mirror of
https://github.com/p2p-ld/nwb-linkml.git
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sneakers-the-rat
eac5ef4c80
move conftest to root so we find doctests? maybe we don't want to keep that tho
96 lines
No EOL
2.3 KiB
TOML
96 lines
No EOL
2.3 KiB
TOML
[tool.poetry]
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name = "nwb-linkml"
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version = "0.1.0"
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description = "Translating NWB schema language to LinkML"
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authors = ["sneakers-the-rat <JLSaunders987@gmail.com>"]
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license = "GPL-3.0"
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readme = "README.md"
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homepage = "https://nwb-linkml.readthedocs.io"
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repository = "https://github.com/p2p-ld/nwb-linkml/"
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documentation = "https://nwb-linkml.readthedocs.io"
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packages = [
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{include = "nwb_linkml", from="src"},
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#{include = "nwb_schema_language", from="../nwb_schema_language/src"}
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]
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include = [
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'src/nwb_linkml/schema/**/*'
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]
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[tool.poetry.dependencies]
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python = ">=3.11,<3.13"
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pyyaml = "^6.0"
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linkml-runtime = "^1.6.0"
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nwb_schema_language = "^0.1.3"
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rich = "^13.5.2"
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linkml = "^1.6.1"
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nptyping = "^2.5.0"
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pydantic = "^2.3.0"
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h5py = "^3.9.0"
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pydantic-settings = "^2.0.3"
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dask = "^2023.9.2"
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blosc2 = "^2.2.7"
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tqdm = "^4.66.1"
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dash = {version="^2.12.1", optional=true}
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dash-cytoscape = {version="^0.3.0", optional=true}
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pytest = { version="^7.4.0", optional=true}
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pytest-depends = {version="^1.0.1", optional=true}
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coverage = {version = "^6.1.1", optional = true}
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pytest-md = {version = "^0.2.0", optional = true}
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pytest-cov = {version = "^4.1.0", optional = true}
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coveralls = {version = "^3.3.1", optional = true}
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pytest-profiling = {version = "^1.7.0", optional = true}
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sybil = {version = "^5.0.3", optional = true}
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[tool.poetry.extras]
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tests = [
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"pytest", "pytest-depends", "coverage", "pytest-md",
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"pytest-cov", "coveralls", "pytest-profiling", "sybil"
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]
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plot = ["dash", "dash-cytoscape"]
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[tool.poetry.group.tests]
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optional = true
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[tool.poetry.group.tests.dependencies]
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pytest = "^7.4.0"
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pytest-depends = "^1.0.1"
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coverage = "^6.1.1"
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pytest-md = "^0.2.0"
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pytest-cov = "^4.1.0"
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coveralls = "^3.3.1"
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pytest-profiling = "^1.7.0"
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sybil = "^5.0.3"
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[tool.poetry.group.plot]
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optional = true
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[tool.poetry.group.plot.dependencies]
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dash = "^2.12.1"
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dash-cytoscape = "^0.3.0"
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[build-system]
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requires = ["poetry-core"]
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build-backend = "poetry.core.masonry.api"
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[tool.pytest.ini_options]
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addopts = [
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"--cov=nwb_linkml",
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"--cov-append",
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"--cov-config=.coveragerc",
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"-p no:doctest",
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"--ignore=tests/__tmp__"
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]
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testpaths = [
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"tests",
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'nwb_linkml/tests',
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'src/nwb_linkml'
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]
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doctest_optionflags = "NORMALIZE_WHITESPACE"
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filterwarnings = [
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"ignore::DeprecationWarning",
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"ignore:parse_obj:pydantic.PydanticDeprecatedSince20"
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] |