mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-09-20 07:54:29 +00:00
sneakers-the-rat
fd9aef9531
- split off generated subclasses into "include" files, not sure if that's good, but in any case we have them separable now. - more work on cleanly un-nesting scalar and 1D-vector data into attributes and lists, respectively - brought the pydantic generator in-repo to do a bunch of overrides
625 lines
No EOL
21 KiB
JSON
625 lines
No EOL
21 KiB
JSON
{
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"$defs": {
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"AnyType": {
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"additionalProperties": true,
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"description": "",
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"title": "AnyType",
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"type": "object"
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},
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"Attribute": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"default_value": {
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"$ref": "#/$defs/AnyType",
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"description": "Optional default value for variable-valued attributes."
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},
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"dims": {
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"items": {
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"anyOf": [
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{
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"type": "string"
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},
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{
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"$ref": "#/$defs/AnyType"
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}
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],
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"type": "string"
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},
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"type": "array"
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},
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"doc": {
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"description": "Description of corresponding object.",
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"type": "string"
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},
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"dtype": {
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"items": {
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"anyOf": [
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{
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"$ref": "#/$defs/FlatDtype"
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},
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{
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"$ref": "#/$defs/CompoundDtype"
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},
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{
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"$ref": "#/$defs/ReferenceDtype"
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}
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],
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"type": "string"
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},
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"type": "array"
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},
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"name": {
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"type": "string"
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},
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"required": {
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"description": "Optional boolean key describing whether the attribute is required. Default value is True.",
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"type": "boolean"
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},
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"shape": {
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"items": {
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"anyOf": [
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{
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"minimum": 1,
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"type": "integer"
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},
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{
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"const": "null",
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"type": "string"
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},
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{
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"$ref": "#/$defs/AnyType"
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}
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],
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"type": "string"
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},
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"type": "array"
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},
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"value": {
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"$ref": "#/$defs/AnyType",
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"description": "Optional constant, fixed value for the attribute."
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}
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},
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"required": [
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"name",
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"doc"
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],
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"title": "Attribute",
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"type": "object"
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},
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"CompoundDtype": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"doc": {
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"description": "Description of corresponding object.",
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"type": "string"
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},
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"dtype": {
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"anyOf": [
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{
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"$ref": "#/$defs/ReferenceDtype"
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},
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{
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"$ref": "#/$defs/FlatDtype"
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}
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],
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"type": "string"
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},
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"name": {
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"type": "string"
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}
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},
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"required": [
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"name",
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"doc",
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"dtype"
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],
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"title": "CompoundDtype",
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"type": "object"
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},
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"Dataset": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"attributes": {
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"items": {
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"$ref": "#/$defs/Attribute"
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},
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"type": "array"
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},
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"default_name": {
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"type": "string"
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},
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"default_value": {
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"$ref": "#/$defs/AnyType",
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"description": "Optional default value for variable-valued attributes."
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},
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"dims": {
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"items": {
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"anyOf": [
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{
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"type": "string"
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},
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{
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"$ref": "#/$defs/AnyType"
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}
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],
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"type": "string"
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},
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"type": "array"
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},
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"doc": {
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"description": "Description of corresponding object.",
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"type": "string"
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},
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"dtype": {
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"items": {
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"anyOf": [
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{
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"$ref": "#/$defs/FlatDtype"
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},
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{
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"$ref": "#/$defs/CompoundDtype"
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},
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{
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"$ref": "#/$defs/ReferenceDtype"
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}
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],
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"type": "string"
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},
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"type": "array"
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},
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"linkable": {
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"type": "boolean"
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},
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"name": {
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"type": "string"
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},
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"neurodata_type_def": {
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"description": "Used alongside neurodata_type_inc to indicate inheritance, naming, and mixins",
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"type": "string"
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},
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"neurodata_type_inc": {
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"description": "Used alongside neurodata_type_def to indicate inheritance, naming, and mixins",
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"type": "string"
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},
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"quantity": {
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"anyOf": [
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{
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"minimum": 1,
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"type": "integer"
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},
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{
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"$ref": "#/$defs/QuantityEnum"
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}
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],
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"type": "string"
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},
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"shape": {
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"items": {
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"anyOf": [
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{
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"minimum": 1,
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"type": "integer"
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},
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{
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"const": "null",
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"type": "string"
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},
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{
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"$ref": "#/$defs/AnyType"
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}
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],
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"type": "string"
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},
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"type": "array"
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},
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"value": {
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"$ref": "#/$defs/AnyType",
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"description": "Optional constant, fixed value for the attribute."
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}
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},
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"required": [
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"doc"
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],
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"title": "Dataset",
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"type": "object"
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},
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"Datasets": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"datasets": {
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"items": {
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"$ref": "#/$defs/Dataset"
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},
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"type": "array"
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}
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},
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"title": "Datasets",
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"type": "object"
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},
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"FlatDtype": {
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"description": "",
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"enum": [
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"float",
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"float32",
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"double",
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"float64",
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"long",
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"int64",
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"int",
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"int32",
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"int16",
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"short",
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"int8",
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"uint",
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"uint32",
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"uint16",
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"uint8",
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"uint64",
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"numeric",
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"text",
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"utf",
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"utf8",
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"utf-8",
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"ascii",
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"bool",
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"isodatetime"
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],
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"title": "FlatDtype",
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"type": "string"
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},
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"Group": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"attributes": {
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"items": {
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"$ref": "#/$defs/Attribute"
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},
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"type": "array"
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},
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"datasets": {
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"items": {
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"$ref": "#/$defs/Dataset"
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},
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"type": "array"
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},
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"default_name": {
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"type": "string"
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},
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"doc": {
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"description": "Description of corresponding object.",
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"type": "string"
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},
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"groups": {
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"items": {
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"$ref": "#/$defs/Group"
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},
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"type": "array"
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},
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"linkable": {
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"type": "boolean"
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},
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"links": {
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"items": {
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"$ref": "#/$defs/Link"
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},
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"type": "array"
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},
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"name": {
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"type": "string"
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},
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"neurodata_type_def": {
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"description": "Used alongside neurodata_type_inc to indicate inheritance, naming, and mixins",
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"type": "string"
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},
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"neurodata_type_inc": {
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"description": "Used alongside neurodata_type_def to indicate inheritance, naming, and mixins",
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"type": "string"
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},
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"quantity": {
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"anyOf": [
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{
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"minimum": 1,
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"type": "integer"
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},
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{
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"$ref": "#/$defs/QuantityEnum"
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}
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],
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"type": "string"
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}
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},
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"required": [
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"doc"
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],
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"title": "Group",
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"type": "object"
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},
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"Groups": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"groups": {
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"items": {
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"$ref": "#/$defs/Group"
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},
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"type": "array"
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}
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},
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"title": "Groups",
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"type": "object"
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},
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"Link": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"doc": {
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"description": "Description of corresponding object.",
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"type": "string"
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},
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"name": {
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"type": "string"
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},
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"quantity": {
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"anyOf": [
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{
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"minimum": 1,
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"type": "integer"
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},
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{
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"$ref": "#/$defs/QuantityEnum"
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}
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],
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"type": "string"
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},
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"target_type": {
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"description": "Describes the neurodata_type of the target that the reference points to",
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"type": "string"
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}
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},
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"required": [
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"doc",
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"target_type"
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],
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"title": "Link",
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"type": "object"
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},
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"Namespace": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"author": {
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"description": "List of strings with the names of the authors of the namespace.",
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"items": {
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"type": "string"
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},
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"type": "array"
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},
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"contact": {
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"description": "List of strings with the contact information for the authors. Ordering of the contacts should match the ordering of the authors.",
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"items": {
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"type": "string"
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},
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"type": "array"
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},
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"date": {
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"description": "Date that a namespace was last modified or released",
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"format": "date",
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"type": "string"
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},
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"doc": {
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"description": "Description of corresponding object.",
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"type": "string"
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},
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"full_name": {
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"description": "Optional string with extended full name for the namespace.",
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"type": "string"
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},
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"name": {
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"type": "string"
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},
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"schema_": {
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"description": "List of the schema to be included in this namespace.",
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"items": {
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"$ref": "#/$defs/Schema"
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},
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"type": "array"
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},
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"version": {
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"pattern": "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$",
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"type": "string"
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}
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},
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"required": [
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"doc",
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"name",
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"version",
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"author",
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"contact"
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],
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"title": "Namespace",
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"type": "object"
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},
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"Namespaces": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"namespaces": {
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"items": {
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"$ref": "#/$defs/Namespace"
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},
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"type": "array"
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}
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},
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"title": "Namespaces",
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"type": "object"
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},
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"QuantityEnum": {
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"description": "",
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"enum": [
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"*",
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"?",
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"+",
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"zero_or_many",
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"one_or_many",
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"zero_or_one"
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],
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"title": "QuantityEnum",
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"type": "string"
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},
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"ReferenceDtype": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"reftype": {
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"$ref": "#/$defs/ReftypeOptions",
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"description": "describes the kind of reference"
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},
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"target_type": {
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"description": "Describes the neurodata_type of the target that the reference points to",
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"type": "string"
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}
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},
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"required": [
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"target_type"
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],
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"title": "ReferenceDtype",
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"type": "object"
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},
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"ReftypeOptions": {
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"description": "",
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"enum": [
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"ref",
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"reference",
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"object",
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"region"
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],
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"title": "ReftypeOptions",
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"type": "string"
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},
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"Schema": {
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"additionalProperties": false,
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"allOf": [
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{
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"if": {
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"properties": {
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"namespace": {}
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},
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"required": [
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"namespace"
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]
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},
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"then": {
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"properties": {
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"source": {}
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},
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"required": [
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"source"
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]
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}
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},
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{
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"if": {
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"properties": {
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"source": {}
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},
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"required": [
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"source"
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]
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},
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"then": {
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"properties": {
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"namespace": {}
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},
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"required": [
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"namespace"
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]
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}
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},
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{
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"if": {
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"properties": {
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"namespace": {}
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},
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"required": [
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"namespace"
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]
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},
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"then": {
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"properties": {
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"source": {}
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},
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"required": [
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"source"
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]
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}
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},
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{
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"if": {
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"properties": {
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"source": {}
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},
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"required": [
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"source"
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]
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},
|
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"then": {
|
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"properties": {
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"namespace": {}
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},
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"required": [
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"namespace"
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]
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}
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}
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],
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"description": "",
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"properties": {
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"doc": {
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"type": "string"
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},
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"namespace": {
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"description": "describes a named reference to another namespace. In contrast to source, this is a reference by name to a known namespace (i.e., the namespace is resolved during the build and must point to an already existing namespace). This mechanism is used to allow, e.g., extension of a core namespace (here the NWB core namespace) without requiring hard paths to the files describing the core namespace. Either source or namespace must be specified, but not both.",
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"type": "string"
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},
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"neurodata_types": {
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"description": "an optional list of strings indicating which data types should be included from the given specification source or namespace. The default is null indicating that all data types should be included.",
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"items": {
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"anyOf": [
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{
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"$ref": "#/$defs/Dataset"
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},
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{
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"$ref": "#/$defs/Group"
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}
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],
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"type": "string"
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},
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"type": "array"
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},
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"source": {
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"description": "describes the name of the YAML (or JSON) file with the schema specification. The schema files should be located in the same folder as the namespace file.",
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"pattern": ".*\\.(yml|yaml|json)",
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"type": "string"
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},
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"title": {
|
|
"description": "a descriptive title for a file for documentation purposes.",
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"type": "string"
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}
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},
|
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"title": "Schema",
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|
"type": "object"
|
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}
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},
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"$id": "https://w3id.org/p2p_ld/nwb-schema-language",
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"$schema": "http://json-schema.org/draft-07/schema#",
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|
"additionalProperties": true,
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"metamodel_version": "1.7.0",
|
|
"title": "nwb-schema-language",
|
|
"type": "object",
|
|
"version": null
|
|
} |