3b11afded6
fix truncate hdf5 file to not try and write while iterating
2023-10-04 20:19:54 -07:00
ab63ea071c
removing pandas
2023-10-04 18:02:40 -07:00
9947edfed2
Removing DataFrame type from imports, leaving as stub
2023-10-04 17:59:10 -07:00
f672b931e5
Correctly handle container classes, use dicts instead of lists to be able to index by name. overriding __getitem__ and __getattr__ later
2023-09-26 20:50:11 -07:00
d16b4757e1
Use dask instead of trying to make a dataframe
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compress arrays when serializing to json
2023-09-26 19:50:49 -07:00
50e816bad4
Working on finalizing the mapping operation... doing it single threaded for now and it's very slow but it completes up until the stage where we need to zip up the orphaned objects and other things that can be inferred from the model.
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Need to make a proxytable model like proxyarray because reading all these tables takes way too fuckin long and it's not what we want to do anyway.
2023-09-25 22:03:53 -07:00
ce75dacf93
autogenerating models for dynamictable
2023-09-23 01:33:28 -07:00
57fa3d34a2
pandas dataframe mimic
2023-09-23 00:08:59 -07:00
aac0c7abdd
need 2 stop for the night but its sort of happening
2023-09-22 02:48:40 -07:00
40984a6582
figuring out the strategy here...
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- added linkml_meta classvar to store additional linkml properties if needed
- injecting path field to metaclass
- sketch of doing a queue-based read
- prune datasets & example allen institute data
2023-09-22 00:31:34 -07:00
3e2e6915cf
Add ability to make JSON schema with numpy arrays!
2023-09-14 23:43:00 -07:00
e6a41415f5
successfully building many versions of nwb schema.
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working on hdf5 importing, come back to it when fresh, just sorta poking at it because it's so close.
2023-09-14 02:45:01 -07:00
095d0bc6a9
fixing tests by using temp directory and changing random prior commit hash from nwb core schema
2023-09-11 19:55:45 -07:00
c69cbdfb38
Docstrings and basic tests for providers.
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bugfix - remove redundant language elements that cause a recursion error (eg. subtyping "float" with "float")
2023-09-11 19:38:29 -07:00
2e87fa0556
working generation from provider
2023-09-08 19:46:42 -07:00
0b0fb6c67a
cute progress bar and also linkml provider works
2023-09-08 16:12:19 -07:00
2b828082e0
perf enhancements to pydantic generation
2023-09-06 22:48:47 -07:00
6a9d612b41
i'm just sorta making a mess here. coming back tomorrow
2023-09-06 00:50:49 -07:00
201ed569de
no working-directory in actions
2023-09-05 21:53:16 -07:00
da2eaea51e
some baseline tests, fixing imports, coverage reports
2023-09-05 21:47:41 -07:00
ccc09de400
refactor nwb_linkml to src layout
2023-09-05 19:25:20 -07:00
