mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-09-19 23:44:28 +00:00
93 lines
2.7 KiB
Python
93 lines
2.7 KiB
Python
import pytest
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import shutil
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import yaml
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from nwb_linkml.providers.git import GitRepo, NWB_CORE_REPO, HDMF_COMMON_REPO
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from nwb_schema_language import Namespaces
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@pytest.mark.parametrize(
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['source', 'commit'],
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[
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(NWB_CORE_REPO, 'b4f8838cbfbb7f8a117bd7e0aad19133d26868b4'),
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(HDMF_COMMON_REPO, '660b6ac0780dd9d2cb1e56fea8b62c671ca5e2c8')
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]
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)
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def test_gitrepo(source, commit):
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"""
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Basic functionality of GitRepo
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"""
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repo = GitRepo(source)
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# make a temp directory that exists
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first_dir = repo.temp_directory
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assert repo.temp_directory.exists()
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# find the same repository when it's deleted
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shutil.rmtree(str(repo.temp_directory))
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repo._temp_directory = None
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second_dir = repo.temp_directory
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assert first_dir == second_dir
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# successfully clone the repository after its deleted
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assert not any(repo.temp_directory.iterdir())
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repo.clone()
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# check that the namespace file exists and has some expected fields
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assert repo.namespace_file.exists()
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with open(repo.namespace_file, 'r') as nsfile:
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ns = yaml.safe_load(nsfile)
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# correct model instantiation confirms the repo was cloned successfully
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ns_model = Namespaces(**ns)
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# setting commit should change the active commit
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prior_commit = repo.active_commit
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repo.commit = commit
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assert prior_commit != repo.active_commit
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assert repo.active_commit == commit
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assert repo.commit == commit
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# remote is gotten correctly
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assert repo.remote == str(source.repository)
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# cleanup should remove files
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repo.cleanup()
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assert not any(repo.temp_directory.iterdir())
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@pytest.mark.parametrize(
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['source', 'commit'],
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[
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(NWB_CORE_REPO, 'b4f8838cbfbb7f8a117bd7e0aad19133d26868b4')
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]
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)
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def test_gitrepo_check(source, commit):
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"""
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Our check method should flag common problems with the repo
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"""
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repo = GitRepo(NWB_CORE_REPO, commit=commit)
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# cleanup is tested separately
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repo.cleanup()
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# check should fail without warning when the repo is empty
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assert not repo.check()
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repo.clone()
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assert repo.check()
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# check should fail when repo is at wrong commit
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assert repo.active_commit == commit
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repo._git_call('checkout', 'HEAD~10')
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with pytest.warns(UserWarning, match=".*wrong commit.*"):
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assert not repo.check()
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repo.commit = commit
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assert repo.active_commit == commit
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assert repo.check()
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# check should fail on repo namespace mismatch
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old_repo = repo.namespace.repository
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repo.namespace.repository = "https://example.com/a/git/repository"
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with pytest.warns(UserWarning, match='.*wrong remote.*'):
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assert not repo.check()
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repo.namespace.repository = old_repo
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assert repo.check()
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