import pytest import shutil import yaml from nwb_linkml.providers.git import GitRepo, NWB_CORE_REPO, HDMF_COMMON_REPO from nwb_schema_language import Namespaces @pytest.mark.parametrize( ['source', 'commit'], [ (NWB_CORE_REPO, 'b4f8838cbfbb7f8a117bd7e0aad19133d26868b4'), (HDMF_COMMON_REPO, '660b6ac0780dd9d2cb1e56fea8b62c671ca5e2c8') ] ) def test_gitrepo(source, commit): """ Basic functionality of GitRepo """ repo = GitRepo(source) # make a temp directory that exists first_dir = repo.temp_directory assert repo.temp_directory.exists() # find the same repository when it's deleted shutil.rmtree(str(repo.temp_directory)) repo._temp_directory = None second_dir = repo.temp_directory assert first_dir == second_dir # successfully clone the repository after its deleted assert not any(repo.temp_directory.iterdir()) repo.clone() # check that the namespace file exists and has some expected fields assert repo.namespace_file.exists() with open(repo.namespace_file, 'r') as nsfile: ns = yaml.safe_load(nsfile) # correct model instantiation confirms the repo was cloned successfully ns_model = Namespaces(**ns) # setting commit should change the active commit prior_commit = repo.active_commit repo.commit = commit assert prior_commit != repo.active_commit assert repo.active_commit == commit assert repo.commit == commit # remote is gotten correctly assert repo.remote == str(source.repository) # cleanup should remove files repo.cleanup() assert not any(repo.temp_directory.iterdir()) @pytest.mark.parametrize( ['source', 'commit'], [ (NWB_CORE_REPO, 'b4f8838cbfbb7f8a117bd7e0aad19133d26868b4') ] ) def test_gitrepo_check(source, commit): """ Our check method should flag common problems with the repo """ repo = GitRepo(NWB_CORE_REPO, commit=commit) # cleanup is tested separately repo.cleanup() # check should fail without warning when the repo is empty assert not repo.check() repo.clone() assert repo.check() # check should fail when repo is at wrong commit assert repo.active_commit == commit repo._git_call('checkout', 'HEAD~10') with pytest.warns(UserWarning, match=".*wrong commit.*"): assert not repo.check() repo.commit = commit assert repo.active_commit == commit assert repo.check() # check should fail on repo namespace mismatch old_repo = repo.namespace.repository repo.namespace.repository = "https://example.com/a/git/repository" with pytest.warns(UserWarning, match='.*wrong remote.*'): assert not repo.check() repo.namespace.repository = old_repo assert repo.check()