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37 lines
1.1 KiB
Python
37 lines
1.1 KiB
Python
from typing import Tuple, TYPE_CHECKING
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from types import ModuleType
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import numpy as np
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import pytest
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# FIXME: Make this just be the output of the provider by patching into import machinery
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from nwb_linkml.models.pydantic.core.v2_7_0.namespace import (
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ElectricalSeries,
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ElectrodeGroup,
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NWBFileGeneralExtracellularEphysElectrodes,
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)
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@pytest.fixture()
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def electrical_series() -> Tuple["ElectricalSeries", "NWBFileGeneralExtracellularEphysElectrodes"]:
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"""
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Demo electrical series with adjoining electrodes
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"""
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n_electrodes = 5
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n_times = 100
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data = np.arange(0, n_electrodes * n_times).reshape(n_times, n_electrodes)
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timestamps = np.linspace(0, 1, n_times)
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# electrode group is the physical description of the electrodes
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electrode_group = ElectrodeGroup(
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name="GroupA",
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)
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# make electrodes tables
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electrodes = NWBFileGeneralExtracellularEphysElectrodes(
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id=np.arange(0, n_electrodes),
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x=np.arange(0, n_electrodes),
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y=np.arange(n_electrodes, n_electrodes * 2),
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group=[electrode_group]*n_electrodes,
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)
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