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62 lines
1.8 KiB
Python
62 lines
1.8 KiB
Python
import pytest
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from nwb_linkml.adapters import SchemaAdapter
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@pytest.mark.parametrize(
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["class_name", "schema_file", "namespace_name"],
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[
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("DynamicTable", "table.yaml", "hdmf-common"),
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("Container", "base.yaml", "hdmf-common"),
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("TimeSeries", "nwb.base.yaml", "core"),
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("ImageSeries", "nwb.image.yaml", "core"),
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],
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)
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def test_find_type_source(nwb_core_fixture, class_name, schema_file, namespace_name):
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defining_sch = nwb_core_fixture.find_type_source(class_name)
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assert defining_sch.path.name == schema_file
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assert namespace_name == defining_sch.namespace
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def test_populate_imports(nwb_core_fixture):
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nwb_core_fixture.populate_imports()
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schema: SchemaAdapter
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assert len(nwb_core_fixture.schemas) > 0
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for schema in nwb_core_fixture.schemas:
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need_imports = [
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nwb_core_fixture.find_type_source(cls.neurodata_type_def).namespace
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for cls in schema.created_classes
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if cls.neurodata_type_inc is not None
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]
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need_imports = [i for i in need_imports if i != schema.namespace]
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for i in need_imports:
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assert i in schema.imports
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def test_build(nwb_core_fixture):
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pass
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def test_skip_imports(nwb_core_fixture):
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"""
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We can build just the namespace in question without also building the other namespaces that it imports
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"""
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res = nwb_core_fixture.build(skip_imports=True)
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# we shouldn't have any of the hdmf-common schema in with us
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namespaces = [sch.annotations["namespace"].value for sch in res.schemas]
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assert all([ns == "core" for ns in namespaces])
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@pytest.mark.skip()
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def test_populate_inheritance(nwb_core_fixture):
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"""
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Classes should receive and override the properties of their parents
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when they have neurodata_type_inc
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Args:
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nwb_core_fixture:
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Returns:
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"""
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pass
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