57fa3d34a2
pandas dataframe mimic
2023-09-23 00:08:59 -07:00
aac0c7abdd
need 2 stop for the night but its sort of happening
2023-09-22 02:48:40 -07:00
40984a6582
figuring out the strategy here...
...
- added linkml_meta classvar to store additional linkml properties if needed
- injecting path field to metaclass
- sketch of doing a queue-based read
- prune datasets & example allen institute data
2023-09-22 00:31:34 -07:00
321740f674
weird python relative import error from not having version naming
2023-09-15 01:06:50 -07:00
1f61dca46f
weird python relative import error from not having version naming
2023-09-15 01:03:40 -07:00
94c204e8ea
ok but really actually correct paths
2023-09-15 00:53:07 -07:00
b283e8b0bf
get correct path for provider
2023-09-15 00:50:16 -07:00
ccf267babd
regenerating models, some minor code cleanup and coverage omissions
2023-09-15 00:37:20 -07:00
3e2e6915cf
Add ability to make JSON schema with numpy arrays!
2023-09-14 23:43:00 -07:00
e6a41415f5
successfully building many versions of nwb schema.
...
working on hdf5 importing, come back to it when fresh, just sorta poking at it because it's so close.
2023-09-14 02:45:01 -07:00
32f81fd409
more toctree limiting?
2023-09-11 22:26:15 -07:00
054ca8fd5e
add monkeypatch to schemaview
2023-09-11 22:23:42 -07:00
6ff7e6baab
correct docs toctree depth so homepage isn't so hectic
2023-09-11 19:57:29 -07:00
095d0bc6a9
fixing tests by using temp directory and changing random prior commit hash from nwb core schema
2023-09-11 19:55:45 -07:00
c69cbdfb38
Docstrings and basic tests for providers.
...
bugfix - remove redundant language elements that cause a recursion error (eg. subtyping "float" with "float")
2023-09-11 19:38:29 -07:00
2e87fa0556
working generation from provider
2023-09-08 19:46:42 -07:00
0b0fb6c67a
cute progress bar and also linkml provider works
2023-09-08 16:12:19 -07:00
d15ba8e2e1
fixing docs build
2023-09-07 19:58:38 -07:00
0cc1dbd862
fixing docs build
2023-09-07 19:53:12 -07:00
42ac8e6d7b
fixing docs build
2023-09-07 19:48:58 -07:00
43f35c50d8
fixing docs build
2023-09-07 19:39:19 -07:00
75b710c3eb
docs!
2023-09-07 19:32:17 -07:00
a01bb49b1e
working on providers to cache generated models
2023-09-07 18:50:50 -07:00
0ec09a035a
commit hdf5 starts
2023-09-07 14:09:27 -07:00
2b828082e0
perf enhancements to pydantic generation
2023-09-06 22:48:47 -07:00
7b97b749ef
monkeypatch to fix perf problems from nptyping
2023-09-06 19:32:33 -07:00
6a9d612b41
i'm just sorta making a mess here. coming back tomorrow
2023-09-06 00:50:49 -07:00
85beef4276
trying to get absolute paths out of coverage report
2023-09-05 22:54:20 -07:00
ecbb106581
proper .coveragerc formatting
2023-09-05 22:45:26 -07:00
456a5315d2
abandoning github action build
2023-09-05 22:42:46 -07:00
ce5cd18212
move to .coveragerc
2023-09-05 22:37:41 -07:00
2e1130c3f6
passing test directory???
2023-09-05 22:29:48 -07:00
fcd4f70442
explicit configuration passing
2023-09-05 22:21:30 -07:00
3d69213afe
optional?
2023-09-05 22:13:43 -07:00
3cb5e74ab8
upload to pypi
2023-09-05 22:10:10 -07:00
3bcf68d319
correct path
2023-09-05 21:59:19 -07:00
536de57ce4
correct path
2023-09-05 21:57:19 -07:00
2d8df6d2dc
cant include package when out of working directory
2023-09-05 21:55:41 -07:00
201ed569de
no working-directory in actions
2023-09-05 21:53:16 -07:00
da2eaea51e
some baseline tests, fixing imports, coverage reports
2023-09-05 21:47:41 -07:00
ccc09de400
refactor nwb_linkml to src layout
2023-09-05 19:25:20 -07:00
9306f7e688
remove debugging flag
2023-09-04 22:00:43 -07:00
78d2ec59d7
- Able to complete build all the way through to importing generated classes
2023-09-04 21:46:17 -07:00
8f4f99cffd
- Get imports for parent class slots
...
- Handle scalar valued datasets with subattributes
- start on hdf5
2023-09-04 16:16:29 -07:00
bb9dda6e66
- Don't split schema into includes and base
...
- Import top-level classes in namespaces pydantic file
- Don't generate or import the arraylike class
2023-09-04 14:56:36 -07:00
9dd7304334
Working recursion! and also handling multiple array shapes, and properly handling unnamed classes
2023-08-31 20:56:21 -07:00
c45458e748
github test action
2023-08-31 15:44:43 -07:00
4ee77dbb2e
update to pydantic 2
2023-08-31 15:36:58 -07:00
3568037a1e
Need to go home, in the middle of refactoring group and dataset as well as implementing the name property correctly
2023-08-31 00:01:43 -07:00
fd9aef9531
Cleaner code generation, npytyping type hints for arrays
...
- split off generated subclasses into "include" files, not sure if that's good, but in any case we have them separable now.
- more work on cleanly un-nesting scalar and 1D-vector data into attributes and lists, respectively
- brought the pydantic generator in-repo to do a bunch of overrides
2023-08-30 20:56:30 -07:00
