mirror of
https://github.com/p2p-ld/nwb-linkml.git
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2179 lines
152 KiB
TOML
2179 lines
152 KiB
TOML
# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
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[[package]]
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name = "annotated-types"
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version = "0.5.0"
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description = "Reusable constraint types to use with typing.Annotated"
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optional = false
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python-versions = ">=3.7"
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files = [
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{file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"},
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{file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"},
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]
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[[package]]
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name = "ansi2html"
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version = "1.8.0"
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description = ""
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optional = false
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python-versions = ">=3.6"
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files = [
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{file = "ansi2html-1.8.0-py3-none-any.whl", hash = "sha256:ef9cc9682539dbe524fbf8edad9c9462a308e04bce1170c32daa8fdfd0001785"},
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{file = "ansi2html-1.8.0.tar.gz", hash = "sha256:38b82a298482a1fa2613f0f9c9beb3db72a8f832eeac58eb2e47bf32cd37f6d5"},
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]
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[package.extras]
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docs = ["Sphinx", "setuptools-scm", "sphinx-rtd-theme"]
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test = ["pytest", "pytest-cov"]
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[[package]]
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name = "antlr4-python3-runtime"
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version = "4.9.3"
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description = "ANTLR 4.9.3 runtime for Python 3.7"
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optional = false
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python-versions = "*"
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files = [
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{file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
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]
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[[package]]
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name = "arrow"
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version = "1.2.3"
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description = "Better dates & times for Python"
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optional = false
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python-versions = ">=3.6"
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files = [
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{file = "arrow-1.2.3-py3-none-any.whl", hash = "sha256:5a49ab92e3b7b71d96cd6bfcc4df14efefc9dfa96ea19045815914a6ab6b1fe2"},
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{file = "arrow-1.2.3.tar.gz", hash = "sha256:3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1"},
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]
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[package.dependencies]
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python-dateutil = ">=2.7.0"
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[[package]]
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name = "attrs"
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version = "23.1.0"
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description = "Classes Without Boilerplate"
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optional = false
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python-versions = ">=3.7"
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files = [
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{file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"},
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{file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"},
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]
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[package.extras]
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cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
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dev = ["attrs[docs,tests]", "pre-commit"]
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docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
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tests = ["attrs[tests-no-zope]", "zope-interface"]
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tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
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[[package]]
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name = "certifi"
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version = "2023.7.22"
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description = "Python package for providing Mozilla's CA Bundle."
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optional = false
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python-versions = ">=3.6"
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files = [
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{file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
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{file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
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]
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[[package]]
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name = "cfgraph"
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version = "0.2.1"
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description = "rdflib collections flattening graph"
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optional = false
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python-versions = "*"
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files = [
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{file = "CFGraph-0.2.1.tar.gz", hash = "sha256:b57fe7044a10b8ff65aa3a8a8ddc7d4cd77bf511b42e57289cd52cbc29f8fe74"},
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]
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[package.dependencies]
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rdflib = ">=0.4.2"
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[[package]]
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name = "chardet"
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version = "5.2.0"
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description = "Universal encoding detector for Python 3"
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optional = false
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python-versions = ">=3.7"
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files = [
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{file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
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{file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
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]
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[[package]]
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name = "charset-normalizer"
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version = "3.2.0"
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description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
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optional = false
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python-versions = ">=3.7.0"
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files = [
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[[package]]
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name = "click"
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version = "8.1.7"
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description = "Composable command line interface toolkit"
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optional = false
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python-versions = ">=3.7"
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files = [
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colorama = {version = "*", markers = "platform_system == \"Windows\""}
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[[package]]
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name = "colorama"
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version = "0.4.6"
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description = "Cross-platform colored terminal text."
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optional = false
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python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
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files = [
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name = "curies"
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version = "0.6.0"
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description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
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optional = false
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python-versions = ">=3.8"
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files = [
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[package.dependencies]
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pydantic = "*"
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pytrie = "*"
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requests = "*"
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[package.extras]
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docs = ["sphinx", "sphinx-automodapi", "sphinx-rtd-theme"]
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fastapi = ["defusedxml", "fastapi", "httpx", "python-multipart", "uvicorn"]
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flask = ["defusedxml", "flask"]
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pandas = ["pandas"]
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rdflib = ["rdflib"]
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tests = ["coverage", "pytest"]
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[[package]]
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name = "dash"
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version = "2.13.0"
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description = "A Python framework for building reactive web-apps. Developed by Plotly."
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optional = false
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python-versions = ">=3.6"
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files = [
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[package.dependencies]
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ansi2html = "*"
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dash-core-components = "2.0.0"
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dash-html-components = "2.0.0"
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dash-table = "5.0.0"
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Flask = ">=1.0.4,<2.3.0"
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nest-asyncio = "*"
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plotly = ">=5.0.0"
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requests = "*"
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retrying = "*"
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setuptools = "*"
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typing-extensions = ">=4.1.1"
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Werkzeug = "<2.3.0"
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[package.extras]
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celery = ["celery[redis] (>=5.1.2)", "importlib-metadata (<5)", "redis (>=3.5.3)"]
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ci = ["black (==21.6b0)", "black (==22.3.0)", "dash-dangerously-set-inner-html", "dash-flow-example (==0.0.5)", "flake8 (==3.9.2)", "flaky (==3.7.0)", "flask-talisman (==1.0.0)", "isort (==4.3.21)", "jupyterlab (<4.0.0)", "mimesis", "mock (==4.0.3)", "numpy", "openpyxl", "orjson (==3.5.4)", "orjson (==3.6.7)", "pandas (==1.1.5)", "pandas (>=1.4.0)", "preconditions", "pyarrow", "pyarrow (<3)", "pylint (==2.13.5)", "pytest-mock", "pytest-rerunfailures", "pytest-sugar (==0.9.6)", "xlrd (<2)", "xlrd (>=2.0.1)"]
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compress = ["flask-compress"]
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dev = ["PyYAML (>=5.4.1)", "coloredlogs (>=15.0.1)", "fire (>=0.4.0)"]
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diskcache = ["diskcache (>=5.2.1)", "multiprocess (>=0.70.12)", "psutil (>=5.8.0)"]
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testing = ["beautifulsoup4 (>=4.8.2)", "cryptography (<3.4)", "dash-testing-stub (>=0.0.2)", "lxml (>=4.6.2)", "multiprocess (>=0.70.12)", "percy (>=2.0.2)", "psutil (>=5.8.0)", "pytest (>=6.0.2)", "requests[security] (>=2.21.0)", "selenium (>=3.141.0,<=4.2.0)", "waitress (>=1.4.4)"]
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[[package]]
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name = "dash-core-components"
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version = "2.0.0"
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description = "Core component suite for Dash"
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optional = false
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python-versions = "*"
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files = [
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name = "dash-cytoscape"
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version = "0.3.0"
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description = "A Component Library for Dash aimed at facilitating network visualization in Python, wrapped around Cytoscape.js"
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optional = false
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[package.dependencies]
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dash = "*"
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[[package]]
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name = "dash-html-components"
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version = "2.0.0"
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description = "Vanilla HTML components for Dash"
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optional = false
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python-versions = "*"
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files = [
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name = "dash-table"
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version = "5.0.0"
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description = "Dash table"
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optional = false
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python-versions = "*"
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name = "decorator"
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description = "Decorators for Humans"
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name = "deprecated"
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click = ">=8.0"
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itsdangerous = ">=2.0"
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async = ["asgiref (>=3.2)"]
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name = "fqdn"
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description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
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optional = false
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{file = "jsonpatch-1.33.tar.gz", hash = "sha256:9fcd4009c41e6d12348b4a0ff2563ba56a2923a7dfee731d004e212e1ee5030c"},
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]
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[package.dependencies]
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jsonpointer = ">=1.9"
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[[package]]
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|
name = "jsonpath-ng"
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|
version = "1.5.3"
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|
description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
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|
optional = false
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python-versions = "*"
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files = [
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]
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[package.dependencies]
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|
decorator = "*"
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|
ply = "*"
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|
six = "*"
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[[package]]
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|
name = "jsonpointer"
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|
version = "2.4"
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|
description = "Identify specific nodes in a JSON document (RFC 6901)"
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|
optional = false
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|
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
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files = [
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{file = "jsonpointer-2.4.tar.gz", hash = "sha256:585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88"},
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[[package]]
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|
name = "jsonschema"
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|
version = "4.19.0"
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|
description = "An implementation of JSON Schema validation for Python"
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|
optional = false
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|
python-versions = ">=3.8"
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files = [
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{file = "jsonschema-4.19.0.tar.gz", hash = "sha256:6e1e7569ac13be8139b2dd2c21a55d350066ee3f80df06c608b398cdc6f30e8f"},
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]
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[package.dependencies]
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attrs = ">=22.2.0"
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fqdn = {version = "*", optional = true, markers = "extra == \"format\""}
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|
idna = {version = "*", optional = true, markers = "extra == \"format\""}
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|
isoduration = {version = "*", optional = true, markers = "extra == \"format\""}
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|
jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format\""}
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|
jsonschema-specifications = ">=2023.03.6"
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|
referencing = ">=0.28.4"
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rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format\""}
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|
rfc3987 = {version = "*", optional = true, markers = "extra == \"format\""}
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|
rpds-py = ">=0.7.1"
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|
uri-template = {version = "*", optional = true, markers = "extra == \"format\""}
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|
webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format\""}
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[package.extras]
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|
format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
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|
format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
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[[package]]
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|
name = "jsonschema-specifications"
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|
version = "2023.7.1"
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|
description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
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|
optional = false
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python-versions = ">=3.8"
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files = [
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[package.dependencies]
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referencing = ">=0.28.0"
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[[package]]
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|
name = "linkml"
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|
version = "1.5.7"
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|
description = "Linked Open Data Modeling Language"
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|
optional = false
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python-versions = ">=3.7.6,<4.0.0"
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files = [
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[package.dependencies]
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antlr4-python3-runtime = ">=4.9.0,<4.10"
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click = ">=7.0"
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graphviz = ">=0.10.1"
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hbreader = "*"
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isodate = ">=0.6.0"
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jinja2 = ">=3.1.0"
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jsonasobj2 = ">=1.0.3,<2.0.0"
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jsonschema = {version = ">=4.0.0", extras = ["format"]}
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linkml-dataops = "*"
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linkml-runtime = ">=1.5.4"
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openpyxl = "*"
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parse = "*"
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prefixcommons = ">=0.1.7"
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prefixmaps = ">=0.1.3"
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pydantic = "*"
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pyjsg = ">=0.11.6"
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pyshex = ">=0.7.20"
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pyshexc = ">=0.8.3"
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python-dateutil = "*"
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pyyaml = "*"
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rdflib = ">=6.0.0"
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requests = ">=2.22"
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sqlalchemy = ">=1.4.31"
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watchdog = ">=0.9.0"
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[[package]]
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|
name = "linkml-dataops"
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version = "0.1.0"
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|
description = "LinkML Data Operations API"
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optional = false
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python-versions = ">=3.7"
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files = [
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[package.dependencies]
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jinja2 = "*"
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jsonpatch = "*"
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jsonpath-ng = "*"
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linkml-runtime = ">=1.1.6"
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"ruamel.yaml" = "*"
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[[package]]
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|
name = "linkml-runtime"
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version = "1.5.6"
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description = "Runtime environment for LinkML, the Linked open data modeling language"
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optional = false
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python-versions = ">=3.7.6,<4.0.0"
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files = [
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[package.dependencies]
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click = "*"
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curies = ">=0.5.4"
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deprecated = "*"
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hbreader = "*"
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json-flattener = ">=0.1.9"
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jsonasobj2 = ">=1.0.4,<2.dev0"
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pydantic = ">=1.10.2,<3.0.0"
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pyyaml = "*"
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rdflib = ">=6.0.0"
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requests = "*"
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[[package]]
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name = "markdown-it-py"
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version = "3.0.0"
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description = "Python port of markdown-it. Markdown parsing, done right!"
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optional = false
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python-versions = ">=3.8"
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[package.dependencies]
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mdurl = ">=0.1,<1.0"
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[package.extras]
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benchmarking = ["psutil", "pytest", "pytest-benchmark"]
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code-style = ["pre-commit (>=3.0,<4.0)"]
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compare = ["commonmark (>=0.9,<1.0)", "markdown (>=3.4,<4.0)", "mistletoe (>=1.0,<2.0)", "mistune (>=2.0,<3.0)", "panflute (>=2.3,<3.0)"]
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linkify = ["linkify-it-py (>=1,<3)"]
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plugins = ["mdit-py-plugins"]
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profiling = ["gprof2dot"]
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rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
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testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
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[[package]]
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name = "markupsafe"
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description = "Safely add untrusted strings to HTML/XML markup."
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[[package]]
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name = "zipp"
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version = "3.16.2"
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description = "Backport of pathlib-compatible object wrapper for zip files"
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optional = false
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python-versions = ">=3.8"
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files = [
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{file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
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]
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[package.extras]
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docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
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testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
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[extras]
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dev = []
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plot = ["dash", "dash-cytoscape"]
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tests = ["pytest", "pytest-depends"]
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[metadata]
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lock-version = "2.0"
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python-versions = "^3.11"
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content-hash = "b2c008f0aadb604723b4e4387f59bf189691c2e2552cd86ed77990f08a3e626c"
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