numpydantic/docs/interfaces.md

144 lines
4.2 KiB
Markdown
Raw Permalink Normal View History

# Interfaces
2024-05-23 07:27:00 +00:00
Interfaces are the bridge between the abstract {class}`~numpydantic.NDArray` specification
and concrete array libraries. They are subclasses of the abstract {class}`.Interface`
class.
They contain methods for coercion, validation, serialization, and any other
implementation-specific functionality.
## Discovery
Interfaces are discovered through the {meth}`.Interface.interfaces` method -
returning all subclasses of `Interface`. To use a custom interface, it just
needs to be defined/imported by the time you intend to use it when instantiating
a pydantic model.
Each interface implements a {meth}`.Interface.enabled` method that determines
whether that interface can be used. Typically that means checking if its dependencies
are present in the environment, but can also control conditional use.
## Matching
When a pydantic model is instantiated and an `NDArray` is to be validated,
{meth}`.Interface.match` first, uh, finds the matching interface.
Each interface must define a {meth}`.Interface.check` class that accepts the
array to be validated and returns whether it can be used. Interfaces can
have any `check`ing logic they want, and so can eg. determine if a path
is a particular type of file, but should return quickly and do little work
since they are called frequently.
Validation fails if an argument doesn't match any interface.
```{note}
The {class}`.NumpyInterface` is special cased and is only checked if
no other interface matches. It attempts to cast the input argument to a
{class}`numpy.ndarray` to see if it is arraylike, and since many
lazy-loaded array libraries will attempt to load the whole array into memory
when cast to an `ndarray`, we only try as a last resort.
```
## Validation
Validation is a chain of lifecycle methods, each of which can be overridden
for interfaces to implement custom behavior that matches the array format.
2024-05-23 07:27:00 +00:00
{meth}`.Interface.validate` calls the following methods, in order:
An initial hook for modifying the input data before validation, eg.
if it needs to be coerced or wrapped in some proxy class. This method
should accept all and only the types specified in that interface's
{attr}`~.Interface.input_types`.
2024-05-23 07:27:00 +00:00
- {meth}`.Interface.before_validation`
A cluster of methods for validating dtype.
Separating these methods allow for array formats that store dtype information
in a nonstandard attribute, require additional coercion, or for implementing
custom exception handlers or rescuers.
Check the method signatures and return types
when overriding and the docstrings for details.
- {meth}`.Interface.get_dtype`
2024-05-23 07:27:00 +00:00
- {meth}`.Interface.validate_dtype`
- {meth}`.Interface.raise_for_dtype`
A halftime hook for modifying the array or bailing early between validation phases.
- {meth}`.Interface.after_validate_dtype`
A cluster of methods for validating shape, similar to the dtype cluster.
- {meth}`.Interface.get_shape`
2024-05-23 07:27:00 +00:00
- {meth}`.Interface.validate_shape`
- {meth}`.Interface.raise_for_shape`
2024-05-23 07:27:00 +00:00
A final hook for modifying the array before passing it to be assigned to the field.
This method should return an object matching the interface's {attr}`~.Interface.return_type`.
- {meth}`.Interface.after_validation`
2024-05-23 07:27:00 +00:00
## Diagram
```{todo}
Sorry this is unreadable, need to recall how to change the theme for
generated mermaid diagrams but it is very late and i want to push this.
```
```{mermaid}
flowchart LR
classDef data fill:#2b8cee,color:#ffffff;
classDef X fill:transparent,border:none,color:#ff0000;
input
subgraph Interface
match
end
subgraph Numpy
numpy_check["check"]
end
subgraph Dask
direction TB
dask_check["check"]
subgraph Validation
direction TB
before_validation --> validate_dtype
validate_dtype --> validate_shape
validate_shape --> after_validation
end
dask_check --> Validation
end
subgraph Zarr
zarr_check["check"]
end
subgraph Model
output
end
zarr_x["X"]
numpy_x["X"]
input --> match
match --> numpy_check
match --> zarr_check
match --> Dask
zarr_check --> zarr_x
numpy_check --> numpy_x
Validation --> Model
class input data
class output data
class zarr_x X
class numpy_x X
```