mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-11-10 00:34:29 +00:00
83 lines
2 KiB
TOML
83 lines
2 KiB
TOML
[project]
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name = "nwb-linkml"
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description = "Translating NWB schema language to LinkML"
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version = "0.2.0"
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authors = [
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{name = "sneakers-the-rat", email = "sneakers-the-rat@protonmail.me"},
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]
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license = {text = "AGPL-3.0"}
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readme = "README.md"
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requires-python = "<3.13,>=3.10"
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dependencies = [
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"pyyaml>=6.0",
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"linkml-runtime>=1.7.7",
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"nwb-schema-language>=0.1.3",
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"rich>=13.5.2",
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#"linkml>=1.7.10",
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"linkml @ git+https://github.com/sneakers-the-rat/linkml@arrays-numpydantic",
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"nptyping>=2.5.0",
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"pydantic>=2.3.0",
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"h5py>=3.9.0",
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"pydantic-settings>=2.0.3",
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"dask>=2023.9.2",
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"blosc2>=2.2.7",
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"tqdm>=4.66.1",
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'typing-extensions>=4.12.2;python_version<"3.11"',
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"numpydantic>=1.2.1",
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]
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[project.urls]
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homepage = "https://nwb-linkml.readthedocs.io"
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repository = "https://github.com/p2p-ld/nwb-linkml/"
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documentation = "https://nwb-linkml.readthedocs.io"
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[project.optional-dependencies]
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plot = [
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"dash<3.0.0,>=2.12.1",
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"dash-cytoscape<1.0.0,>=0.3.0",
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]
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tests = [
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"nwb-linkml[plot]",
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"pytest<8.0.0,>=7.4.0",
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"pytest-depends<2.0.0,>=1.0.1",
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"coverage<7.0.0,>=6.1.1",
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"pytest-md<1.0.0,>=0.2.0",
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"pytest-cov<5.0.0,>=4.1.0",
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"coveralls<4.0.0,>=3.3.1",
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"pytest-profiling<2.0.0,>=1.7.0",
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"sybil<6.0.0,>=5.0.3",
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"requests-cache>=1.2.1",
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]
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dev = [
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"nwb-linkml[tests]",
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"ruff>=0.5.0",
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"black>=24.4.2",
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]
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[tool.pdm]
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distribution = true
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[tool.pdm.build]
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includes = ["src/nwb_linkml", "src/nwb_linkml/schema/**/*"]
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[build-system]
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requires = ["pdm-backend"]
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build-backend = "pdm.backend"
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[tool.pytest.ini_options]
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addopts = [
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"--cov=nwb_linkml",
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"--cov-append",
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"--cov-config=.coveragerc",
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"-p no:doctest",
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"--ignore=tests/__tmp__",
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"--ignore=src/nwb_linkml/models",
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"--ignore=src/nwb_linkml/schema"
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]
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testpaths = [
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"src/nwb_linkml",
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"tests",
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]
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filterwarnings = [
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"ignore::DeprecationWarning",
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"ignore:parse_obj:pydantic.PydanticDeprecatedSince20"
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]
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