[project]
description = "Monorepo root for nwb-linkml"
dependencies = []
requires-python = "<3.13,>=3.10"

[tool.pdm.dev-dependencies]
dev = [
    '-e nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml',
    '-e nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language',
    '-e docs @ file:///${PROJECT_ROOT}/docs',
    "ruff>=0.5.0",
    "black>=24.4.2",
]

[tool.codespell]
# Ref: https://github.com/codespell-project/codespell#using-a-config-file
skip = '.git*,*.lock,*.css,./nwb_linkml/src/nwb_linkml/models,./nwb_linkml/src/nwb_linkml/schema'
check-hidden = true
# ignore-regex = ''
# ignore-words-list = ''

[tool.ruff]
target-version = "py311"
include = ["nwb_linkml/**/*.py", "nwb_schema_language/src/**/*.py", "pyproject.toml"]
exclude = [
    "docs",
    "nwb_linkml/src/nwb_linkml/models/**/*.py",
    "nwb_schema_language/src/nwb_schema_language/datamodel/nwb_schema_language.py",
    "nwb_schema_language/src/nwb_schema_language/datamodel/nwb_schema_pydantic.py",
    "tests/__tmp__/**/*"
    # "nwb_linkml/src/nwb_linkml/models/**/*.py"
]
line-length = 100

[tool.ruff.lint]
select = [
    # pycodestyle
    "E",
    # Pyflakes
    "F",
    # pyupgrade
    "UP",
    # flake8-bugbear
    "B",
    # flake8-simplify
    "SIM",
    # isort
    "I",
    # annotations
    "ANN",
    ## ----------
    # pydocstyle
    # undocumented public objects
    "D100", "D101", "D102", "D103", "D104", "D106",
    # indentation
    "D207", "D208", "D209",
    # whitespace
    "D210", "D211",
    # emptiness
    "D419",
    # perf
    "PERF",
    # numpy
    "NPY",
]
ignore = [
    # annotations for *args and **kwargs
    "ANN002", "ANN003",
    # annoying annotation rules
    "ANN101", "ANN102", "ANN401", "ANN204",
    # explicit strict arg for zip
    "B905",
    # builtin type annotations
    "UP006", "UP035",
    # | for Union types (only supported >=3.10
    "UP007", "UP038",
    # syntax error in forward annotation with numpydantic
    "F722"
]

fixable = ["ALL"]

[tool.ruff.lint.per-file-ignores]
"**/tests/**.py" = ["D", "ANN", "E501", "F841", "F722"]
"nwb_linkml/src/nwb_linkml/models/**/*.py" = ["ANN202", "E501", "D", "F722", "UP036", "F403"]

[tool.mypy]
plugins = [
    "pydantic.mypy"
]
packages = [
    "miniscope_io"
]
exclude = [
    '.*vendor.*'
]
follow_imports = "silent"
warn_unreachable = true

[tool.black]
target-version = ['py38', 'py39', 'py310', 'py311']
enable-unstable-feature = ["string_processing"]
preview = true
include = "nwb_linkml/.*\\.py$|nwb_schema_language/.*\\.py$"
line-length = 100