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add formatting config

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sneakers-the-rat 2024-07-01 21:22:35 -07:00
parent 7a362e5988
commit 3e5e73d186
Signed by untrusted user who does not match committer: jonny
GPG key ID: 6DCB96EF1E4D232D
4 changed files with 558 additions and 115 deletions
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507
nwb_linkml/pdm.lock
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5
nwb_linkml/pyproject.toml
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@ -43,6 +43,11 @@ tests = [
"pytest-profiling<2.0.0,>=1.7.0",
"sybil<6.0.0,>=5.0.3",
]
dev = [
"nwb-linkml[tests]",
"ruff>=0.5.0",
"black>=24.4.2",
]
[tool.pdm]
distribution = true

87
pdm.lock
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@ -5,7 +5,7 @@
groups = ["default", "dev"]
strategy = ["cross_platform", "inherit_metadata"]
lock_version = "4.4.2"
content_hash = "sha256:f11ad9b7b3e0d83f13c208abbc38ae91609f617a3ceae75b7dd951553900ef24"
content_hash = "sha256:3113d2345a99f9287c2a8a545bcfeb5d34b99f44377f211dab8652e78d2f551d"
[[package]]
name = "alabaster"
@ -146,6 +146,38 @@ files = [
{file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"},
]
[[package]]
name = "black"
version = "24.4.2"
requires_python = ">=3.8"
summary = "The uncompromising code formatter."
groups = ["dev"]
dependencies = [
"click>=8.0.0",
"mypy-extensions>=0.4.3",
"packaging>=22.0",
"pathspec>=0.9.0",
"platformdirs>=2",
"tomli>=1.1.0; python_version < \"3.11\"",
"typing-extensions>=4.0.1; python_version < \"3.11\"",
]
files = [
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{file = "black-24.4.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:be8bef99eb46d5021bf053114442914baeb3649a89dc5f3a555c88737e5e98fc"},
{file = "black-24.4.2-cp312-cp312-win_amd64.whl", hash = "sha256:415e686e87dbbe6f4cd5ef0fbf764af7b89f9057b97c908742b6008cc554b9c0"},
{file = "black-24.4.2-py3-none-any.whl", hash = "sha256:d36ed1124bb81b32f8614555b34cc4259c3fbc7eec17870e8ff8ded335b58d8c"},
{file = "black-24.4.2.tar.gz", hash = "sha256:c872b53057f000085da66a19c55d68f6f8ddcac2642392ad3a355878406fbd4d"},
]
[[package]]
name = "blosc2"
version = "2.7.0"
@ -1240,6 +1272,17 @@ files = [
{file = "msgpack-1.0.8.tar.gz", hash = "sha256:95c02b0e27e706e48d0e5426d1710ca78e0f0628d6e89d5b5a5b91a5f12274f3"},
]
[[package]]
name = "mypy-extensions"
version = "1.0.0"
requires_python = ">=3.5"
summary = "Type system extensions for programs checked with the mypy type checker."
groups = ["dev"]
files = [
{file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
{file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
]
[[package]]
name = "myst-nb"
version = "1.1.1"
@ -1460,8 +1503,8 @@ dependencies = [
"myst-nb @ git+https://github.com/executablebooks/MyST-NB.git",
"myst-parser>=2.0.0",
"nptyping>=2.5.0",
"nwb-linkml",
"nwb-schema-language",
"nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml",
"nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language",
"sphinx-autobuild>=2021.3.14",
"sphinx-design>=0.5.0",
"sphinx-togglebutton>=0.3.2",
@ -1542,6 +1585,17 @@ files = [
{file = "partd-1.4.2.tar.gz", hash = "sha256:d022c33afbdc8405c226621b015e8067888173d85f7f5ecebb3cafed9a20f02c"},
]
[[package]]
name = "pathspec"
version = "0.12.1"
requires_python = ">=3.8"
summary = "Utility library for gitignore style pattern matching of file paths."
groups = ["dev"]
files = [
{file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"},
{file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
]
[[package]]
name = "pexpect"
version = "4.9.0"
@ -2301,6 +2355,33 @@ files = [
{file = "ruamel.yaml.clib-0.2.8.tar.gz", hash = "sha256:beb2e0404003de9a4cab9753a8805a8fe9320ee6673136ed7f04255fe60bb512"},
]
[[package]]
name = "ruff"
version = "0.5.0"
requires_python = ">=3.7"
summary = "An extremely fast Python linter and code formatter, written in Rust."
groups = ["dev"]
files = [
{file = "ruff-0.5.0-py3-none-linux_armv6l.whl", hash = "sha256:ee770ea8ab38918f34e7560a597cc0a8c9a193aaa01bfbd879ef43cb06bd9c4c"},
{file = "ruff-0.5.0-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:38f3b8327b3cb43474559d435f5fa65dacf723351c159ed0dc567f7ab735d1b6"},
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{file = "ruff-0.5.0.tar.gz", hash = "sha256:eb641b5873492cf9bd45bc9c5ae5320648218e04386a5f0c264ad6ccce8226a1"},
]
[[package]]
name = "setuptools"
version = "70.2.0"

74
pyproject.toml
View file

@ -8,6 +8,8 @@ dev = [
'-e nwb-linkml @ file:///${PROJECT_ROOT}/nwb_linkml',
'-e nwb-schema-language @ file:///${PROJECT_ROOT}/nwb_schema_language',
'-e docs @ file:///${PROJECT_ROOT}/docs',
"ruff>=0.5.0",
"black>=24.4.2",
]
[tool.codespell]
@ -15,4 +17,74 @@ dev = [
skip = '.git*,*.lock,*.css,./nwb_linkml/src/nwb_linkml/models,./nwb_linkml/src/nwb_linkml/schema'
check-hidden = true
# ignore-regex = ''
# ignore-words-list = ''
# ignore-words-list = ''
[tool.ruff]
target-version = "py311"
include = ["nwb_linkml/**/*.py", "nwb_schema_language/src/**/*.py", "pyproject.toml"]
exclude = [
"docs",
"nwb_schema_language/src/nwb_schema_language/datamodel/nwb_schema_language.py",
"nwb_schema_language/src/nwb_schema_language/datamodel/nwb_schema_pydantic.py",
"nwb_linkml/src/nwb_linkml/models/**/*.py"
]
line-length = 100
[tool.ruff.lint]
select = [
# pycodestyle
"E",
# Pyflakes
"F",
# pyupgrade
"UP",
# flake8-bugbear
"B",
# flake8-simplify
"SIM",
# isort
"I",
# annotations
"ANN",
## ----------
# pydocstyle
# undocumented public objects
"D100", "D101", "D102", "D103", "D104", "D106", "D107",
# indentation
"D207", "D208",
# whitespace
"D210", "D211",
# emptiness
"D419",
]
ignore = [
"ANN101", "ANN102", "ANN401", "ANN204",
# explicit strict arg for zip
"B905",
# builtin type annotations
"UP006", "UP035",
# | for Union types (only supported >=3.10
"UP007", "UP038",
# docstrings for __init__
"D107",
]
fixable = ["ALL"]
[tool.mypy]
plugins = [
"pydantic.mypy"
]
packages = [
"miniscope_io"
]
exclude = [
'.*vendor.*'
]
follow_imports = "silent"
warn_unreachable = true
[tool.black]
target-version = ['py38', 'py39', 'py310', 'py311']
include = "nwb_linkml/.*\\.py$|nwb_schema_language/.*\\.py$"
line-length = 100