mirror of
https://github.com/p2p-ld/nwb-linkml.git
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sneakers-the-rat
be21325123
- split off generated subclasses into "include" files, not sure if that's good, but in any case we have them separable now. - more work on cleanly un-nesting scalar and 1D-vector data into attributes and lists, respectively - brought the pydantic generator in-repo to do a bunch of overrides
77 lines
3.2 KiB
YAML
77 lines
3.2 KiB
YAML
name: core.nwb.retinotopy
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id: core.nwb.retinotopy
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imports:
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- core.nwb.base
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- nwb.language
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- core.nwb.retinotopy.include
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- core.nwb.retinotopy
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default_prefix: core.nwb.retinotopy/
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classes:
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ImagingRetinotopy:
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name: ImagingRetinotopy
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description: 'Intrinsic signal optical imaging or widefield imaging for measuring
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retinotopy. Stores orthogonal maps (e.g., altitude/azimuth; radius/theta) of
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responses to specific stimuli and a combined polarity map from which to identify
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visual areas. This group does not store the raw responses imaged during retinotopic
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mapping or the stimuli presented, but rather the resulting phase and power maps
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after applying a Fourier transform on the averaged responses. Note: for data
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consistency, all images and arrays are stored in the format [row][column] and
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[row, col], which equates to [y][x]. Field of view and dimension arrays may
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appear backward (i.e., y before x).'
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is_a: NWBDataInterface
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attributes:
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axis_1_phase_map:
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name: axis_1_phase_map
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description: Phase response to stimulus on the first measured axis.
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multivalued: false
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range: ImagingRetinotopy__axis_1_phase_map
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required: true
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axis_1_power_map:
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name: axis_1_power_map
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description: Power response on the first measured axis. Response is scaled
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so 0.0 is no power in the response and 1.0 is maximum relative power.
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multivalued: false
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range: ImagingRetinotopy__axis_1_power_map
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required: false
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axis_2_phase_map:
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name: axis_2_phase_map
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description: Phase response to stimulus on the second measured axis.
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multivalued: false
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range: ImagingRetinotopy__axis_2_phase_map
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required: true
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axis_2_power_map:
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name: axis_2_power_map
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description: Power response on the second measured axis. Response is scaled
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so 0.0 is no power in the response and 1.0 is maximum relative power.
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multivalued: false
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range: ImagingRetinotopy__axis_2_power_map
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required: false
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axis_descriptions:
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name: axis_descriptions
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description: Two-element array describing the contents of the two response
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axis fields. Description should be something like ['altitude', 'azimuth']
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or '['radius', 'theta'].
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multivalued: false
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range: ImagingRetinotopy__axis_descriptions
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required: true
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focal_depth_image:
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name: focal_depth_image
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description: 'Gray-scale image taken with same settings/parameters (e.g.,
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focal depth, wavelength) as data collection. Array format: [rows][columns].'
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multivalued: false
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range: ImagingRetinotopy__focal_depth_image
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required: false
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sign_map:
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name: sign_map
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description: Sine of the angle between the direction of the gradient in axis_1
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and axis_2.
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multivalued: false
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range: ImagingRetinotopy__sign_map
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required: false
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vasculature_image:
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name: vasculature_image
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description: 'Gray-scale anatomical image of cortical surface. Array structure:
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[rows][columns]'
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multivalued: false
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range: ImagingRetinotopy__vasculature_image
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required: true
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