mirror of
https://github.com/p2p-ld/nwb-linkml.git
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76 lines
1.7 KiB
YAML
76 lines
1.7 KiB
YAML
# Sketch of a condensed expression syntax for creation with nwb-linkml
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# just a sketch! keeping here for continued work but currently unused.
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---
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id: my_dataset
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prefixes:
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nwbfile:
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- path: "test_nwb.nwb"
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- hash: "blake2b:blahblahblahblah"
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imports:
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core:
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as: nwb
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version: "2.7.0"
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from:
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- pypi:
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package: nwb-models
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hdmf-common:
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as: hdmf
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version: "1.8.0"
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from:
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- pypi:
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package: nwb-models
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---
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extracellular_ephys: &ecephys
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electrodes:
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group:
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- @shank{{i}}
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- @shank{{i}}
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- @shank{{i}}
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# could have expression here like { range(3) } => i
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# - ... { range(3) } => i
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# or blank ... implies use expression from outer scope
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- ...
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shank{{i}}:
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device: @general.devices.array
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...: { range(3) } => i
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# expands to
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extracellular_ephys:
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electrodes:
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group:
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- @shank0
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- @shank0
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- @shank0
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- @shank1
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- # etc.
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shank0:
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device: @general.devices.array
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shank1:
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device: @general.devices.array
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# etc.
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data: !{{ nwb.NWBFile }} <== :nwbfile
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file_create_date: [ 2024-01-01 ]
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identifier: "1111-1111-1111-1111"
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session_description: All that you touch, you change.
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session_start_time: 2024-01-01T01:01:01
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general:
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devices:
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- Heka ITC-1600:
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- Microscope:
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- array:
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description: old reliable
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manufacturer: diy
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extracellular_ephys: *ecephys
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experiment_description: All that you change, changes you.
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experimenter: [ "Lauren Oya Olamina" ]
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institution: Earthseed Research Institute
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keywords:
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- behavior
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- belief
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related_publications: doi:10.1016/j.neuron.2016.12.011
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