6ff7e6baab
correct docs toctree depth so homepage isn't so hectic
2023-09-11 19:57:29 -07:00
095d0bc6a9
fixing tests by using temp directory and changing random prior commit hash from nwb core schema
2023-09-11 19:55:45 -07:00
c69cbdfb38
Docstrings and basic tests for providers.
...
bugfix - remove redundant language elements that cause a recursion error (eg. subtyping "float" with "float")
2023-09-11 19:38:29 -07:00
2e87fa0556
working generation from provider
2023-09-08 19:46:42 -07:00
0b0fb6c67a
cute progress bar and also linkml provider works
2023-09-08 16:12:19 -07:00
d15ba8e2e1
fixing docs build
2023-09-07 19:58:38 -07:00
0cc1dbd862
fixing docs build
2023-09-07 19:53:12 -07:00
42ac8e6d7b
fixing docs build
2023-09-07 19:48:58 -07:00
43f35c50d8
fixing docs build
2023-09-07 19:39:19 -07:00
75b710c3eb
docs!
2023-09-07 19:32:17 -07:00
a01bb49b1e
working on providers to cache generated models
2023-09-07 18:50:50 -07:00
0ec09a035a
commit hdf5 starts
2023-09-07 14:09:27 -07:00
2b828082e0
perf enhancements to pydantic generation
2023-09-06 22:48:47 -07:00
7b97b749ef
monkeypatch to fix perf problems from nptyping
2023-09-06 19:32:33 -07:00
6a9d612b41
i'm just sorta making a mess here. coming back tomorrow
2023-09-06 00:50:49 -07:00
85beef4276
trying to get absolute paths out of coverage report
2023-09-05 22:54:20 -07:00
ecbb106581
proper .coveragerc formatting
2023-09-05 22:45:26 -07:00
456a5315d2
abandoning github action build
2023-09-05 22:42:46 -07:00
ce5cd18212
move to .coveragerc
2023-09-05 22:37:41 -07:00
2e1130c3f6
passing test directory???
2023-09-05 22:29:48 -07:00
fcd4f70442
explicit configuration passing
2023-09-05 22:21:30 -07:00
3d69213afe
optional?
2023-09-05 22:13:43 -07:00
3cb5e74ab8
upload to pypi
2023-09-05 22:10:10 -07:00
3bcf68d319
correct path
2023-09-05 21:59:19 -07:00
536de57ce4
correct path
2023-09-05 21:57:19 -07:00
2d8df6d2dc
cant include package when out of working directory
2023-09-05 21:55:41 -07:00
201ed569de
no working-directory in actions
2023-09-05 21:53:16 -07:00
da2eaea51e
some baseline tests, fixing imports, coverage reports
2023-09-05 21:47:41 -07:00
ccc09de400
refactor nwb_linkml to src layout
2023-09-05 19:25:20 -07:00
9306f7e688
remove debugging flag
2023-09-04 22:00:43 -07:00
78d2ec59d7
- Able to complete build all the way through to importing generated classes
2023-09-04 21:46:17 -07:00
8f4f99cffd
- Get imports for parent class slots
...
- Handle scalar valued datasets with subattributes
- start on hdf5
2023-09-04 16:16:29 -07:00
bb9dda6e66
- Don't split schema into includes and base
...
- Import top-level classes in namespaces pydantic file
- Don't generate or import the arraylike class
2023-09-04 14:56:36 -07:00
9dd7304334
Working recursion! and also handling multiple array shapes, and properly handling unnamed classes
2023-08-31 20:56:21 -07:00
c45458e748
github test action
2023-08-31 15:44:43 -07:00
4ee77dbb2e
update to pydantic 2
2023-08-31 15:36:58 -07:00
3568037a1e
Need to go home, in the middle of refactoring group and dataset as well as implementing the name property correctly
2023-08-31 00:01:43 -07:00
fd9aef9531
Cleaner code generation, npytyping type hints for arrays
...
- split off generated subclasses into "include" files, not sure if that's good, but in any case we have them separable now.
- more work on cleanly un-nesting scalar and 1D-vector data into attributes and lists, respectively
- brought the pydantic generator in-repo to do a bunch of overrides
2023-08-30 20:56:30 -07:00
be21325123
Cleaner code generation, npytyping type hints for arrays
...
- split off generated subclasses into "include" files, not sure if that's good, but in any case we have them separable now.
- more work on cleanly un-nesting scalar and 1D-vector data into attributes and lists, respectively
- brought the pydantic generator in-repo to do a bunch of overrides
2023-08-28 22:16:58 -07:00
63c6cef10b
Cleaned up old files, added some mysteriously delayed pydantic models, and submitted to pypi to keep the package name.
2023-08-25 00:52:12 -07:00
4faaa8efe8
I believe that's a full translation
...
or at least all the semantics are present. it's not pretty by any stretch of the imagination
2023-08-25 00:22:47 -07:00
a4806543ef
recursion works, more formal build method in adapters
2023-08-23 19:56:09 -07:00
170a424fb1
Actually generating some translations at this point
2023-08-21 21:43:02 -07:00
3996f319e2
some vague sketching on mapping namespaces
2023-08-20 23:00:58 -07:00
111965aace
working schema language import
2023-08-18 22:09:28 -07:00
fe44c1c657
patch pydantic code generation, use anytype for dims because modeling lists of lists is not possible
2023-08-18 16:33:06 -07:00
63ccd800b3
progress with using pydantic models
2023-08-18 01:11:14 -07:00
e8adb4f88c
first draft linkml schema
2023-08-16 23:47:35 -07:00
5c69c48f35
make linkml cookiecutter
2023-08-16 16:07:36 -07:00
cee4f3146b
moving notes to own folder
2023-08-15 02:25:21 -07:00
