mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-11-14 10:44:28 +00:00
76 lines
1.7 KiB
YAML
76 lines
1.7 KiB
YAML
# Sketch of a condensed expression syntax for creation with nwb-linkml
|
|
# just a sketch! keeping here for continued work but currentl unused.
|
|
---
|
|
id: my_dataset
|
|
|
|
prefixes:
|
|
nwbfile:
|
|
- path: "test_nwb.nwb"
|
|
- hash: "blake2b:blahblahblahblah"
|
|
|
|
imports:
|
|
core:
|
|
as: nwb
|
|
version: "2.7.0"
|
|
from:
|
|
- pypi:
|
|
package: nwb-models
|
|
hdmf-common:
|
|
as: hdmf
|
|
version: "1.8.0"
|
|
from:
|
|
- pypi:
|
|
package: nwb-models
|
|
---
|
|
|
|
extracellular_ephys: &ecephys
|
|
electrodes:
|
|
group:
|
|
- @shank{{i}}
|
|
- @shank{{i}}
|
|
- @shank{{i}}
|
|
# could have expression here like { range(3) } => i
|
|
# - ... { range(3) } => i
|
|
# or blank ... implies use expression from outer scope
|
|
- ...
|
|
shank{{i}}:
|
|
device: @general.devices.array
|
|
...: { range(3) } => i
|
|
|
|
# expands to
|
|
extracellular_ephys:
|
|
electrodes:
|
|
group:
|
|
- @shank0
|
|
- @shank0
|
|
- @shank0
|
|
- @shank1
|
|
- # etc.
|
|
shank0:
|
|
device: @general.devices.array
|
|
shank1:
|
|
device: @general.devices.array
|
|
# etc.
|
|
|
|
data: !{{ nwb.NWBFile }} <== :nwbfile
|
|
file_create_date: [ 2024-01-01 ]
|
|
identifier: "1111-1111-1111-1111"
|
|
session_description: All that you touch, you change.
|
|
session_start_time: 2024-01-01T01:01:01
|
|
general:
|
|
devices:
|
|
- Heka ITC-1600:
|
|
- Microscope:
|
|
- array:
|
|
description: old reliable
|
|
manufacturer: diy
|
|
extracellular_ephys: *ecephys
|
|
|
|
experiment_description: All that you change, changes you.
|
|
experimenter: [ "Lauren Oya Olamina" ]
|
|
institution: Earthseed Research Institute
|
|
keywords:
|
|
- behavior
|
|
- belief
|
|
related_publications: doi:10.1016/j.neuron.2016.12.011
|
|
|