25 commits

Author	SHA1	Message	Date
sneakers-the-rat	7a0da1528c	regenerate models	2024-09-26 01:27:36 -07:00
sneakers-the-rat	f9f1d49fca	working complete, strict validating io :)	2024-09-26 01:02:16 -07:00
sneakers-the-rat	cad57554fd	get ting there, working rolldown of extra attributes, but something still funny in patchclampseries children w.r.t. losing attributes in data	2024-09-13 23:05:34 -07:00
sneakers-the-rat	27b5dddfdd	updating model generation methods, still some models being converted to str instead of being inlined, but almost there	2024-09-04 00:04:21 -07:00
sneakers-the-rat	97135c14f2	update models to correctly handle ElementIdentifiers	2024-09-02 18:46:02 -07:00
sneakers-the-rat	fac18ab147	copy and overwrite rather than shutil.move in generate	2024-08-27 20:49:53 -07:00
sneakers-the-rat	582ac5f09c	parallel builds, remove monkeypatches	2024-08-20 22:45:24 -07:00
sneakers-the-rat	0c51f00596	aha fix black formatting include, generate core by cloning into tmp directory	2024-08-20 20:26:00 -07:00
sneakers-the-rat	a7a935d508	initial refactor	2024-08-15 23:31:40 -07:00
sneakers-the-rat	dd99ac24eb	regenerate models	2024-08-12 19:25:48 -07:00
sneakers-the-rat	994b79e0f2	actually no that's stupid, linkml handles inheritance except for the one special case of compound dtypes which aren't a thing in linkml and are here used exclusively for 1d vectors.	2024-08-12 19:25:12 -07:00
sneakers-the-rat	a993ee10f2	continue removing nptyping, actually fix indexing	2024-08-06 21:40:23 -07:00
sneakers-the-rat	da6d0d8608	correctly handle attributes	2024-08-05 18:41:38 -07:00
sneakers-the-rat	374bd8971d	fix name array -> value in hdmf mixins	2024-08-05 17:06:59 -07:00
sneakers-the-rat	b3b5b9d793	unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups.	2024-08-05 16:05:44 -07:00
sneakers-the-rat	d118477d8a	add dynamictable, vectordata, vectorindex mixins	2024-07-31 01:13:31 -07:00
sneakers-the-rat	19e49cf68d	regenerate models after fixing classvar mutation in numpydantic linkml branch	2024-07-29 17:34:28 -07:00
sneakers-the-rat	2f59f0a69b	refactor providers into modules	2024-07-09 23:52:58 -07:00
sneakers-the-rat	34c8be3a2c	functional docs build	2024-07-08 21:37:02 -07:00
sneakers-the-rat	ccf267babd	regenerating models, some minor code cleanup and coverage omissions	2023-09-15 00:37:20 -07:00
sneakers-the-rat	e6a41415f5	successfully building many versions of nwb schema. ... working on hdf5 importing, come back to it when fresh, just sorta poking at it because it's so close.	2023-09-14 02:45:01 -07:00
sneakers-the-rat	ccc09de400	refactor nwb_linkml to src layout	2023-09-05 19:25:20 -07:00
sneakers-the-rat	9dd7304334	Working recursion! and also handling multiple array shapes, and properly handling unnamed classes	2023-08-31 20:56:21 -07:00
sneakers-the-rat	be21325123	Cleaner code generation, npytyping type hints for arrays ... - split off generated subclasses into "include" files, not sure if that's good, but in any case we have them separable now. - more work on cleanly un-nesting scalar and 1D-vector data into attributes and lists, respectively - brought the pydantic generator in-repo to do a bunch of overrides	2023-08-28 22:16:58 -07:00
sneakers-the-rat	4faaa8efe8	I believe that's a full translation ... or at least all the semantics are present. it's not pretty by any stretch of the imagination	2023-08-25 00:22:47 -07:00