicTable,
) )
from ...hdmf_experimental.v0_1_0.hdmf_experimental_experimental import EnumData from ...hdmf_common.v1_4_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_1_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "0.1.0" version = "0.1.0"

20
nwb_models/src/nwb_models/models/pydantic/hdmf_experimental/v0_2_0/namespace.py
View file

@ -7,15 +7,7 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_2_0.hdmf_experimental_resources import ( from ...hdmf_experimental.v0_2_0.hdmf_experimental_experimental import EnumData
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_5_1.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_5_1.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_5_1.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_5_1.hdmf_common_table import ( from ...hdmf_common.v1_5_1.hdmf_common_table import (
VectorData, VectorData,
@ -25,7 +17,15 @@ from ...hdmf_common.v1_5_1.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_experimental.v0_2_0.hdmf_experimental_experimental import EnumData from ...hdmf_common.v1_5_1.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_2_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesEntities,
ExternalResourcesResources,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "0.2.0" version = "0.2.0"

20
nwb_models/src/nwb_models/models/pydantic/hdmf_experimental/v0_3_0/namespace.py
View file

@ -7,15 +7,7 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_3_0.hdmf_experimental_resources import ( from ...hdmf_experimental.v0_3_0.hdmf_experimental_experimental import EnumData
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesFiles,
ExternalResourcesEntities,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
from ...hdmf_common.v1_6_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_6_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_6_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_6_0.hdmf_common_table import ( from ...hdmf_common.v1_6_0.hdmf_common_table import (
VectorData, VectorData,
@ -25,7 +17,15 @@ from ...hdmf_common.v1_6_0.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_experimental.v0_3_0.hdmf_experimental_experimental import EnumData from ...hdmf_common.v1_6_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_3_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesFiles,
ExternalResourcesEntities,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "0.3.0" version = "0.3.0"

22
nwb_models/src/nwb_models/models/pydantic/hdmf_experimental/v0_4_0/namespace.py
View file

@ -7,16 +7,7 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_4_0.hdmf_experimental_resources import ( from ...hdmf_experimental.v0_4_0.hdmf_experimental_experimental import EnumData
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesFiles,
ExternalResourcesEntities,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
ExternalResourcesEntityKeys,
)
from ...hdmf_common.v1_7_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_7_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_7_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_7_0.hdmf_common_table import ( from ...hdmf_common.v1_7_0.hdmf_common_table import (
VectorData, VectorData,
@ -26,7 +17,16 @@ from ...hdmf_common.v1_7_0.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_experimental.v0_4_0.hdmf_experimental_experimental import EnumData from ...hdmf_common.v1_7_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_4_0.hdmf_experimental_resources import (
ExternalResources,
ExternalResourcesKeys,
ExternalResourcesFiles,
ExternalResourcesEntities,
ExternalResourcesObjects,
ExternalResourcesObjectKeys,
ExternalResourcesEntityKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "0.4.0" version = "0.4.0"

22
nwb_models/src/nwb_models/models/pydantic/hdmf_experimental/v0_5_0/namespace.py
View file

@ -7,16 +7,7 @@ import sys
from typing import Any, ClassVar, List, Literal, Dict, Optional, Union from typing import Any, ClassVar, List, Literal, Dict, Optional, Union
from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator from pydantic import BaseModel, ConfigDict, Field, RootModel, field_validator
import numpy as np import numpy as np
from ...hdmf_experimental.v0_5_0.hdmf_experimental_resources import ( from ...hdmf_experimental.v0_5_0.hdmf_experimental_experimental import EnumData
HERD,
HERDKeys,
HERDFiles,
HERDEntities,
HERDObjects,
HERDObjectKeys,
HERDEntityKeys,
)
from ...hdmf_common.v1_8_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_common.v1_8_0.hdmf_common_base import Data, Container, SimpleMultiContainer from ...hdmf_common.v1_8_0.hdmf_common_base import Data, Container, SimpleMultiContainer
from ...hdmf_common.v1_8_0.hdmf_common_table import ( from ...hdmf_common.v1_8_0.hdmf_common_table import (
VectorData, VectorData,
@ -26,7 +17,16 @@ from ...hdmf_common.v1_8_0.hdmf_common_table import (
DynamicTable, DynamicTable,
AlignedDynamicTable, AlignedDynamicTable,
) )
from ...hdmf_experimental.v0_5_0.hdmf_experimental_experimental import EnumData from ...hdmf_common.v1_8_0.hdmf_common_sparse import CSRMatrix, CSRMatrixData
from ...hdmf_experimental.v0_5_0.hdmf_experimental_resources import (
HERD,
HERDKeys,
HERDFiles,
HERDEntities,
HERDObjects,
HERDObjectKeys,
HERDEntityKeys,
)
metamodel_version = "None" metamodel_version = "None"
version = "0.5.0" version = "0.5.0"

15
nwb_models/src/nwb_models/schema/linkml/core/v2_2_0/core.nwb.base.yaml
View file

@ -283,14 +283,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_2_0/core.nwb.behavior.yaml
View file

@ -91,13 +91,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -105,13 +104,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -119,39 +117,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -162,24 +157,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_2_0/core.nwb.ecephys.yaml
View file

@ -236,13 +236,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -259,13 +258,12 @@ classes:
the ElectricalSeries. the ElectricalSeries.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -274,13 +272,12 @@ classes:
properties should be noted in the ElectricalSeries description or comments field. properties should be noted in the ElectricalSeries description or comments field.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_2_0/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
ImagingPlane: ImagingPlane:
name: ImagingPlane name: ImagingPlane
@ -388,11 +385,10 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface
tree_root: true tree_root: true

15
nwb_models/src/nwb_models/schema/linkml/core/v2_2_1/core.nwb.base.yaml
View file

@ -283,14 +283,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_2_1/core.nwb.behavior.yaml
View file

@ -91,13 +91,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -105,13 +104,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -119,39 +117,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -162,24 +157,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_2_1/core.nwb.ecephys.yaml
View file

@ -236,13 +236,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -259,13 +258,12 @@ classes:
the ElectricalSeries. the ElectricalSeries.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -274,13 +272,12 @@ classes:
properties should be noted in the ElectricalSeries description or comments field. properties should be noted in the ElectricalSeries description or comments field.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_2_1/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
ImagingPlane: ImagingPlane:
name: ImagingPlane name: ImagingPlane
@ -388,11 +385,10 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface
tree_root: true tree_root: true

15
nwb_models/src/nwb_models/schema/linkml/core/v2_2_2/core.nwb.base.yaml
View file

@ -283,14 +283,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_2_2/core.nwb.behavior.yaml
View file

@ -91,13 +91,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -105,13 +104,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -119,39 +117,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -162,24 +157,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_2_2/core.nwb.ecephys.yaml
View file

@ -236,13 +236,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -259,13 +258,12 @@ classes:
the ElectricalSeries. the ElectricalSeries.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -274,13 +272,12 @@ classes:
properties should be noted in the ElectricalSeries description or comments field. properties should be noted in the ElectricalSeries description or comments field.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_2_2/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
ImagingPlane: ImagingPlane:
name: ImagingPlane name: ImagingPlane
@ -388,11 +385,10 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface
tree_root: true tree_root: true

15
nwb_models/src/nwb_models/schema/linkml/core/v2_2_4/core.nwb.base.yaml
View file

@ -283,14 +283,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_2_4/core.nwb.behavior.yaml
View file

@ -91,13 +91,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -105,13 +104,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -119,39 +117,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -162,24 +157,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_2_4/core.nwb.ecephys.yaml
View file

@ -236,13 +236,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -259,13 +258,12 @@ classes:
the ElectricalSeries. the ElectricalSeries.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -274,13 +272,12 @@ classes:
properties should be noted in the ElectricalSeries description or comments field. properties should be noted in the ElectricalSeries description or comments field.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_2_4/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: PlaneSegmentation
- range: PlaneSegmentation
tree_root: true tree_root: true
PlaneSegmentation: PlaneSegmentation:
name: PlaneSegmentation name: PlaneSegmentation
@ -562,13 +559,12 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: CorrectedImageStack
- range: CorrectedImageStack
tree_root: true tree_root: true
CorrectedImageStack: CorrectedImageStack:
name: CorrectedImageStack name: CorrectedImageStack

15
nwb_models/src/nwb_models/schema/linkml/core/v2_2_5/core.nwb.base.yaml
View file

@ -283,14 +283,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_2_5/core.nwb.behavior.yaml
View file

@ -91,13 +91,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -105,13 +104,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -119,39 +117,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -162,24 +157,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_2_5/core.nwb.ecephys.yaml
View file

@ -236,13 +236,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -259,13 +258,12 @@ classes:
the ElectricalSeries. the ElectricalSeries.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -274,13 +272,12 @@ classes:
properties should be noted in the ElectricalSeries description or comments field. properties should be noted in the ElectricalSeries description or comments field.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_2_5/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: PlaneSegmentation
- range: PlaneSegmentation
tree_root: true tree_root: true
PlaneSegmentation: PlaneSegmentation:
name: PlaneSegmentation name: PlaneSegmentation
@ -568,13 +565,12 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: CorrectedImageStack
- range: CorrectedImageStack
tree_root: true tree_root: true
CorrectedImageStack: CorrectedImageStack:
name: CorrectedImageStack name: CorrectedImageStack

15
nwb_models/src/nwb_models/schema/linkml/core/v2_3_0/core.nwb.base.yaml
View file

@ -297,14 +297,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_3_0/core.nwb.behavior.yaml
View file

@ -91,13 +91,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -105,13 +104,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -119,39 +117,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -162,24 +157,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_3_0/core.nwb.ecephys.yaml
View file

@ -247,13 +247,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -270,13 +269,12 @@ classes:
the ElectricalSeries 'filtering' attribute. the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -285,13 +283,12 @@ classes:
properties should be noted in the ElectricalSeries 'filtering' attribute. properties should be noted in the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_3_0/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: PlaneSegmentation
- range: PlaneSegmentation
tree_root: true tree_root: true
PlaneSegmentation: PlaneSegmentation:
name: PlaneSegmentation name: PlaneSegmentation
@ -568,13 +565,12 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: CorrectedImageStack
- range: CorrectedImageStack
tree_root: true tree_root: true
CorrectedImageStack: CorrectedImageStack:
name: CorrectedImageStack name: CorrectedImageStack

15
nwb_models/src/nwb_models/schema/linkml/core/v2_4_0/core.nwb.base.yaml
View file

@ -337,14 +337,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_4_0/core.nwb.behavior.yaml
View file

@ -91,13 +91,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -105,13 +104,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -119,39 +117,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -162,24 +157,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_4_0/core.nwb.ecephys.yaml
View file

@ -247,13 +247,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -270,13 +269,12 @@ classes:
the ElectricalSeries 'filtering' attribute. the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -285,13 +283,12 @@ classes:
properties should be noted in the ElectricalSeries 'filtering' attribute. properties should be noted in the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_4_0/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: PlaneSegmentation
- range: PlaneSegmentation
tree_root: true tree_root: true
PlaneSegmentation: PlaneSegmentation:
name: PlaneSegmentation name: PlaneSegmentation
@ -568,13 +565,12 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: CorrectedImageStack
- range: CorrectedImageStack
tree_root: true tree_root: true
CorrectedImageStack: CorrectedImageStack:
name: CorrectedImageStack name: CorrectedImageStack

15
nwb_models/src/nwb_models/schema/linkml/core/v2_5_0/core.nwb.base.yaml
View file

@ -366,14 +366,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_5_0/core.nwb.behavior.yaml
View file

@ -103,13 +103,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -117,13 +116,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -131,39 +129,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -174,24 +169,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_5_0/core.nwb.ecephys.yaml
View file

@ -247,13 +247,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -270,13 +269,12 @@ classes:
the ElectricalSeries 'filtering' attribute. the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -285,13 +283,12 @@ classes:
properties should be noted in the ElectricalSeries 'filtering' attribute. properties should be noted in the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_5_0/core.nwb.ophys.yaml
View file

@ -110,13 +110,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -125,13 +124,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -144,13 +142,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: PlaneSegmentation
- range: PlaneSegmentation
tree_root: true tree_root: true
PlaneSegmentation: PlaneSegmentation:
name: PlaneSegmentation name: PlaneSegmentation
@ -568,13 +565,12 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: CorrectedImageStack
- range: CorrectedImageStack
tree_root: true tree_root: true
CorrectedImageStack: CorrectedImageStack:
name: CorrectedImageStack name: CorrectedImageStack

15
nwb_models/src/nwb_models/schema/linkml/core/v2_6_0_alpha/core.nwb.base.yaml
View file

@ -366,14 +366,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_6_0_alpha/core.nwb.behavior.yaml
View file

@ -103,13 +103,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -117,13 +116,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -131,39 +129,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -174,24 +169,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_6_0_alpha/core.nwb.ecephys.yaml
View file

@ -247,13 +247,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -270,13 +269,12 @@ classes:
the ElectricalSeries 'filtering' attribute. the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -285,13 +283,12 @@ classes:
properties should be noted in the ElectricalSeries 'filtering' attribute. properties should be noted in the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_6_0_alpha/core.nwb.ophys.yaml
View file

@ -163,13 +163,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -178,13 +177,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -197,13 +195,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: PlaneSegmentation
- range: PlaneSegmentation
tree_root: true tree_root: true
PlaneSegmentation: PlaneSegmentation:
name: PlaneSegmentation name: PlaneSegmentation
@ -621,13 +618,12 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: CorrectedImageStack
- range: CorrectedImageStack
tree_root: true tree_root: true
CorrectedImageStack: CorrectedImageStack:
name: CorrectedImageStack name: CorrectedImageStack

15
nwb_models/src/nwb_models/schema/linkml/core/v2_7_0/core.nwb.base.yaml
View file

@ -366,14 +366,13 @@ classes:
description: A collection of processed data. description: A collection of processed data.
is_a: NWBContainer is_a: NWBContainer
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: NWBDataInterface
- range: NWBDataInterface - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true
Images: Images:
name: Images name: Images

91
nwb_models/src/nwb_models/schema/linkml/core/v2_7_0/core.nwb.behavior.yaml
View file

@ -103,13 +103,12 @@ classes:
events. BehavioralTimeSeries is for continuous data. events. BehavioralTimeSeries is for continuous data.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: IntervalSeries
- range: IntervalSeries
tree_root: true tree_root: true
BehavioralEvents: BehavioralEvents:
name: BehavioralEvents name: BehavioralEvents
@ -117,13 +116,12 @@ classes:
for more details. for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
BehavioralTimeSeries: BehavioralTimeSeries:
name: BehavioralTimeSeries name: BehavioralTimeSeries
@ -131,39 +129,36 @@ classes:
of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details. of <a href="#BehavioralEpochs">BehavioralEpochs</a> for more details.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
PupilTracking: PupilTracking:
name: PupilTracking name: PupilTracking
description: Eye-tracking data, representing pupil size. description: Eye-tracking data, representing pupil size.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: TimeSeries
- range: TimeSeries
tree_root: true tree_root: true
EyeTracking: EyeTracking:
name: EyeTracking name: EyeTracking
description: Eye-tracking data, representing direction of gaze. description: Eye-tracking data, representing direction of gaze.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
CompassDirection: CompassDirection:
name: CompassDirection name: CompassDirection
@ -174,24 +169,22 @@ classes:
be radians or degrees. be radians or degrees.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true
Position: Position:
name: Position name: Position
description: Position data, whether along the x, x/y or x/y/z axis. description: Position data, whether along the x, x/y or x/y/z axis.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpatialSeries
- range: SpatialSeries
tree_root: true tree_root: true

39
nwb_models/src/nwb_models/schema/linkml/core/v2_7_0/core.nwb.ecephys.yaml
View file

@ -247,13 +247,12 @@ classes:
during experiment acquisition. during experiment acquisition.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: SpikeEventSeries
- range: SpikeEventSeries
tree_root: true tree_root: true
FilteredEphys: FilteredEphys:
name: FilteredEphys name: FilteredEphys
@ -270,13 +269,12 @@ classes:
the ElectricalSeries 'filtering' attribute. the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
LFP: LFP:
name: LFP name: LFP
@ -285,13 +283,12 @@ classes:
properties should be noted in the ElectricalSeries 'filtering' attribute. properties should be noted in the ElectricalSeries 'filtering' attribute.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: ElectricalSeries
- range: ElectricalSeries
tree_root: true tree_root: true
ElectrodeGroup: ElectrodeGroup:
name: ElectrodeGroup name: ElectrodeGroup

52
nwb_models/src/nwb_models/schema/linkml/core/v2_7_0/core.nwb.ophys.yaml
View file

@ -163,13 +163,12 @@ classes:
for image planes). for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
Fluorescence: Fluorescence:
name: Fluorescence name: Fluorescence
@ -178,13 +177,12 @@ classes:
for ROIs and for image planes). for ROIs and for image planes).
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: RoiResponseSeries
- range: RoiResponseSeries
tree_root: true tree_root: true
ImageSegmentation: ImageSegmentation:
name: ImageSegmentation name: ImageSegmentation
@ -197,13 +195,12 @@ classes:
is required and ROI names should remain consistent between them. is required and ROI names should remain consistent between them.
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: PlaneSegmentation
- range: PlaneSegmentation
tree_root: true tree_root: true
PlaneSegmentation: PlaneSegmentation:
name: PlaneSegmentation name: PlaneSegmentation
@ -621,13 +618,12 @@ classes:
frame at each point in time is assumed to be 2-D (has only x & y dimensions).' frame at each point in time is assumed to be 2-D (has only x & y dimensions).'
is_a: NWBDataInterface is_a: NWBDataInterface
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: CorrectedImageStack
- range: CorrectedImageStack
tree_root: true tree_root: true
CorrectedImageStack: CorrectedImageStack:
name: CorrectedImageStack name: CorrectedImageStack

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_2_1/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers description: A simple Container for holding onto multiple containers
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_3_0/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers. description: A simple Container for holding onto multiple containers.
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_4_0/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers. description: A simple Container for holding onto multiple containers.
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_5_0/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers. description: A simple Container for holding onto multiple containers.
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_5_0/hdmf-common.table.yaml
View file

@ -182,11 +182,10 @@ classes:
by a separate DynamicTable stored within the group. by a separate DynamicTable stored within the group.
is_a: DynamicTable is_a: DynamicTable
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_5_1/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers. description: A simple Container for holding onto multiple containers.
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_5_1/hdmf-common.table.yaml
View file

@ -182,11 +182,10 @@ classes:
by a separate DynamicTable stored within the group. by a separate DynamicTable stored within the group.
is_a: DynamicTable is_a: DynamicTable
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_6_0/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers. description: A simple Container for holding onto multiple containers.
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_6_0/hdmf-common.table.yaml
View file

@ -182,11 +182,10 @@ classes:
by a separate DynamicTable stored within the group. by a separate DynamicTable stored within the group.
is_a: DynamicTable is_a: DynamicTable
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_7_0/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers. description: A simple Container for holding onto multiple containers.
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_7_0/hdmf-common.table.yaml
View file

@ -182,11 +182,10 @@ classes:
by a separate DynamicTable stored within the group. by a separate DynamicTable stored within the group.
is_a: DynamicTable is_a: DynamicTable
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_8_0/hdmf-common.base.yaml
View file

@ -36,11 +36,10 @@ classes:
description: A simple Container for holding onto multiple containers. description: A simple Container for holding onto multiple containers.
is_a: Container is_a: Container
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: Container
- range: Container
tree_root: true tree_root: true

13
nwb_models/src/nwb_models/schema/linkml/hdmf_common/v1_8_0/hdmf-common.table.yaml
View file

@ -182,11 +182,10 @@ classes:
by a separate DynamicTable stored within the group. by a separate DynamicTable stored within the group.
is_a: DynamicTable is_a: DynamicTable
attributes: attributes:
value: - name: value
name: value multivalued: true
multivalued: true inlined: true
inlined: true inlined_as_list: false
inlined_as_list: false any_of:
any_of: - range: DynamicTable
- range: DynamicTable
tree_root: true tree_root: true