nwb-linkml/nwb_linkml/tests/data/test_nwb_condensed_sketch.yaml

# Sketch of a condensed expression syntax for creation with nwb-linkml
# just a sketch! keeping here for continued work but currentl unused.
---
id: my_dataset

prefixes:
  nwbfile:
    - path: "test_nwb.nwb"
    - hash: "blake2b:blahblahblahblah"

imports:
  core:
    as: nwb
    version: "2.7.0"
    from:
      - pypi:
          package: nwb-models
  hdmf-common:
    as: hdmf
    version: "1.8.0"
    from:
      - pypi:
          package: nwb-models
---

extracellular_ephys: &ecephys
  electrodes:
    group:
      - @shank{{i}}
      - @shank{{i}}
      - @shank{{i}}
      # could have expression here like { range(3) } => i
      # - ... { range(3) } => i
      # or blank ... implies use expression from outer scope
      - ...
    shank{{i}}:
      device: @general.devices.array
    ...: { range(3) } => i

# expands to
extracellular_ephys:
  electrodes:
    group:
      - @shank0
      - @shank0
      - @shank0
      - @shank1
      - # etc.
    shank0:
      device: @general.devices.array
    shank1:
      device: @general.devices.array
    # etc.

data: !{{ nwb.NWBFile }} <== :nwbfile
  file_create_date: [ 2024-01-01 ]
  identifier: "1111-1111-1111-1111"
  session_description: All that you touch, you change.
  session_start_time: 2024-01-01T01:01:01
  general:
    devices:
      - Heka ITC-1600:
      - Microscope:
      - array:
          description: old reliable
          manufacturer: diy
    extracellular_ephys: *ecephys

    experiment_description: All that you change, changes you.
    experimenter: [ "Lauren Oya Olamina" ]
    institution: Earthseed Research Institute
    keywords:
      - behavior
      - belief
    related_publications: doi:10.1016/j.neuron.2016.12.011