nwb-linkml/nwb_linkml/tests/test_adapters/test_adapter_namespaces.py

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import pytest
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from nwb_linkml.adapters import SchemaAdapter
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@pytest.mark.parametrize(
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["class_name", "schema_file", "namespace_name"],
[
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("DynamicTable", "table.yaml", "hdmf-common"),
("Container", "base.yaml", "hdmf-common"),
("TimeSeries", "nwb.base.yaml", "core"),
("ImageSeries", "nwb.image.yaml", "core"),
],
)
def test_find_type_source(nwb_core_fixture, class_name, schema_file, namespace_name):
defining_sch = nwb_core_fixture.find_type_source(class_name)
assert defining_sch.path.name == schema_file
assert namespace_name == defining_sch.namespace
def test_populate_imports(nwb_core_fixture):
nwb_core_fixture.populate_imports()
schema: SchemaAdapter
assert len(nwb_core_fixture.schemas) > 0
for schema in nwb_core_fixture.schemas:
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need_imports = [
nwb_core_fixture.find_type_source(cls.neurodata_type_def).namespace
for cls in schema.created_classes
if cls.neurodata_type_inc is not None
]
need_imports = [i for i in need_imports if i != schema.namespace]
for i in need_imports:
assert i in schema.imports
def test_build(nwb_core_fixture):
pass
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def test_skip_imports(nwb_core_fixture):
"""
We can build just the namespace in question without also building the other namespaces that it imports
"""
res = nwb_core_fixture.build(skip_imports=True)
# we shouldn't have any of the hdmf-common schema in with us
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namespaces = [sch.annotations["namespace"].value for sch in res.schemas]
assert all([ns == "core" for ns in namespaces])
@pytest.mark.skip()
def test_populate_inheritance(nwb_core_fixture):
"""
Classes should receive and override the properties of their parents
when they have neurodata_type_inc
Args:
nwb_core_fixture:
Returns:
"""
pass