nwb-linkml/nwb_linkml/tests/test_maps/test_hdmf.py

24 lines
616 B
Python

import time
import h5py
import pytest
from nwb_linkml.maps.hdmf import dynamictable_to_model, model_from_dynamictable
NWBFILE = "/Users/jonny/Dropbox/lab/p2p_ld/data/nwb/sub-738651046_ses-760693773.nwb"
@pytest.mark.parametrize("dataset", ["aibs.nwb"])
def test_make_dynamictable(data_dir, dataset):
nwbfile = data_dir / dataset
h5f = h5py.File(nwbfile, "r")
group = h5f["units"]
start_time = time.time()
model = model_from_dynamictable(group)
data = dynamictable_to_model(group, model)
_ = data.model_dump_json()
end_time = time.time()
total_time = end_time - start_time