Commit graph

43 commits

Author SHA1 Message Date
84cecfb09f
ut oh left a pdb in 2024-10-11 00:10:45 -07:00
d9f785efdd
windows can't do <U as a path even hypothetically 2024-10-11 00:09:27 -07:00
1187b37b2d
hoo boy. working combinatoric testing.
Split out annotation dtype and shape, swap out all interface tests, fix numpy and dask model casting, make merging models more efficient, correctly parameterize and mark tests!
2024-10-10 23:56:45 -07:00
5d4f03a8a9
finish replacing interface tests with new helper system 2024-10-10 18:58:05 -07:00
3356738e42
refactoring array generation, swapping in the interface case generators 2024-10-04 00:46:49 -07:00
7dbb22f828
format and also add pdm scripts 2024-10-03 20:01:56 -07:00
8f1eb6e5b4
linting for tests 2024-10-03 19:57:54 -07:00
f291afbbe2
create testing module, add to docs 2024-10-03 19:33:40 -07:00
85cef50603
refactor validation into separate module, perf improvements from not iterating over every element of array, rename array to value universally in serialized json lol 2024-09-23 23:25:20 -07:00
f9a992843e
tests for paths 2024-09-23 17:30:06 -07:00
708e6e81d8
roundtripping marked arrays, roundtrip or not 2024-09-23 15:54:55 -07:00
8cc2574399
add marks to all tests 2024-09-23 13:28:38 -07:00
70bf254ddd
lint, fix zarr dump test 2024-09-21 18:26:25 -07:00
b436d8d592
Roundtrip json serialization using dataclasses for all interfaces. Separate JSON schema generation from core_schema generation. More consistent json dumping behavior - always return just the array unless round_trip=True. 2024-09-20 23:44:59 -07:00
2cb09076fd
add ability to dump proxy classes to arrays, tests for doing so and json dumping 2024-09-20 18:28:38 -07:00
47e5cb8da1
bugfix - don't choke on empty datasets during validation 2024-09-03 17:41:34 -07:00
56c5b9ac79
support datetimes in hdf5 proxies 2024-09-03 16:54:31 -07:00
88fd42cdc3
fix test interfaces not being disabled 2024-09-03 13:10:26 -07:00
4152af1f91
allow revalidation of already-proxied arrays 2024-09-03 12:58:05 -07:00
d595e87e10
failing test for revalidation 2024-09-03 12:50:26 -07:00
e78c170a2b
correct decoding of byte arrays 2024-09-02 22:49:13 -07:00
f28c766b96
strings in compound dtypes 2024-09-02 22:40:17 -07:00
0e6ea07d5e
Add support for strings in hdf5 2024-09-02 22:14:47 -07:00
b1c8d3e422
Add len method to video and hdf5 interfaces, make dunder test module to test dunder methods across all interfaces 2024-09-02 18:13:28 -07:00
2a93694cfc
fix setting values 2024-09-02 17:05:32 -07:00
03fe97b7e0
add ability to index hdf5 compound datasets 2024-09-02 16:45:56 -07:00
dd9a8e959f
allow arbitrary dtypes, and allow pydantic models as the inner type in json schema array creation 2024-08-12 20:50:33 -07:00
025832aa3d
testing for fast matching mode. recursively get interface classes including disabled classes 2024-05-24 18:31:04 -07:00
6ebed2b804
lint 2024-05-20 21:21:45 -07:00
a948a41663
coverage for video tests 2024-05-20 21:20:56 -07:00
a4d82f0879
docs! add recursive any shaped arrays! 2024-05-20 21:16:16 -07:00
e2231cc9f0
video interface! 2024-05-20 19:17:46 -07:00
fd252e3911
fix string checking in raised asserts 2024-05-17 18:14:00 -07:00
3a6984f3f0
correct error raising tests after more generous numpy coercion method 2024-05-17 17:55:05 -07:00
5e90c1bee1
add serialization info to to_json methods, zarr dump array context option, remove coerce_list and just let numpy interface handle it 2024-05-17 17:39:30 -07:00
f3fd0a0ed2
coverage tests for hdf5 interface. filter numpy deprecation warnings from nptyping 2024-05-17 16:51:41 -07:00
2b56da6808
correct attr naming 2024-05-14 20:19:24 -07:00
9b13226164
tests and no covers continue 2024-05-14 20:18:04 -07:00
a079fbcafc
working zarr impl 2024-05-08 22:06:41 -07:00
b82a49df1b
Better test cases, dtype module, compound types 2024-05-08 21:29:13 -07:00
d884055067
not quite working zarr implementation 2024-04-29 19:49:38 -07:00
5b722bb6da
remove nwb_linkml remnants, add to_json method for json serialization 2024-04-22 19:31:56 -07:00
46060c1154
dask and hdf5 array interfaces 2024-04-08 18:36:47 -07:00