mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-09-19 23:44:28 +00:00
sneakers-the-rat
4faaa8efe8
or at least all the semantics are present. it's not pretty by any stretch of the imagination
62 lines
1.7 KiB
Python
62 lines
1.7 KiB
Python
from argparse import ArgumentParser
|
|
from pathlib import Path
|
|
from linkml_runtime.dumpers import yaml_dumper
|
|
from linkml.generators import PydanticGenerator
|
|
|
|
from nwb_linkml import io
|
|
|
|
def generate_core_yaml(output_path:Path):
|
|
core = io.load_nwb_core()
|
|
built_schemas = core.build().schemas
|
|
for schema in built_schemas:
|
|
output_file = output_path / (schema.name + '.yaml')
|
|
yaml_dumper.dump(schema, output_file)
|
|
|
|
def generate_core_pydantic(yaml_path:Path, output_path:Path):
|
|
for schema in yaml_path.glob('*.yaml'):
|
|
pydantic_file = (output_path / schema.name).with_suffix('.py')
|
|
|
|
generator = PydanticGenerator(
|
|
str(schema),
|
|
pydantic_version='1',
|
|
emit_metadata=True,
|
|
gen_classvars=True,
|
|
gen_slots=True
|
|
)
|
|
gen_pydantic = generator.serialize()
|
|
with open(pydantic_file, 'w') as pfile:
|
|
pfile.write(gen_pydantic)
|
|
|
|
def parser() -> ArgumentParser:
|
|
parser = ArgumentParser('Generate NWB core schema')
|
|
parser.add_argument(
|
|
'--yaml',
|
|
help="directory to export linkML schema to",
|
|
type=Path,
|
|
default=Path(__file__).parent.parent / 'nwb_linkml' / 'schema'
|
|
)
|
|
parser.add_argument(
|
|
'--pydantic',
|
|
help="directory to export pydantic models",
|
|
type=Path,
|
|
default=Path(__file__).parent.parent / 'nwb_linkml' / 'models'
|
|
)
|
|
return parser
|
|
|
|
|
|
def main():
|
|
args = parser().parse_args()
|
|
args.yaml.mkdir(exist_ok=True)
|
|
args.pydantic.mkdir(exist_ok=True)
|
|
generate_core_yaml(args.yaml)
|
|
generate_core_pydantic(args.yaml, args.pydantic)
|
|
|
|
if __name__ == "__main__":
|
|
main()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|