mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-11-14 02:34:28 +00:00
83 lines
2 KiB
TOML
83 lines
2 KiB
TOML
[project]
|
|
name = "nwb-linkml"
|
|
description = "Translating NWB schema language to LinkML"
|
|
version = "0.2.0"
|
|
authors = [
|
|
{name = "sneakers-the-rat", email = "sneakers-the-rat@protonmail.me"},
|
|
]
|
|
license = {text = "AGPL-3.0"}
|
|
readme = "README.md"
|
|
requires-python = "<3.13,>=3.10"
|
|
dependencies = [
|
|
"pyyaml>=6.0",
|
|
"linkml-runtime>=1.7.7",
|
|
"nwb-schema-language>=0.1.3",
|
|
"rich>=13.5.2",
|
|
#"linkml>=1.7.10",
|
|
"linkml @ git+https://github.com/sneakers-the-rat/linkml@arrays-numpydantic",
|
|
"nptyping>=2.5.0",
|
|
"pydantic>=2.3.0",
|
|
"h5py>=3.9.0",
|
|
"pydantic-settings>=2.0.3",
|
|
"dask>=2023.9.2",
|
|
"tqdm>=4.66.1",
|
|
'typing-extensions>=4.12.2;python_version<"3.11"',
|
|
"numpydantic>=1.2.1",
|
|
"black>=24.4.2",
|
|
]
|
|
|
|
[project.urls]
|
|
homepage = "https://nwb-linkml.readthedocs.io"
|
|
repository = "https://github.com/p2p-ld/nwb-linkml/"
|
|
documentation = "https://nwb-linkml.readthedocs.io"
|
|
|
|
[project.optional-dependencies]
|
|
plot = [
|
|
"dash<3.0.0,>=2.12.1",
|
|
"dash-cytoscape<1.0.0,>=0.3.0",
|
|
]
|
|
tests = [
|
|
"nwb-linkml[plot]",
|
|
"pytest<8.0.0,>=7.4.0",
|
|
"pytest-depends<2.0.0,>=1.0.1",
|
|
"coverage<7.0.0,>=6.1.1",
|
|
"pytest-md<1.0.0,>=0.2.0",
|
|
"pytest-cov<5.0.0,>=4.1.0",
|
|
"coveralls<4.0.0,>=3.3.1",
|
|
"pytest-profiling<2.0.0,>=1.7.0",
|
|
"sybil<6.0.0,>=5.0.3",
|
|
"requests-cache>=1.2.1",
|
|
]
|
|
dev = [
|
|
"nwb-linkml[tests]",
|
|
"ruff>=0.5.0",
|
|
"black>=24.4.2",
|
|
]
|
|
|
|
[tool.pdm]
|
|
distribution = true
|
|
|
|
[tool.pdm.build]
|
|
includes = ["src/nwb_linkml", "src/nwb_linkml/schema/**/*"]
|
|
[build-system]
|
|
requires = ["pdm-backend"]
|
|
build-backend = "pdm.backend"
|
|
|
|
[tool.pytest.ini_options]
|
|
addopts = [
|
|
"--cov=nwb_linkml",
|
|
"--cov-append",
|
|
"--cov-config=.coveragerc",
|
|
"-p no:doctest",
|
|
"--ignore=tests/__tmp__",
|
|
"--ignore=src/nwb_linkml/models",
|
|
"--ignore=src/nwb_linkml/schema"
|
|
]
|
|
testpaths = [
|
|
"src/nwb_linkml",
|
|
"tests",
|
|
]
|
|
filterwarnings = [
|
|
"ignore::DeprecationWarning",
|
|
"ignore:parse_obj:pydantic.PydanticDeprecatedSince20"
|
|
]
|